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PDB: 257 results

1VZK
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A Thiophene Based Diamidine Forms a "Super" AT Binding Minor Groove Agent
Descriptor: 2-(5-{4-[AMINO(IMINO)METHYL]PHENYL}-2-THIENYL)-1H-BENZIMIDAZOLE-6- CARBOXIMIDAMIDE DIHYDROCHLORIDE, 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP *CP*G)-3', MAGNESIUM ION
Authors:Mallena, S, Lee, M.P.H, Bailly, C, Neidle, S, Kumar, A, Boykin, D.W, Wilson, W.D.
Deposit date:2004-05-20
Release date:2004-10-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Thiophene-Based Diamidine Forms a "Super" at Binding Minor Groove Agent
J.Am.Chem.Soc., 142, 2004
3EPM
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BU of 3epm by Molmil
Crystal structure of Caulobacter crescentus ThiC
Descriptor: 4-AMINO-5-HYDROXYMETHYL-2-METHYLPYRIMIDINE, SULFATE ION, Thiamine biosynthesis protein thiC, ...
Authors:Li, S, Chatterjee, A, Zhang, Y, Grove, T.L, Lee, M, Krebs, C, Booker, S.J, Begley, T.P, Ealick, S.E.
Deposit date:2008-09-29
Release date:2008-10-28
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.793 Å)
Cite:Reconstitution of ThiC in thiamine pyrimidine biosynthesis expands the radical SAM superfamily
Nat.Chem.Biol., 4, 2008
3EPN
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Crystal structure of Caulobacter crescentus ThiC complexed with imidazole ribonucleotide
Descriptor: 1-(5-O-phosphono-beta-D-ribofuranosyl)-1H-imidazole, Thiamine biosynthesis protein thiC
Authors:Li, S, Chatterjee, A, Zhang, Y, Grove, T.L, Lee, M, Krebs, C, Booker, S.J, Begley, T.P, Ealick, S.E.
Deposit date:2008-09-29
Release date:2008-10-28
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Reconstitution of ThiC in thiamine pyrimidine biosynthesis expands the radical SAM superfamily
Nat.Chem.Biol., 4, 2008
4JRR
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BU of 4jrr by Molmil
Crystal structure of disulfide bond oxidoreductase DsbA1 from Legionella pneumophila
Descriptor: GLYCEROL, SULFATE ION, Thiol:disulfide interchange protein DsbA
Authors:Shumilin, I.A, Jameson-Lee, M, Cymborowski, M, Domagalski, M.J, Chertihin, O, Kpadeh, Z.Z, Yeh, A.J, Hoffman, P.S, Anderson, W.F, Minor, W, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2013-03-21
Release date:2013-04-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Crystal structure of disulfide bond oxidoreductase DsbA1 from Legionella pneumophila
To be Published
1ZXF
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BU of 1zxf by Molmil
Solution structure of a self-sacrificing resistance protein, CalC from Micromonospora echinospora
Descriptor: CalC
Authors:Singh, S, Hager, M.H, Zhang, C, Griffith, B.R, Lee, M.S, Hallenga, K, Markley, J.L, Thorson, J.S, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2005-06-08
Release date:2005-12-13
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural insight into the self-sacrifice mechanism of enediyne resistance.
Acs Chem.Biol., 1, 2006
1XOY
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BU of 1xoy by Molmil
Solution structure of At3g04780.1, an Arabidopsis ortholog of the C-terminal domain of human thioredoxin-like protein
Descriptor: hypothetical protein At3g04780.1
Authors:Song, J, Robert, C.T, Lee, M.S, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2004-10-07
Release date:2004-10-12
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of At3g04780.1-des15, an Arabidopsis thaliana ortholog of the C-terminal domain of human thioredoxin-like protein.
