Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 30 件

4YWZ
DownloadVisualize
BU of 4ywz by Molmil
Crystal structure of the extracellular receptor domain of the essential sensor kinase WalK from Staphylococcus aureus
分子名称: Sensor protein kinase WalK
著者Ji, Q, Wawrzak, Z, He, C.
登録日2015-03-21
公開日2016-03-30
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structure and mechanism of the essential two-component signal-transduction system WalKR in Staphylococcus aureus.
Nat Commun, 7, 2016
4HQM
DownloadVisualize
BU of 4hqm by Molmil
The crystal structure of QsrR-menadione complex
分子名称: 2-methylnaphthalene-1,4-diol, QsrR protein
著者Ji, Q, Zhang, L, Jones, M.B, Sun, F, Deng, X, Liang, H, Brugarolas, P, Gao, N, Peterson, S.N, Lan, L, Bae, T, He, C.
登録日2012-10-25
公開日2013-03-06
最終更新日2013-05-22
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Molecular mechanism of quinone signaling mediated through S-quinonization of a YodB family repressor QsrR.
Proc.Natl.Acad.Sci.USA, 110, 2013
5YHG
DownloadVisualize
BU of 5yhg by Molmil
The crystal structure of Staphylococcus aureus CntA in complex with staphylopine and zinc
分子名称: (2~{S})-4-[[(2~{R})-3-(1~{H}-imidazol-4-yl)-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]-2-[[(2~{S})-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]butanoic acid, ACETATE ION, CHLORIDE ION, ...
著者Ji, Q, Song, L.
登録日2017-09-28
公開日2018-03-28
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Mechanistic insights into staphylopine-mediated metal acquisition
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5YH8
DownloadVisualize
BU of 5yh8 by Molmil
The crystal structure of Staphylococcus aureus CntA in complex with staphylopine and nickel
分子名称: (2~{S})-4-[[(2~{R})-3-(1~{H}-imidazol-4-yl)-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]-2-[[(2~{S})-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]butanoic acid, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
著者Ji, Q, Song, L.
登録日2017-09-27
公開日2018-03-28
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.12 Å)
主引用文献Mechanistic insights into staphylopine-mediated metal acquisition
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6LXH
DownloadVisualize
BU of 6lxh by Molmil
Staphylococcus aureus surface protein-sdrc
分子名称: Ser-Asp rich fibrinogen-binding, bone sialoprotein-binding protein
著者Pi, Y, Ji, Q.
登録日2020-02-11
公開日2020-04-22
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Structural Basis ofStaphylococcus aureusSurface Protein SdrC.
Biochemistry, 59, 2020
6M0W
DownloadVisualize
BU of 6m0w by Molmil
Crystal structure of Streptococcus thermophilus Cas9 in complex with the AGAA PAM
分子名称: CRISPR-associated endonuclease Cas9 1, DNA (28-MER), DNA (5'-D(*AP*AP*AP*GP*AP*AP*GP*C)-3'), ...
著者Zhang, Y, Zhang, H, Xu, X, Wang, Y, Chen, W, Wang, Y, Wu, Z, Tang, N, Wang, Y, Zhao, S, Gan, J, Ji, Q.
登録日2020-02-23
公開日2020-09-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.76 Å)
主引用文献Catalytic-state structure and engineering of Streptococcus thermophilus Cas9
Nat Catal, 2020
6M0X
DownloadVisualize
BU of 6m0x by Molmil
Crystal structure of Streptococcus thermophilus Cas9 in complex with AGGA PAM
分子名称: BARIUM ION, CRISPR-associated endonuclease Cas9 1, DNA (28-MER), ...
著者Zhang, Y, Zhang, H, Xu, X, Wang, Y, Chen, W, Wang, Y, Wu, Z, Tang, N, Wang, Y, Zhao, S, Gan, J, Ji, Q.
登録日2020-02-23
公開日2020-09-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.561 Å)
主引用文献Catalytic-state structure and engineering of Streptococcus thermophilus Cas9
Nat Catal, 2020
3T8T
DownloadVisualize
BU of 3t8t by Molmil
Crystal structure of Staphylococcus aureus CymR oxidized form
分子名称: Staphylococcus aureus CymR (oxidized form)
著者He, C, Ji, Q.
登録日2011-08-01
公開日2012-05-16
最終更新日2012-07-18
実験手法X-RAY DIFFRACTION (1.752 Å)
主引用文献Staphylococcus aureus CymR Is a New Thiol-based Oxidation-sensing Regulator of Stress Resistance and Oxidative Response.
J.Biol.Chem., 287, 2012
