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PDB: 32 results

6IG1
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BU of 6ig1 by Molmil
DNA polymerase IV - DNA ternary complex 10
Descriptor: DIPHOSPHATE, DNA polymerase IV, DTN3, ...
Authors:Kottur, J, Nair, D.T.
Deposit date:2018-09-21
Release date:2018-11-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction.
Nucleic Acids Res., 46, 2018
4R8U
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BU of 4r8u by Molmil
S-SAD structure of DINB-DNA Complex
Descriptor: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA, DNA polymerase IV, ...
Authors:Kottur, J, Nair, D.T, Weinert, T, Oligeric, V, Wang, M.
Deposit date:2014-09-03
Release date:2015-01-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Fast native-SAD phasing for routine macromolecular structure determination
Nat.Methods, 12, 2015
7JTP
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BU of 7jtp by Molmil
Crystal structure of Protac MS67 in complex with the WD repeat-containing protein 5 and pVHL:ElonginC:ElonginB
Descriptor: Elongin-B, Elongin-C, GLYCEROL, ...
Authors:Kottur, J, Jain, R, Aggarwal, A.K.
Deposit date:2020-08-18
Release date:2021-10-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:A selective WDR5 degrader inhibits acute myeloid leukemia in patient-derived mouse models.
Sci Transl Med, 13, 2021
7JTO
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BU of 7jto by Molmil
Crystal structure of Protac MS33 in complex with the WD repeat-containing protein 5 and pVHL:ElonginC:ElonginB
Descriptor: 1,2-ETHANEDIOL, 3-methyl-N-(11-{[2-(4-{[4'-(4-methylpiperazin-1-yl)-3'-{[6-oxo-4-(trifluoromethyl)-5,6-dihydropyridine-3-carbonyl]amino}[1,1'-biphenyl]-3-yl]methyl}piperazin-1-yl)ethyl]amino}-11-oxoundecanoyl)-L-valyl-(4R)-4-hydroxy-N-{[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl}-L-prolinamide, Elongin-B, ...
Authors:Kottur, J, Jain, R, Aggarwal, A.K.
Deposit date:2020-08-18
Release date:2021-10-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A selective WDR5 degrader inhibits acute myeloid leukemia in patient-derived mouse models.
Sci Transl Med, 13, 2021
8VCC
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BU of 8vcc by Molmil
Crystal structure of H19 influenza A virus hemagglutinin from A/lesser scaup/California/3087/2010
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, hemagglutinin
Authors:Kottur, J, Aggarwal, A.K.
Deposit date:2023-12-14
Release date:2024-07-03
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (2.383 Å)
Cite:H19 influenza A virus exhibits species-specific MHC class II receptor usage.
Cell Host Microbe, 32, 2024
8U7B
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BU of 8u7b by Molmil
Crystal structure of Apo form of Short Prokaryotic Argonaute TIR-APAZ (SPARTA) heterodimer
Descriptor: MANGANESE (II) ION, PROLINE, Piwi domain-containing protein, ...
Authors:Kottur, J, Aggarwal, A.K.
Deposit date:2023-09-15
Release date:2024-06-12
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Nucleic acid mediated activation of a short prokaryotic Argonaute immune system.
Nat Commun, 15, 2024
7TW9
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BU of 7tw9 by Molmil
Structure of nsp14 N7-MethylTransferase domain fused with TELSAM bound to Sinefungin
Descriptor: DI(HYDROXYETHYL)ETHER, ETHANOL, METHANOL, ...
Authors:Kottur, J, Aggarwal, A.K.
Deposit date:2022-02-06
Release date:2022-09-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:High-resolution structures of the SARS-CoV-2 N7-methyltransferase inform therapeutic development.
Nat.Struct.Mol.Biol., 29, 2022
7TW7
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BU of 7tw7 by Molmil
Structure of nsp14 N7-MethylTransferase domain fused with TELSAM bound to SAM
Descriptor: S-ADENOSYLMETHIONINE, Transcription factor ETV6,Proofreading exoribonuclease nsp14 chimera, ZINC ION
Authors:Kottur, J, Aggarwal, A.K.
Deposit date:2022-02-06
Release date:2022-09-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:High-resolution structures of the SARS-CoV-2 N7-methyltransferase inform therapeutic development.
Nat.Struct.Mol.Biol., 29, 2022
7TW8
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BU of 7tw8 by Molmil
Structure of nsp14 N7-MethylTransferase domain fused with TELSAM bound to SAH
Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, Transcription factor ETV6,Proofreading exoribonuclease nsp14 chimera, ZINC ION
Authors:Kottur, J, Aggarwal, A.K.
Deposit date:2022-02-06
Release date:2022-09-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:High-resolution structures of the SARS-CoV-2 N7-methyltransferase inform therapeutic development.
Nat.Struct.Mol.Biol., 29, 2022
8FRK
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BU of 8frk by Molmil
Structure of nsp14 N7-MethylTransferase domain fused with TELSAM bound to SGC8158
Descriptor: 5'-S-(4-{[(4'-chloro[1,1'-biphenyl]-3-yl)methyl]amino}butyl)-5'-thioadenosine, ETHANOL, POTASSIUM ION, ...
Authors:Kottur, J, Aggarwal, A.K.
Deposit date:2023-01-07
Release date:2023-07-26
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Structures of SARS-CoV-2 N7-methyltransferase with DOT1L and PRMT7 inhibitors provide a platform for new antivirals.
Plos Pathog., 19, 2023
8FRJ
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BU of 8frj by Molmil
Structure of nsp14 N7-MethylTransferase domain fused with TELSAM bound to SGC0946
Descriptor: 5-bromo-7-{5-[(3-{[(4-tert-butylphenyl)carbamoyl]amino}propyl)(propan-2-yl)amino]-5-deoxy-beta-D-ribofuranosyl}-7H-pyrrolo[2,3-d]pyrimidin-4-amine, Transcription factor ETV6,Guanine-N7 methyltransferase nsp14 chimera, ZINC ION
Authors:Kottur, J, Aggarwal, A.K.
Deposit date:2023-01-07
Release date:2023-07-26
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Structures of SARS-CoV-2 N7-methyltransferase with DOT1L and PRMT7 inhibitors provide a platform for new antivirals.
Plos Pathog., 19, 2023
4Q43
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BU of 4q43 by Molmil
Polymerase-damaged DNA complex
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*T*CP*TP*AP*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), DNA (5'-D(*TP*CP*TP*(RDG)P*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), ...
Authors:Kottur, J, Sharma, A, Nair, D.T.
Deposit date:2014-04-13
Release date:2015-05-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Unique structural features in DNA polymerase IV enable efficient bypass of the N2 adduct induced by the nitrofurazone antibiotic
Structure, 23, 2015
4Q45
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BU of 4q45 by Molmil
DNA Polymerase- damaged DNA complex
Descriptor: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*TP*CP*TP*A*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), DNA (5'-D(*TP*CP*TP*AP*GP*GP*(RDG)P*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), ...
Authors:Kottur, J, Sharma, A, Nair, D.T.
Deposit date:2014-04-13
Release date:2015-05-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.176 Å)
Cite:Unique structural features in DNA polymerase IV enable efficient bypass of the N2 adduct induced by the nitrofurazone antibiotic
Structure, 23, 2015
5YUR
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BU of 5yur by Molmil
DNA polymerase IV - DNA ternary complex 1
Descriptor: DNA polymerase IV, DTN, SODIUM ION, ...
Authors:Kottur, J, Nair, D.T.
Deposit date:2017-11-23
Release date:2018-08-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.035 Å)
Cite:Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res., 46, 2018
5YUY
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BU of 5yuy by Molmil
DNA polymerase IV - DNA ternary complex 9
Descriptor: DIPHOSPHATE, DNA polymerase IV, DTN, ...
Authors:Kottur, J, Nair, D.T.
Deposit date:2017-11-23
Release date:2018-10-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res., 46, 2018
5YUT
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BU of 5yut by Molmil
DNA polymerase IV - DNA ternary complex 3
Descriptor: DNA polymerase IV, DTN, MAGNESIUM ION, ...
Authors:Kottur, J, Nair, D.T.
Deposit date:2017-11-23
Release date:2018-09-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res., 46, 2018
5YUZ
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BU of 5yuz by Molmil
DNA polymerase IV - DNA ternary complex 11
Descriptor: DIPHOSPHATE, DNA polymerase IV, DTN1, ...
Authors:Kottur, J, Nair, D.T.
Deposit date:2017-11-23
Release date:2018-11-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction.
Nucleic Acids Res., 46, 2018
5YYE
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BU of 5yye by Molmil
DNA polymerase IV - ternary complex 16
Descriptor: 5'-O-[hydroxy{[hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]thymidine, DNA polymerase IV, DTN2, ...
Authors:Kottur, J, Nair, D.T.
Deposit date:2017-12-08
Release date:2018-09-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.325 Å)
Cite:Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res., 46, 2018
5YUS
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BU of 5yus by Molmil
DNA polymerase IV - DNA ternary complex 2
Descriptor: DNA polymerase IV, DTN, MAGNESIUM ION, ...
Authors:Kottur, J, Nair, D.T.
Deposit date:2017-11-23
Release date:2018-11-07
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res., 46, 2018
5YUV
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BU of 5yuv by Molmil
DNA polymerase IV - DNA ternary complex 5
Descriptor: DNA polymerase IV, DTN1, DTN2, ...
Authors:Kottur, J, Nair, D.T.
Deposit date:2017-11-23
Release date:2018-10-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res., 46, 2018
5YV3
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BU of 5yv3 by Molmil
DNA polymerase IV - DNA ternary complex 7
Descriptor: DIPHOSPHATE, DNA polymerase IV, DTN1, ...
Authors:Kottur, J, Nair, D.T.
Deposit date:2017-11-23
Release date:2018-11-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res., 46, 2018
5YUU
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BU of 5yuu by Molmil
DNA polymerase IV - DNA ternary complex 4
Descriptor: DNA polymerase IV, DTN1, DTN2, ...
Authors:Kottur, J, Nair, D.T.
Deposit date:2017-11-23
Release date:2019-01-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.892 Å)
Cite:Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res., 46, 2018
5YUX
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BU of 5yux by Molmil
DNA polymerase IV - DNA ternary complex 8
Descriptor: DIPHOSPHATE, DNA polymerase IV, DTN1, ...
Authors:Kottur, J, Nair, D.T.
Deposit date:2017-11-23
Release date:2018-12-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res., 46, 2018
5YV2
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BU of 5yv2 by Molmil
DNA polymerase IV - DNA ternary complex 14
Descriptor: DNA polymerase IV, DTN1, DTN2, ...
Authors:Kottur, J, Nair, D.T.
Deposit date:2017-11-23
Release date:2018-09-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res., 46, 2018
5YYD
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BU of 5yyd by Molmil
DNA polymerase IV - ternary complex 15
Descriptor: 5'-O-[hydroxy{[hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]thymidine, DNA polymerase IV, DTN2, ...
Authors:Kottur, J, Nair, D.T.
Deposit date:2017-12-08
Release date:2018-09-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res., 46, 2018

 

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