Protein Sci., 14, 2005
5FDN
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Crystal structure of phosphoenolpyruvate carboxylase from Arabidopsis thaliana in complex with aspartate and citrate
Descriptor: ASPARTIC ACID, CITRATE ANION, Phosphoenolpyruvate carboxylase 3
Authors:Connell, M.B, Lee, M.J.Y, Plaxton, W.C, Jia, Z.
Deposit date:2015-12-16
Release date:2017-02-08
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of phosphoenolpyruvate carboxylase from Arabidopsis thaliana in complex with aspartate and citrate
To Be Published
3IT9
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BU of 3it9 by Molmil
Crystal structure of Penicillin-Binding Protein 6 (PBP6) from E. coli in apo state
Descriptor: D-alanyl-D-alanine carboxypeptidase dacC, SULFATE ION, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
Authors:Chen, Y, Zhang, W, Shi, Q, Hesek, D, Lee, M, Mobashery, S, Shoichet, B.K.
Deposit date:2009-08-27
Release date:2009-10-20
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of penicillin-binding protein 6 from Escherichia coli.
J.Am.Chem.Soc., 131, 2009
2B0K
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Crystal structure of the DB921-D(CGCGAATTCGCG)2 complex.
Descriptor: 2-(4'-AMIDINOBIPHENYL-4-YL)-1H-BENZIMIDAZOLE-5-AMIDINE, 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', MAGNESIUM ION
Authors:Miao, Y, Lee, M.P, Parkinson, G.N, Batista-Parra, A, Ismail, M.A, Neidle, S, Boykin, D.W, Wilson, W.D.
Deposit date:2005-09-14
Release date:2005-11-22
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Out-of-Shape DNA Minor Groove Binders: Induced Fit Interactions of Heterocyclic Dications with the DNA Minor Groove.
Biochemistry, 44, 2005
3ITB
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BU of 3itb by Molmil
Crystal structure of Penicillin-Binding Protein 6 (PBP6) from E. coli in complex with a substrate fragment
Descriptor: D-alanyl-D-alanine carboxypeptidase DacC, Peptidoglycan substrate (AMV)A(FGA)K(DAL)(DAL), SULFATE ION, ...
Authors:Chen, Y, Zhang, W, Shi, Q, Hesek, D, Lee, M, Mobashery, S, Shoichet, B.K.
Deposit date:2009-08-27
Release date:2009-10-20
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of penicillin-binding protein 6 from Escherichia coli.
J.Am.Chem.Soc., 131, 2009
1YDU
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BU of 1ydu by Molmil
Solution NMR structure of At5g01610, an Arabidopsis thaliana protein containing DUF538 domain
Descriptor: At5g01610
Authors:Zhao, Q, Cornilescu, C.C, Lee, M.S, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2004-12-26
Release date:2005-02-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution NMR structure of At5g01610, an Arabidopsis thaliana protein containing DUF538 domain
To be Published
3EPO
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BU of 3epo by Molmil
Crystal structure of Caulobacter crescentus ThiC complexed with HMP-P
Descriptor: (4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL DIHYDROGEN PHOSPHATE, Thiamine biosynthesis protein thiC
Authors:Li, S, Chatterjee, A, Zhang, Y, Grove, T.L, Lee, M, Krebs, C, Booker, S.J, Begley, T.P, Ealick, S.E.
Deposit date:2008-09-29
Release date:2008-10-28
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Reconstitution of ThiC in thiamine pyrimidine biosynthesis expands the radical SAM superfamily
Nat.Chem.Biol., 4, 2008
3ITA
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BU of 3ita by Molmil
Crystal structure of Penicillin-Binding Protein 6 (PBP6) from E. coli in acyl-enzyme complex with ampicillin
Descriptor: (2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid, (2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC ACID, D-alanyl-D-alanine carboxypeptidase dacC, ...
Authors:Chen, Y, Zhang, W, Shi, Q, Hesek, D, Lee, M, Mobashery, S, Shoichet, B.K.
Deposit date:2009-08-27
Release date:2009-10-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of penicillin-binding protein 6 from Escherichia coli.