3T8R
DownloadVisualize
BU of 3t8r by Molmil
Crystal structure of Staphylococcus aureus CymR
分子名称: Staphylococcus aureus CymR
著者He, C, Ji, Q.
登録日2011-08-01
公開日2012-05-16
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Staphylococcus aureus CymR Is a New Thiol-based Oxidation-sensing Regulator of Stress Resistance and Oxidative Response.
J.Biol.Chem., 287, 2012
6M0V
DownloadVisualize
BU of 6m0v by Molmil
Crsytal structure of streptococcus thermophilus Cas9 in complex with the GGAA PAM
分子名称: BARIUM ION, CRISPR-associated endonuclease Cas9 1, DNA (28-MER), ...
著者Zhang, Y, Zhang, H, Xu, X, Wang, Y, Chen, W, Wang, Y, Wu, Z, Tang, N, Wang, Y, Zhao, S, Gan, J, Ji, Q.
登録日2020-02-22
公開日2020-09-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Catalytic-state structure and engineering of Streptococcus thermophilus Cas9
Nat Catal, 2020
6LXS
DownloadVisualize
BU of 6lxs by Molmil
CWA protein-SdrC
分子名称: CALCIUM ION, GLYCEROL, Ser-Asp rich fibrinogen-binding, ...
著者Pi, Y, Ji, Q.
登録日2020-02-11
公開日2020-04-22
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Structural Basis ofStaphylococcus aureusSurface Protein SdrC.
Biochemistry, 59, 2020
4HQE
DownloadVisualize
BU of 4hqe by Molmil
The crystal structure of QsrR-DNA complex
分子名称: DNA (5'-D(*AP*GP*TP*AP*TP*AP*AP*TP*TP*AP*TP*TP*AP*TP*AP*CP*C)-3'), DNA (5'-D(*GP*GP*TP*AP*TP*AP*AP*TP*AP*AP*TP*TP*AP*TP*AP*CP*T)-3'), Transcriptional regulator QsrR
著者He, C, Ji, Q, Zhang, L.
登録日2012-10-25
公開日2013-03-06
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.299 Å)
主引用文献Molecular mechanism of quinone signaling mediated through S-quinonization of a YodB family repressor QsrR.
Proc.Natl.Acad.Sci.USA, 110, 2013
4GXO
DownloadVisualize
BU of 4gxo by Molmil
Crystal structure of Staphylococcus aureus protein SarZ mutant C13E
分子名称: GLYCEROL, MarR family regulatory protein
著者Sun, F, Ding, Y, Ji, Q, Liang, Z, Deng, X, Wong, C.C, Yi, C, Zhang, L, Xie, S, Alvarez, S, Hicks, L.M, Luo, C, Jiang, H, Lan, L, He, C.
登録日2012-09-04
公開日2012-09-26
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Protein cysteine phosphorylation of SarA/MgrA family transcriptional regulators mediates bacterial virulence and antibiotic resistance.
Proc.Natl.Acad.Sci.USA, 109, 2012
4ID7
DownloadVisualize
BU of 4id7 by Molmil
ACK1 kinase in complex with the inhibitor cis-3-[8-amino-1-(4-phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol
分子名称: Activated CDC42 kinase 1, SULFATE ION, cis-3-[8-amino-1-(4-phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol
著者Jin, M, Wang, J, Kleinberg, A, Kadalbajoo, M, Siu, K, Cooke, A, Bittner, M, Yao, Y, Thelemann, A, Ji, Q, Bhagwat, S, Crew, A.P, Pachter, J, Epstein, D, Mulvihill, M.J.
登録日2012-12-11
公開日2013-01-30
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Discovery of potent, selective and orally bioavailable imidazo[1,5-a]pyrazine derived ACK1 inhibitors.
Bioorg.Med.Chem.Lett., 23, 2013
8HUD
DownloadVisualize
BU of 8hud by Molmil
Cryo-EM structure of the EvCas9-sgRNA-target DNA ternary complex
分子名称: CRISPR-associated endonuclease Cas9, Non-target DNA strand, Target DNA strand, ...
著者Tang, N, Wu, Z, Gao, Y, Chen, W, Su, M, Wang, Z, Ji, Q.
登録日2022-12-23
公開日2023-12-27
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (3.43 Å)
主引用文献Molecular Basis and Genome Editing Applications of a Compact Eubacterium ventriosum CRISPR-Cas9 System.
Acs Synth Biol, 13, 2024
5XS9
DownloadVisualize
BU of 5xs9 by Molmil
Crystal structure of Mycobacterium smegmatis BioQ
分子名称: TetR family transcriptional regulator
著者Zhang, Y, Ji, Q, Feng, Y.
登録日2017-06-13
公開日2018-06-27
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural analysis of BioQ suggests a distinct regulatory mechanism for biotin, a nutritional virulence factor in Mycobacterium
To Be Published
5YH5
DownloadVisualize
BU of 5yh5 by Molmil
The crystal structure of Staphylococcus aureus CntA in apo form
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Nickel ABC transporter substrate-binding protein
著者Song, L, Ji, Q.
登録日2017-09-27
公開日2018-03-28
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Mechanistic insights into staphylopine-mediated metal acquisition
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5Y6I
DownloadVisualize
BU of 5y6i by Molmil
Crystal structure of Pseudomonas aeruginosa HmgR
分子名称: Transcriptional regulator KdgR
著者Gu, T, Ji, Q, Liang, H.
登録日2017-08-11
公開日2018-08-15
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.517 Å)
主引用文献Crystal structure of Pseudomonas aeruginosa HmgR
To Be Published
5YHE
DownloadVisualize
BU of 5yhe by Molmil
The crystal structure of Staphylococcus aureus CntA in complex with staphylopine and cobalt
分子名称: (2~{S})-4-[[(2~{R})-3-(1~{H}-imidazol-4-yl)-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]-2-[[(2~{S})-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]butanoic acid, ACETATE ION, CHLORIDE ION, ...
著者Song, L, Ji, Q.
登録日2017-09-28
公開日2018-03-28
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.465 Å)
主引用文献Mechanistic insights into staphylopine-mediated metal acquisition
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
8HR5
DownloadVisualize
BU of 8hr5 by Molmil
Cryo-EM structure of the CnCas12f1-sgRNA-DNA complex
分子名称: DNA (28-MER), DNA (5'-D(*TP*AP*AP*CP*CP*TP*AP*AP*TP*AP*GP*AP*TP*GP*TP*GP*AP*A)-3'), Transposase, ...
著者Li, F, Ji, Q.
登録日2022-12-14
公開日2023-09-06
実験手法ELECTRON MICROSCOPY (3.73 Å)
主引用文献Structure and engineering of miniature Clostridium novyi CRISPR-Cas12f1 with rare C-rich PAM specificity
To Be Published
6K3Z
DownloadVisualize
BU of 6k3z by Molmil
Crystal structure of dCas9 in complex with sgRNA and DNA (TGA PAM)
分子名称: CRISPR-associated endonuclease Cas9, DNA (28-MER), DNA (5'-D(*AP*AP*AP*TP*GP*AP*TP*AP*TP*TP*G)-3'), ...
著者Chen, W, Zhang, H, Zhang, Y, Wang, Y, Gan, J, Ji, Q.
登録日2019-05-22
公開日2019-09-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Molecular basis for the PAM expansion and fidelity enhancement of an evolved Cas9 nuclease.
Plos Biol., 17, 2019
6K4P
DownloadVisualize
BU of 6k4p by Molmil
Crystal structure of xCas9 in complex with sgRNA and DNA (TGG PAM)
分子名称: CRISPR-associated endonuclease Cas9/Csn1, DNA (28-MER), PHOSPHATE ION, ...
著者Chen, W, Zhang, H, Zhang, Y, Wang, Y, Gan, J, Ji, Q.
登録日2019-05-25
公開日2019-09-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Molecular basis for the PAM expansion and fidelity enhancement of an evolved Cas9 nuclease.
Plos Biol., 17, 2019
6K4U
DownloadVisualize
BU of 6k4u by Molmil
Crystal structure of xCas9 in complex with sgRNA and DNA (TGA PAM)
分子名称: CRISPR-associated endonuclease Cas9, non-target DNA, sgRNA, ...
著者Chen, W, Zhang, H, Zhang, Y, Wang, Y, Gan, J, Ji, Q.
登録日2019-05-27
公開日2019-09-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Molecular basis for the PAM expansion and fidelity enhancement of an evolved Cas9 nuclease.
Plos Biol., 17, 2019
6K4Q
DownloadVisualize
BU of 6k4q by Molmil
Crystal structure of xCas9 in complex with sgRNA and DNA (CGG PAM)
分子名称: CRISPR-associated endonuclease Cas9/Csn1, DNA (28-MER), DNA (5'-D(*AP*AP*AP*CP*GP*GP*TP*AP*TP*TP*G)-3'), ...
著者Chen, W, Zhang, H, Zhang, Y, Wang, Y, Gan, J, Ji, Q.
登録日2019-05-26
公開日2019-09-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Molecular basis for the PAM expansion and fidelity enhancement of an evolved Cas9 nuclease.
Plos Biol., 17, 2019
6K57
DownloadVisualize
BU of 6k57 by Molmil
Crystal structure of dCas9 in complex with sgRNA and DNA (CGA PAM)
分子名称: CRISPR-associated endonuclease Cas9, non-target DNA, sgRNA, ...
著者Chen, W, Zhang, H, Zhang, Y, Wang, Y, Gan, J, Ji, Q.
登録日2019-05-28
公開日2019-09-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.98 Å)
主引用文献Molecular basis for the PAM expansion and fidelity enhancement of an evolved Cas9 nuclease.
Plos Biol., 17, 2019

 

12>

226707

件を2024-10-30に公開中

PDB statisticsPDBj update infoContact PDBjnumon