Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 109 results

1W3B
DownloadVisualize
BU of 1w3b by Molmil
The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Descriptor: CALCIUM ION, UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE 110
Authors:Jinek, M, Rehwinkel, J, Lazarus, B.D, Izaurralde, E, Hanover, J.A, Conti, E.
Deposit date:2004-07-14
Release date:2004-09-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:The Superhelical Tpr-Repeat Domain of O-Linked Glcnac Transferase Exhibits Structural Similarities to Importin Alpha
Nat.Struct.Mol.Biol., 11, 2004
2X04
DownloadVisualize
BU of 2x04 by Molmil
Crystal structure of the PABC-TNRC6C complex
Descriptor: POLYADENYLATE-BINDING PROTEIN 1, SULFATE ION, TRINUCLEOTIDE REPEAT-CONTAINING GENE 6C PROTEIN
Authors:Jinek, M, Fabian, M.R, Coyle, S.M, Sonenberg, N, Doudna, J.A.
Deposit date:2009-12-04
Release date:2010-01-19
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Structural Insights Into the Human Gw182-Pabc Interaction in Microrna-Mediated Deadenylation
Nat.Struct.Mol.Biol., 17, 2010
2J0B
DownloadVisualize
BU of 2j0b by Molmil
Structure of the catalytic domain of mouse Manic Fringe in complex with UDP and manganese
Descriptor: BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE MANIC FRINGE, MANGANESE (II) ION, POTASSIUM ION, ...
Authors:Jinek, M, Chen, Y.-W, Clausen, H, Cohen, S.M, Conti, E.
Deposit date:2006-08-01
Release date:2006-09-04
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Insights Into the Notch-Modifying Glycosyltransferase Fringe
Nat.Struct.Mol.Biol., 13, 2006
2J0A
DownloadVisualize
BU of 2j0a by Molmil
Structure of the catalytic domain of mouse Manic Fringe
Descriptor: BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE MANIC FRINGE, POTASSIUM ION, SULFATE ION
Authors:Jinek, M, Chen, Y.-W, Clausen, H, Cohen, S.M, Conti, E.
Deposit date:2006-08-01
Release date:2006-09-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Insights Into the Notch-Modifying Glycosyltransferase Fringe
Nat.Struct.Mol.Biol., 13, 2006
2VXG
DownloadVisualize
BU of 2vxg by Molmil
Crystal structure of the conserved C-terminal region of Ge-1
Descriptor: CG6181-PA, ISOFORM A
Authors:Jinek, M, Eulalio, A, Lingel, A, Helms, S, Conti, E, Izaurralde, E.
Deposit date:2008-07-04
Release date:2008-09-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The C-Terminal Region of Ge-1 Presents Conserved Structural Features Required for P-Body Localization.
RNA, 14, 2008
6F9S
DownloadVisualize
BU of 6f9s by Molmil
Crystal structure of the C-terminal RecA domain of DDX6 in complex with a conserved peptide from LSM14
Descriptor: Cytokinesis, Apoptosis, RNA-associated, ...
Authors:Jinek, M, Brandmann, T.
Deposit date:2017-12-15
Release date:2018-03-21
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.03 Å)
Cite:Molecular architecture of LSM14 interactions involved in the assembly of mRNA silencing complexes.
EMBO J., 37, 2018
6FDL
DownloadVisualize
BU of 6fdl by Molmil
Crystal structure of the NYN domain of human MARF1
Descriptor: Meiosis regulator and mRNA stability factor 1
Authors:Jinek, M, Brandmann, T.
Deposit date:2017-12-26
Release date:2018-11-07
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Human MARF1 is an endoribonuclease that interacts with the DCP1:2 decapping complex and degrades target mRNAs.
Nucleic Acids Res., 46, 2018
6I1K
DownloadVisualize
BU of 6i1k by Molmil
Crystal structure of catalytically inactive FnCas12a in complex with a crRNA guide and a dsDNA target
Descriptor: 1,2-ETHANEDIOL, CRISPR-associated endonuclease Cas12a, DNA non-target strand (33-MER), ...
Authors:Jinek, M, Swarts, D.C.
Deposit date:2018-10-29
Release date:2019-01-23
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Mechanistic Insights into the cis- and trans-Acting DNase Activities of Cas12a.
Mol. Cell, 73, 2019
6I1L
DownloadVisualize
BU of 6i1l by Molmil
Crystal structure of FnCas12a in complex with a crRNA guide and ssDNA target
Descriptor: CITRIC ACID, CRISPR-associated endonuclease Cas12a, MAGNESIUM ION, ...