J.Am.Chem.Soc., 131, 2009
1YYC
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BU of 1yyc by Molmil
Solution Structure of a putative late embryogenesis abundant (LEA) protein At2g46140.1
Descriptor: putative late embryogenesis abundant protein
Authors:Center for Eukaryotic Structural Genomics (CESG), Song, J, Tyler, R.C, Lee, M.S, Markley, J.L.
Deposit date:2005-02-24
Release date:2005-04-05
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution Structure of a putative late embryogenesis abundant (LEA) protein At2g46140.1
To be Published
4MHA
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BU of 4mha by Molmil
Crystal structure of the catalytic domain of the proto-oncogene tyrosine-protein kinase MER in complex with inhibitor UNC1817
Descriptor: 2-(butylamino)-4-[(trans-4-hydroxycyclohexyl)amino]-N-(4-sulfamoylbenzyl)pyrimidine-5-carboxamide, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Zhang, W, Mciver, A, Stashko, M.A, Deryckere, D, Branchford, B.R, Hunter, D, Kireev, D.B, Miley, D.B.M, Norris-Drouin, J, Stewart, W.M, Lee, M, Sather, S, Zhou, Y, Dipaola, J.A, Machius, M, Janzen, W.P, Earp, H.S, Graham, D.K, Frye, S, Wang, X.
Deposit date:2013-08-29
Release date:2014-05-21
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Discovery of Mer specific tyrosine kinase inhibitors for the treatment and prevention of thrombosis.
J.Med.Chem., 56, 2013
5YT9
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BU of 5yt9 by Molmil
Crystal structure of H5 hemagglutinin G228S mutant from A/chicken/Taiwan/0502/2012
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin
Authors:Lin, T.H, Lee, M.S, Wu, W.G, Liu, J.S.
Deposit date:2017-11-17
Release date:2018-11-21
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.766 Å)
Cite:crystal structure of H5 hemagglutinin from A/chicken/Taiwan/0502/2012
To Be Published
6IJT
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BU of 6ijt by Molmil
Crystal structure of H5N2 hemagglutinin G228S Q226L mutant with 6SLN from A/chicken/Taiwan/0502/2012
Descriptor: Hemagglutinin, N-acetyl-alpha-neuraminic acid
Authors:Lin, T.H, Lee, M.S, Liu, J.S.
Deposit date:2018-10-12
Release date:2019-10-16
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:crystal structure of H5 hemagglutinin from A/chicken/Taiwan/0502/2012
To Be Published
5YT8
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Crystal structure of H5 hemagglutinin with G228S Q226L mutants from A/chicken/Taiwan/0502/2012
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin
Authors:Lin, T.H, Lee, M.S, Wu, W.G, Liu, J.S.
Deposit date:2017-11-17
Release date:2018-11-21
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.765 Å)
Cite:crystal structure of H5 hemagglutinin from A/chicken/Taiwan/0502/2012
To Be Published
4MH7
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BU of 4mh7 by Molmil
Crystal structure of the catalytic domain of the proto-oncogene tyrosine-protein kinase MER in complex with inhibitor UNC1896
Descriptor: CHLORIDE ION, MAGNESIUM ION, N-butyl-2-(butylamino)-4-[(trans-4-hydroxycyclohexyl)amino]-N-methylpyrimidine-5-carboxamide, ...
Authors:Zhang, W, McIver, A, Stashko, M.A, Deryckere, D, Branchford, B.R, Hunter, D, Kireev, D.B, Miley, M.J, Norris-Drouin, J, Stewart, W.M, Lee, M, Sather, S, Zhou, Y, DiPaola, J.A, Machius, M, Janzen, W.P, Earp, H.S, Graham, D.K, Frye, S, Wang, X.
Deposit date:2013-08-29
Release date:2014-05-21
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Discovery of Mer specific tyrosine kinase inhibitors for the treatment and prevention of thrombosis.
