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PDB: 385 results

8Q53
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Crystal structure of truncated human Microtubule-associated proteins 1A/1B light chain 3B (MAP1LC3B) in apo form
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Microtubule-associated proteins 1A/1B light chain 3B
Authors:Kumar, A, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2023-08-08
Release date:2024-08-21
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Crystal structure of truncated human Microtubule-associated proteins 1A/1B light chain 3B in apo form
To Be Published
7NPW
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BU of 7npw by Molmil
Cryo-EM structure of Human excitatory amino acid transporters-1 (EAAT1) in potassium buffer
Descriptor: Excitatory amino acid transporter 1
Authors:Kumar, A, Reyes, N.
Deposit date:2021-02-28
Release date:2021-10-13
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.99 Å)
Cite:The ion-coupling mechanism of human excitatory amino acid transporters.
Embo J., 41, 2022
1FMM
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BU of 1fmm by Molmil
SOLUTION STRUCTURE OF NFGF-1
Descriptor: ACIDIC FIBROBLAST GROWTH FACTOR
Authors:Arunkumar, A.I, Srisailam, S, Kumar, T.K.S, Chiu, I.M, Yu, C.
Deposit date:2000-08-18
Release date:2001-08-18
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure and stability of an acidic fibroblast growth factor from Notophthalmus viridescens.
J.Biol.Chem., 277, 2002
6Y9A
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BU of 6y9a by Molmil
Structure of full-length CD20 in complex with Obinutuzumab Fab
Descriptor: B-lymphocyte antigen CD20, Obinutuzumab Fab Light chain, Obinutuzumab Fab heavy chain
Authors:Kumar, A, Reyes, N.
Deposit date:2020-03-06
Release date:2020-08-26
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Binding mechanisms of therapeutic antibodies to human CD20.
Science, 369, 2020
6Y97
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Structure of full-length CD20 in complex with Obinutuzumab Fab
Descriptor: B-lymphocyte antigen CD20, Obinutuzumab Fab heavy chain, Obinutuzumab Fab light chain
Authors:Kumar, A, Reyes, N.
Deposit date:2020-03-06
Release date:2020-08-26
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (4.33 Å)
Cite:Binding mechanisms of therapeutic antibodies to human CD20.
Science, 369, 2020
6Y92
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Structure of full-length CD20 in complex with Ofatumumab Fab
Descriptor: B-lymphocyte antigen CD20, CHOLESTEROL HEMISUCCINATE, Ofatumumab Fab heavy chain, ...
Authors:Kumar, A, Reyes, N.
Deposit date:2020-03-06
Release date:2020-08-26
Last modified:2025-10-01
Method:ELECTRON MICROSCOPY (4.73 Å)
Cite:Binding mechanisms of therapeutic antibodies to human CD20.
Science, 369, 2020
4LQ6
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BU of 4lq6 by Molmil
Crystal structure of Rv3717 reveals a novel amidase from M. tuberculosis
Descriptor: CHLORIDE ION, N-acetymuramyl-L-alanine amidase-related protein, PLATINUM (II) ION, ...
Authors:Kumar, A, Kumar, S, Kumar, D, Mishra, A, Dewangan, R.P, Shrivastava, P, Ramachandran, S, Taneja, B.
Deposit date:2013-07-17
Release date:2013-12-04
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:The structure of Rv3717 reveals a novel amidase from Mycobacterium tuberculosis.
Acta Crystallogr.,Sect.D, 69, 2013
3KJZ
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BU of 3kjz by Molmil
Crystal structure of native peptidyl-tRNA hydrolase from Mycobacterium smegmatis
Descriptor: Peptidyl-tRNA hydrolase
Authors:Kumar, A, Singh, N, Yadav, R, Prem Kumar, R, Sharma, S, Arora, A, Singh, T.P.
Deposit date:2009-11-04
Release date:2010-08-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of peptidyl-tRNA hydrolase from mycobacterium smegmatis reveals novel features related to enzyme dynamics.
Int J Biochem Mol Biol, 3, 2012
6Y90
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Structure of full-length CD20 in complex with Rituximab Fab
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, B-lymphocyte antigen CD20, CHOLESTEROL HEMISUCCINATE, ...
Authors:Kumar, A, Reyes, N.
Deposit date:2020-03-06
Release date:2020-08-26
Last modified:2025-10-01
Method:ELECTRON MICROSCOPY (3.69 Å)
Cite:Binding mechanisms of therapeutic antibodies to human CD20.
Science, 369, 2020
3IKJ
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Structural characterization for the nucleotide binding ability of subunit A mutant S238A of the A1AO ATP synthase
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, V-type ATP synthase alpha chain
Authors:Kumar, A, Manimekali, M.S.S, Balakrishna, A.M, Jeyakanthan, J, Gruber, G.
Deposit date:2009-08-06
Release date:2010-01-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Nucleotide binding states of subunit A of the A-ATP synthase and the implication of P-loop switch in evolution.
J.Mol.Biol., 396, 2010
5Y06
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Structural characterization of msmeg_4306 from Mycobacterium smegmatis
Descriptor: GLYCEROL, ZINC ION, msmeg_4306
Authors:Kumar, A, Karthikeyan, S.
Deposit date:2017-07-14
Release date:2018-05-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.606 Å)
Cite:Crystal structure of the MSMEG_4306 gene product from Mycobacterium smegmatis
Acta Crystallogr F Struct Biol Commun, 74, 2018
5Y05
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Structural characterization of msmeg_4306 from Mycobacterium smegmatis
Descriptor: ZINC ION, msmeg_4306
Authors:Kumar, A, Karthikeyan, S.
Deposit date:2017-07-14
Release date:2018-05-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.799 Å)
Cite:Crystal structure of the MSMEG_4306 gene product from Mycobacterium smegmatis
Acta Crystallogr F Struct Biol Commun, 74, 2018
8BR4
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BU of 8br4 by Molmil
Structure of GAPDH from Mycobacterium tuberculosis
Descriptor: 1,2-ETHANEDIOL, Glyceraldehyde-3-phosphate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Kumar, A, Karthikeyan, S.
Deposit date:2022-11-22
Release date:2023-11-01
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.29 Å)
Cite:Stoichiometry of ligand binding and role of C-terminal lysines in Mycobacterium tuberculosis and human GAPDH multifunctionality.
Febs J., 2024
7AG9
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BU of 7ag9 by Molmil
Structure of the Kar9 protein
Descriptor: Kar9
Authors:Kumar, A, prota, A.E, Steinmetz, M.O.
Deposit date:2020-09-22
Release date:2021-07-07
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure of the Kar9 protein
Structure, 2021
6JQV
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BU of 6jqv by Molmil
Crystal structure of Arabidopsis thaliana NRP2
Descriptor: NAP1-related protein 2
Authors:Kumar, A, Vasudevan, D.
Deposit date:2019-04-01
Release date:2019-07-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.42 Å)
Cite:Structural Characterization ofArabidopsis thalianaNAP1-Related Protein 2 (AtNRP2) and Comparison with its Homolog AtNRP1.
Molecules, 24, 2019
5OAT
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BU of 5oat by Molmil
PINK1 structure
Descriptor: MAGNESIUM ION, Serine/threonine-protein kinase PINK1, mitochondrial-like Protein
Authors:Kumar, A, Tamjar, J, Woodroof, H.I, Raimi, O.G, Waddell, A.Y, Peggie, M, Muqit, M.M.K, van Aalten, D.M.F.
Deposit date:2017-06-23
Release date:2017-10-11
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:Structure of PINK1 and mechanisms of Parkinson's disease associated mutations.
Elife, 6, 2017
5N38
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S65DParkin and pUB complex
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, E3 ubiquitin-protein ligase parkin,E3 ubiquitin-protein ligase parkin, ...
Authors:Kumar, A, Chaugule, V.K, Johnson, C, Toth, R, Sundaramoorthy, R, Knebel, A, Walden, H.
Deposit date:2017-02-08
Release date:2017-04-19
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Parkin-phosphoubiquitin complex reveals cryptic ubiquitin-binding site required for RBR ligase activity.
Nat. Struct. Mol. Biol., 24, 2017
7Q4W
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BU of 7q4w by Molmil
CryoEM structure of electron bifurcating Fe-Fe hydrogenase HydABC complex A. woodii in the oxidised state
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, IRON/SULFUR CLUSTER, ...
Authors:Kumar, A, Saura, P, Poeverlein, M.C, Gamiz-Hernandez, A.P, Kaila, V.R.I, Mueller, V, Schuller, J.M.
Deposit date:2021-11-02
Release date:2023-02-15
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.78 Å)
Cite:Molecular Basis of the Electron Bifurcation Mechanism in the [FeFe]-Hydrogenase Complex HydABC.
J.Am.Chem.Soc., 145, 2023
8C4A
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BU of 8c4a by Molmil
Structural and interactional insights into the glideosome-associated connector from Toxoplasma gondii
Descriptor: Putative anonymous antigen-1
Authors:Kumar, A, Morgan, R.M.L, Matthews, S.J.
Deposit date:2023-01-03
Release date:2023-07-19
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.675 Å)
Cite:Structural and regulatory insights into the glideosome-associated connector from Toxoplasma gondii.
Elife, 12, 2023
5N74
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BU of 5n74 by Molmil
Microtubule end binding protein complex
Descriptor: Karyogamy protein KAR9, Microtubule-associated protein RP/EB family member 1
Authors:Kumar, A, Steinmetz, M.
Deposit date:2017-02-18
Release date:2017-06-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Short Linear Sequence Motif LxxPTPh Targets Diverse Proteins to Growing Microtubule Ends.
Structure, 25, 2017
8BW0
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BU of 8bw0 by Molmil
Structure of CEACAM5 A3-B3 domain in Complex with Tusamitamab Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Carcinoembryonic antigen-related cell adhesion molecule 5, ...
Authors:Kumar, A, Bertrand, T, Rapisarda, C, Rak, A.
Deposit date:2022-12-06
Release date:2024-01-24
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.11 Å)
Cite:Structural insights into epitope-paratope interactions of a monoclonal antibody targeting CEACAM5-expressing tumors.
Nat Commun, 15, 2024
5N2W
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WT-Parkin and pUB complex
Descriptor: CHLORIDE ION, E3 ubiquitin-protein ligase parkin,E3 ubiquitin-protein ligase parkin, Polyubiquitin-B, ...
Authors:Kumar, A, Chaugule, V.K, Johnson, C, Toth, R, Sundaramoorthy, R, Knebel, A, Walden, H.
Deposit date:2017-02-08
Release date:2017-04-19
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.68 Å)
Cite:Parkin-phosphoubiquitin complex reveals cryptic ubiquitin-binding site required for RBR ligase activity.
Nat. Struct. Mol. Biol., 24, 2017
7VMF
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BU of 7vmf by Molmil
Crystal structure of Arabidopsis thaliana HDT2
Descriptor: Histone deacetylase HDT2, SODIUM ION
Authors:Kumar, A, Bobde, R.C, Vasudevan, D.
Deposit date:2021-10-08
Release date:2022-09-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Plant-specific HDT family histone deacetylases are nucleoplasmins.
Plant Cell, 34, 2022
5FCH
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BU of 5fch by Molmil
Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris, phosphate and Zn bound
Descriptor: DI(HYDROXYETHYL)ETHER, GLY-GLY-GLY, GLYCEROL, ...
Authors:Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R.D.
Deposit date:2015-12-15
Release date:2016-12-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure and biochemical investigations reveal novel mode of substrate selectivity and illuminate substrate inhibition and allostericity in a subfamily of Xaa-Pro dipeptidases
Biochim. Biophys. Acta, 1865, 2017
5FCF
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Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris, phosphate and Mn bound
Descriptor: DI(HYDROXYETHYL)ETHER, GLY-GLY-GLY, GLYCEROL, ...
Authors:Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R.D.
Deposit date:2015-12-15
Release date:2016-12-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure and biochemical investigations reveal novel mode of substrate selectivity and illuminate substrate inhibition and allostericity in a subfamily of Xaa-Pro dipeptidases.
Biochim. Biophys. Acta, 1865, 2017

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