Authors:Jinek, M, Swarts, D.C.
Deposit date:2018-10-29
Release date:2019-01-23
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.98 Å)
Cite:Mechanistic Insights into the cis- and trans-Acting DNase Activities of Cas12a.
Mol. Cell, 73, 2019
2Y35
DownloadVisualize
BU of 2y35 by Molmil
Crystal structure of Xrn1-substrate complex
Descriptor: DT11 (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP)-3', LD22664P, MAGNESIUM ION
Authors:Jinek, M, Coyle, S.M, Doudna, J.A.
Deposit date:2010-12-18
Release date:2011-03-16
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Coupled 5' Nucleotide Recognition and Processivity in Xrn1-Mediated Mrna Decay.
Mol.Cell, 41, 2011
4CMQ
DownloadVisualize
BU of 4cmq by Molmil
Crystal structure of Mn-bound S.pyogenes Cas9
Descriptor: CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1, MANGANESE (II) ION, SULFATE ION
Authors:Jinek, M, Jiang, F, Taylor, D.W, Sternberg, S.H, Kaya, E, Ma, E, Anders, C, Hauer, M, Zhou, K, Lin, S, Kaplan, M, Iavarone, A.T, Charpentier, E, Nogales, E, Doudna, J.A.
Deposit date:2014-01-17
Release date:2014-02-12
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:Structures of Cas9 Endonucleases Reveal RNA- Mediated Conformational Activation
Science, 343, 2014
4CMP
DownloadVisualize
BU of 4cmp by Molmil
Crystal structure of S. pyogenes Cas9
Descriptor: CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1, MAGNESIUM ION, SULFATE ION
Authors:Jinek, M, Jiang, F, Taylor, D.W, Sternberg, S.H, Kaya, E, Ma, E, Anders, C, Hauer, M, Zhou, K, Lin, S, Kaplan, M, Iavarone, A.T, Charpentier, E, Nogales, E, Doudna, J.A.
Deposit date:2014-01-16
Release date:2014-02-12
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Structures of Cas9 Endonucleases Reveal RNA-Mediated Conformational Activation.
Science, 343, 2014
4C8Z
DownloadVisualize
BU of 4c8z by Molmil
Cas6 (TTHA0078) product complex
Descriptor: CAS6A, POTASSIUM ION, R1 REPEAT RNA CLEAVAGE PRODUCT, ...
Authors:Jinek, M, Niewoehner, O, Doudna, J.A.
Deposit date:2013-10-02
Release date:2013-11-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.503 Å)
Cite:Evolution of Crispr RNA Recognition and Processing by Cas6 Endonucleases.
Nucleic Acids Res., 42, 2014
4C8Y
DownloadVisualize
BU of 4c8y by Molmil
Cas6 (TTHA0078) substrate mimic complex
Descriptor: CAS6A, R1 REPEAT RNA SUBSTRATE MIMIC, SULFATE ION
Authors:Jinek, M, Niewoehner, O, Doudna, J.A.
Deposit date:2013-10-02
Release date:2013-11-06
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Evolution of Crispr RNA Recognition and Processing by Cas6 Endonucleases.
Nucleic Acids Res., 42, 2014
4C97
DownloadVisualize
BU of 4c97 by Molmil
Cas6 (TTHA0078) H37A mutant
Descriptor: CAS6A, SULFATE ION
Authors:Jinek, M, Niewoehner, O, Doudna, J.A.
Deposit date:2013-10-02
Release date:2013-11-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Evolution of Crispr RNA Recognition and Processing by Cas6 Endonucleases.
Nucleic Acids Res., 42, 2014
4C9D
DownloadVisualize
BU of 4c9d by Molmil
Cas6 (TTHB231) product complex
Descriptor: CAS6B, R3 REPEAT RNA CLEAVAGE PRODUCT
Authors:Jinek, M, Niewoehner, O, Doudna, J.A.
Deposit date:2013-10-02
Release date:2013-11-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Evolution of CRISPR RNA recognition and processing by Cas6 endonucleases.
Nucleic Acids Res., 42, 2014
4C98
DownloadVisualize
BU of 4c98 by Molmil
Thermus thermophilus Cas6 (TTHB231)
Descriptor: CAS6B, ZINC ION
Authors:Jinek, M, Niewoehner, O, Doudna, J.A.
Deposit date:2013-10-02
Release date:2013-11-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Evolution of Crispr RNA Recognition and Processing by Cas6 Endonucleases.