J.Med.Chem., 56, 2013
6IIG
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BU of 6iig by Molmil
crystal structure of H5N2 hemagglutinin G228S mutant With 6SLN from A/chicken/Taiwan/0502/2012
Descriptor: Hemagglutinin, N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose
Authors:Lin, T.H, Lee, M.S, Wu, W.G.
Deposit date:2018-10-05
Release date:2019-10-09
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.208 Å)
Cite:crystal structure of H5 hemagglutinin from A/chicken/Taiwan/0502/2012
To Be Published
5Z88
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Crystal structure of H5 hemagglutinin G228S mutant with 3SLN from A/chicken/Taiwan/0502/2012
Descriptor: Hemagglutinin, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose
Authors:Lin, T.H, Lee, M.S, Wu, W.G, Liu, J.S.
Deposit date:2018-01-31
Release date:2019-02-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3 Å)
Cite:crystal structure of H5 hemagglutinin from A/chicken/Taiwan/0502/2012
To Be Published
3TVQ
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BU of 3tvq by Molmil
Crystal structure of TCM Aro/Cyc complexed with trans-dihidroquercetin
Descriptor: (2R,3R)-2-(3,4-DIHYDROXYPHENYL)-3,5,7-TRIHYDROXY-2,3-DIHYDRO-4H-CHROMEN-4-ONE, Multifunctional cyclase-dehydratase-3-O-methyl transferase tcmN
Authors:Ames, B.D, Lee, M.-Y, Tsai, S.-C.
Deposit date:2011-09-20
Release date:2012-04-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Insight into the Molecular Basis of Aromatic Polyketide Cyclization: Crystal Structure and in Vitro Characterization of WhiE-ORFVI.
Biochemistry, 51, 2012
1A50
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BU of 1a50 by Molmil
CRYSTAL STRUCTURE OF WILD-TYPE TRYPTOPHAN SYNTHASE COMPLEXED WITH 5-FLUOROINDOLE PROPANOL PHOSPHATE
Descriptor: 5-FLUOROINDOLE PROPANOL PHOSPHATE, PYRIDOXAL-5'-PHOSPHATE, SODIUM ION, ...
Authors:Schneider, T.R, Gerhardt, E, Lee, M, Liang, P.-H, Anderson, K.S, Schlichting, I.
Deposit date:1998-02-18
Release date:1999-03-30
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Loop closure and intersubunit communication in tryptophan synthase.
Biochemistry, 37, 1998
1A5S
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BU of 1a5s by Molmil
CRYSTAL STRUCTURE OF WILD-TYPE TRYPTOPHAN SYNTHASE COMPLEXED WITH 5-FLUOROINDOLE PROPANOL PHOSPHATE AND L-SER BOUND AS AMINO ACRYLATE TO THE BETA SITE
Descriptor: 5-FLUOROINDOLE PROPANOL PHOSPHATE, PYRIDOXAL-5'-PHOSPHATE, SERINE, ...
Authors:Schneider, T.R, Gerhardt, E, Lee, M, Liang, P.-H, Anderson, K.S, Schlichting, I.
Deposit date:1998-02-17
Release date:1999-03-30
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Loop closure and intersubunit communication in tryptophan synthase.
Biochemistry, 37, 1998
2B3E
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BU of 2b3e by Molmil
Crystal structure of DB819-D(CGCGAATTCGCG)2 complex.
Descriptor: 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', 6-(4,5-DIHYDRO-1H-IMIDAZOL-2-YL)-2-{5-[4-(4,5-DIHYDRO-1H-IMIDAZOL-2-YL)PHENYL]THIEN-2-YL}-1H-BENZIMIDAZOLE, MAGNESIUM ION
Authors:Campbell, N.H, Evans, D.A, Lee, M.P, Parkinson, G.N, Neidle, S.
Deposit date:2005-09-20
Release date:2005-11-22
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Targeting the DNA minor groove with fused ring dicationic compounds: Comparison of in silico screening and a high-resolution crystal structure.
Bioorg.Med.Chem.Lett., 16, 2006

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