Nucleic Acids Res., 42, 2014
9EZY
DownloadVisualize
BU of 9ezy by Molmil
Vibrio cholerae DdmD-DdmE holo complex
Descriptor: 14 nucleotide DNA guide with terminal 5' phosphate, Helicase/UvrB N-terminal domain-containing protein, MAGNESIUM ION, ...
Authors:Loeff, L, Jinek, M.
Deposit date:2024-04-14
Release date:2024-09-04
Method:ELECTRON MICROSCOPY (2.56 Å)
Cite:Molecular mechanism of plasmid elimination by the DdmDE defense system.
Science, 385, 2024
9EZX
DownloadVisualize
BU of 9ezx by Molmil
Vibrio cholerae DdmD apo complex
Descriptor: Helicase/UvrB N-terminal domain-containing protein
Authors:Loeff, L, Jinek, M.
Deposit date:2024-04-14
Release date:2024-06-19
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (2.55 Å)
Cite:Molecular mechanism of plasmid elimination by the DdmDE defense system.
Science, 385, 2024
6TUG
DownloadVisualize
BU of 6tug by Molmil
Enterococcus italicus Csm6 bound to cyclic hexa-2'-fluoro-hexa-dAMP
Descriptor: 2'-deoxy-2'-fluoroadenosine 5'-(dihydrogen phosphate), CRISPR system endoribonuclease Csm6, SULFATE ION
Authors:Garcia-Doval, C, Jinek, M.
Deposit date:2020-01-07
Release date:2020-02-26
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Activation and self-inactivation mechanisms of the cyclic oligoadenylate-dependent CRISPR ribonuclease Csm6.
Nat Commun, 11, 2020
6O16
DownloadVisualize
BU of 6o16 by Molmil
Crystal structure of murine DHX37 in complex with RNA
Descriptor: DEAH (Asp-Glu-Ala-His) box polypeptide 37, RNA (5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')
Authors:Boneberg, F, Brandmann, T, Kobel, L, van den Heuvel, J, Bargsten, K, Bammert, L, Kutay, U, Jinek, M.
Deposit date:2019-02-18
Release date:2019-04-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.875 Å)
Cite:Molecular mechanism of the RNA helicase DHX37 and its activation by UTP14A in ribosome biogenesis.
Rna, 25, 2019
8BD5
DownloadVisualize
BU of 8bd5 by Molmil
Cas12k-sgRNA-dsDNA-S15-TniQ-TnsC transposon recruitment complex
Descriptor: 30S ribosomal protein S15, ADENOSINE-5'-TRIPHOSPHATE, DNA non-target strand, ...
Authors:Schmitz, M, Querques, I, Oberli, S, Chanez, C, Jinek, M.
Deposit date:2022-10-18
Release date:2022-12-28
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural basis for the assembly of the type V CRISPR-associated transposon complex.
Cell, 185, 2022
8BD4
DownloadVisualize
BU of 8bd4 by Molmil
TniQ-capped Tns-ATP-dsDNA complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DNA (5'-D(P*GP*AP*TP*CP*GP*AP*TP*CP*GP*AP*TP*CP*GP*AP*TP*C)-3'), MAGNESIUM ION, ...
Authors:Querques, I, Schmitz, M, Oberli, S, Chanez, C, Jinek, M.
Deposit date:2022-10-18
Release date:2022-12-28
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.44 Å)
Cite:Structural basis for the assembly of the type V CRISPR-associated transposon complex.
Cell, 185, 2022
8BD6
DownloadVisualize
BU of 8bd6 by Molmil
Cas12k-sgRNA-dsDNA-TnsC non-productive complex.
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cas12k, DNA, ...
Authors:Schmitz, M, Querques, I, Oberli, S, Chanez, C, Jinek, M.
Deposit date:2022-10-18
Release date:2022-12-28
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural basis for the assembly of the type V CRISPR-associated transposon complex.
Cell, 185, 2022
8QLP
DownloadVisualize
BU of 8qlp by Molmil
CryoEM structure of the RNA/DNA bound SPARTA (BabAgo/TIR-APAZ) tetrameric complex
Descriptor: DNA (5'-D(*AP*CP*TP*AP*AP*TP*AP*GP*AP*TP*TP*AP*GP*AP*GP*CP*CP*GP*TP*C)-3'), MAGNESIUM ION, RNA (5'-R(*AP*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*AP*GP*U)-3'), ...
Authors:Finocchio, G, Koopal, B, Potocnik, A, Heijstek, C, Jinek, M, Swarts, D.
Deposit date:2023-09-20
Release date:2024-01-31
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.14 Å)
Cite:Target DNA-dependent activation mechanism of the prokaryotic immune system SPARTA.
Nucleic Acids Res., 52, 2024

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon