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PDB: 5677 results

3NZS
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Structure-based Optimization of Pyrazolo -Pyrimidine and -Pyridine Inhibitors of PI3-Kinase
Descriptor: 6-(1,1-dioxidothiomorpholin-4-yl)-N-(3-methoxyphenyl)-1-methyl-1H-pyrazolo[3,4-d]pyrimidin-4-amine, Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma isoform
Authors:Murray, J.M, Wiesmann, C.
Deposit date:2010-07-16
Release date:2010-12-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structure-based optimization of pyrazolo-pyrimidine and -pyridine inhibitors of PI3-kinase.
Bioorg.Med.Chem.Lett., 20, 2010
3OA9
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Effector domain of influenza A/Duck/Albany/76 NS1
Descriptor: Non-structural protein 1
Authors:Kerry, P.S, Lewis, A, Hale, B.G, Hass, C, Taylor, M.A, Randall, R.E, Russell, R.J.M.
Deposit date:2010-08-05
Release date:2011-05-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A Transient Homotypic Interaction Model for the Influenza A Virus NS1 Protein Effector Domain.
Plos One, 6, 2011
8HD6
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The relaxed pre-Tet-S1 state of G264A mutated Tetrahymena group I intron with 6nt 3'/5'-exon and 2-aminopurine nucleoside
Descriptor: MAGNESIUM ION, SPERMIDINE, The relaxed pre-Tet-S1 state molecule of co-transcriptional folded G264A mutant Tetrahymena group I intron with 6nt 3'/5'-exon and 2-aminopurine nucleoside
Authors:Luo, B, Zhang, C, Ling, X, Mukherjee, S, Jia, G, Xie, J, Jia, X, Liu, L, Baulin, E.F, Luo, Y, Jiang, L, Dong, H, Wei, X, Bujnicki, J.M, Su, Z.
Deposit date:2022-11-03
Release date:2023-03-29
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.73 Å)
Cite:Cryo-EM reveals dynamics of Tetrahymena group I intron self-splicing
Nat Catal, 2023
6FLA
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BU of 6fla by Molmil
3H5 Fab bound to EDIII of DenV 2 Xtal form 1
Descriptor: CHLORIDE ION, Domain III of Dengue virus 2, GLYCEROL, ...
Authors:Flanagan, A, Renner, M, Grimes, J.M.
Deposit date:2018-01-25
Release date:2018-10-24
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Characterization of a potent and highly unusual minimally enhancing antibody directed against dengue virus.
Nat. Immunol., 19, 2018
8HD7
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The intermediate pre-Tet-S1 state of G264A mutated Tetrahymena group I intron with 6nt 3'/5'-exon and 2-aminopurine nucleoside
Descriptor: MAGNESIUM ION, SPERMIDINE, The intermediate pre-Tet-S1 state molecule of co-transcriptional folded G264A mutant Tetrahymena group I intron with 6nt 3'/5'-exon and 2-aminopurine nucleoside
Authors:Luo, B, Zhang, C, Ling, X, Mukherjee, S, Jia, G, Xie, J, Jia, X, Liu, L, Baulin, E.F, Luo, Y, Jiang, L, Dong, H, Wei, X, Bujnicki, J.M, Su, Z.
Deposit date:2022-11-03
Release date:2023-03-29
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.52 Å)
Cite:Cryo-EM reveals dynamics of Tetrahymena group I intron self-splicing
Nat Catal, 2023
6QX3
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BU of 6qx3 by Molmil
Influenza A virus (A/NT/60/1968) polymerase Hetermotrimer in complex with 3'5' cRNA promoter and Nb8205
Descriptor: Nb8205, Polymerase acidic protein, Polymerase basic protein 2, ...
Authors:Carrique, L, Keown, J.R, Fan, H, Fodor, E, Grimes, J.M.
Deposit date:2019-03-07
Release date:2019-09-04
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.79 Å)
Cite:Structures of influenza A virus RNA polymerase offer insight into viral genome replication.
Nature, 573, 2019
6FD3
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BU of 6fd3 by Molmil
Thiophosphorylated PAK3 kinase domain
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Sorrell, F.J, Wang, D, von Delft, F, Bountra, C, Edwards, A.M, Elkins, J.M.
Deposit date:2017-12-21
Release date:2018-01-03
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Solution structures and biophysical analysis of full-length group A PAKs reveal they are monomeric and auto-inhibited incis.
Biochem.J., 476, 2019
6QZH
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BU of 6qzh by Molmil
Structure of the human CC Chemokine Receptor 7 in complex with the intracellular allosteric antagonist Cmp2105 and the insertion protein Sialidase NanA
Descriptor: 3-[[4-[[(1~{R})-2,2-dimethyl-1-(5-methylfuran-2-yl)propyl]amino]-1,1-bis(oxidanylidene)-1,2,5-thiadiazol-3-yl]amino]-~{N},~{N},6-trimethyl-2-oxidanyl-benzamide, C-C chemokine receptor type 7,Sialidase A,C-C chemokine receptor type 7, D(-)-TARTARIC ACID, ...
Authors:Jaeger, K, Bruenle, S, Weinert, T, Guba, W, Muehle, J, Miyazaki, T, Weber, M, Furrer, A, Haenggi, N, Tetaz, T, Huang, C.Y, Mattle, D, Vonach, J.M, Gast, A, Kuglstatter, A, Rudolph, M.G, Nogly, P, Benz, J, Dawson, R.J.P, Standfuss, J.
Deposit date:2019-03-11
Release date:2019-09-04
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Basis for Allosteric Ligand Recognition in the Human CC Chemokine Receptor 7.
Cell, 178, 2019
3NRZ
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BU of 3nrz by Molmil
Crystal Structure of Bovine Xanthine Oxidase in Complex with Hypoxanthine
Descriptor: DIOXOTHIOMOLYBDENUM(VI) ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Cao, H, Pauff, J.M, Hille, R.
Deposit date:2010-07-01
Release date:2010-07-14
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Substrate orientation and catalytic specificity in the action of xanthine oxidase: the sequential hydroxylation of hypoxanthine to uric acid.
J.Biol.Chem., 285, 2010
8HP8
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BU of 8hp8 by Molmil
Crystal Structure of Engineered Endolysin EC340 derived from Gram-Negative Bacteria targeted Bacteriophage
Descriptor: Endolysin mtEC340M
Authors:Wang, J.M, Yoon, W.S, Seo, M.D.
Deposit date:2022-12-12
Release date:2023-05-17
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.397 Å)
Cite:Crystal structure of the engineered endolysin mtEC340M.
Acta Crystallogr.,Sect.F, 79, 2023
6R17
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BU of 6r17 by Molmil
Crystal structure of the SYCE2-TEX12 delta-Ctip 2:2 complex
Descriptor: Synaptonemal complex central element protein 2, Testis-expressed protein 12
Authors:Dunce, J.M, Salmon, L.J, Davies, O.R.
Deposit date:2019-03-13
Release date:2020-09-30
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.424 Å)
Cite:Structural basis of meiotic chromosome synaptic elongation through hierarchical fibrous assembly of SYCE2-TEX12.
Nat.Struct.Mol.Biol., 28, 2021
6R2F
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BU of 6r2f by Molmil
Crystal structure of TEX12 F102A F109E V116A in an alternative conformation
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, Testis-expressed protein 12
Authors:Dunce, J.M, Davies, O.R.
Deposit date:2019-03-17
Release date:2020-04-01
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Meiotic synaptonemal complex extension through fibrous assembly of SYCE2-TEX12
To Be Published
6FLB
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BU of 6flb by Molmil
3H5 Fab bound to EDIII of DenV 2 Xtal form 2
Descriptor: CHLORIDE ION, Domain III of Dengue virus 2, GLYCEROL, ...
Authors:Flanagan, A, Renner, M, Grimes, J.M.
Deposit date:2018-01-25
Release date:2018-10-24
Last modified:2018-10-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Characterization of a potent and highly unusual minimally enhancing antibody directed against dengue virus.
Nat. Immunol., 19, 2018
6FLC
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BU of 6flc by Molmil
2C8 Fab bound to EDIII of DenV 2
Descriptor: Domain III of Dengue virus 2, GLYCEROL, Heavy chain of 2C8 Fab, ...
Authors:Flanagan, A, Renner, M, Grimes, J.M.
Deposit date:2018-01-25
Release date:2018-10-24
Last modified:2018-10-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:Characterization of a potent and highly unusual minimally enhancing antibody directed against dengue virus.
Nat. Immunol., 19, 2018
3NUH
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BU of 3nuh by Molmil
A domain insertion in E. coli GyrB adopts a novel fold that plays a critical role in gyrase function
Descriptor: DNA gyrase subunit A, DNA gyrase subunit B, MAGNESIUM ION
Authors:Schoeffler, A.J, May, A.P, Berger, J.M.
Deposit date:2010-07-06
Release date:2010-08-11
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.103 Å)
Cite:A domain insertion in Escherichia coli GyrB adopts a novel fold that plays a critical role in gyrase function.
Nucleic Acids Res., 38, 2010
3OE3
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BU of 3oe3 by Molmil
Crystal structure of PliC-St, periplasmic lysozyme inhibitor of C-type lysozyme from Salmonella typhimurium
Descriptor: Putative periplasmic protein, SODIUM ION
Authors:Leysen, S, Van Herreweghe, J.M, Callewaert, L, Heirbaut, M, Buntinx, P, Michiels, C.W, Strelkov, S.V.
Deposit date:2010-08-12
Release date:2010-12-22
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Molecular Basis of Bacterial Defense against Host Lysozymes: X-ray Structures of Periplasmic Lysozyme Inhibitors PliI and PliC.
J.Mol.Biol., 405, 2011
5NCV
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BU of 5ncv by Molmil
Crystal Structure of Cytochrome c in complex with p-Methylphosphonatocalix[4]arene
Descriptor: CHLORIDE ION, Cytochrome c iso-1, HEME C, ...
Authors:Alex, J.M, Rennie, M.L, Crowley, P.B.
Deposit date:2017-03-06
Release date:2018-03-14
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Phosphonated Calixarene as a ""Molecular Glue"" for Protein Crystallization
Cryst.Growth Des., 18, 2018
5ND2
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BU of 5nd2 by Molmil
Microtubule-bound MKLP2 motor domain in the presence of ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Atherton, J, Yu, I.M, Cook, A, Muretta, J.M, Joseph, A.P, Major, J, Sourigues, Y, Clause, J, Topf, M, Rosenfeld, S.S, Houdusse, A, Moores, C.A.
Deposit date:2017-03-07
Release date:2017-10-04
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (5.8 Å)
Cite:The divergent mitotic kinesin MKLP2 exhibits atypical structure and mechanochemistry.
Elife, 6, 2017
5NAV
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BU of 5nav by Molmil
Crystal structure of the double mutant (Cys211Ser/Cys292Ser) 6-phospho-b-D-glucosidase from Lactobacillus plantarum
Descriptor: Beta-galactosidase
Authors:Acebron, I, Mancheno, J.M.
Deposit date:2017-02-28
Release date:2017-08-02
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis of the substrate specificity and instability in solution of a glycosidase from Lactobacillus plantarum.
Biochim. Biophys. Acta, 1865, 2017
6FQ3
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BU of 6fq3 by Molmil
Crystal structure of Danio rerio Lin41 filamin-NHL domains in complex with lin-29A 5'UTR 13mer RNA
Descriptor: CHLORIDE ION, E3 ubiquitin-protein ligase TRIM71, RNA (5'-R(*GP*GP*AP*GP*UP*CP*CP*AP*AP*CP*UP*CP*C)-3')
Authors:Kumari, P, Aeschimann, F, Gaidatzis, D, Keusch, J.J, Ghosh, P, Neagu, A, Pachulska-Wieczorek, K, Bujnicki, J.M, Gut, H, Grosshans, H, Ciosk, R.
Deposit date:2018-02-13
Release date:2018-05-09
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Evolutionary plasticity of the NHL domain underlies distinct solutions to RNA recognition.
Nat Commun, 9, 2018
5ND4
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BU of 5nd4 by Molmil
Microtubule-bound MKLP2 motor domain in the presence of ADP.AlFx
Descriptor: ADENOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Atherton, J, Yu, I.-M, Cook, A, Muretta, J.M, Joseph, A.P, Major, J, Sourigues, Y, Clause, J, Topf, M, Rosenfeld, S.S, Houdusse, A, Moores, C.A.
Deposit date:2017-03-07
Release date:2017-10-04
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:The divergent mitotic kinesin MKLP2 exhibits atypical structure and mechanochemistry.
Elife, 6, 2017
5NON
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BU of 5non by Molmil
Structure of truncated Norcoclaurine Synthase from Thalictrum flavum with product mimic
Descriptor: 4-[2-[2-(4-methoxyphenyl)ethylamino]ethyl]benzene-1,2-diol, S-norcoclaurine synthase
Authors:Sula, A, Lichman, B.R, Pesnot, T, Ward, J.M, Hailes, H.C, Keep, N.H.
Deposit date:2017-04-12
Release date:2017-09-27
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural Evidence for the Dopamine-First Mechanism of Norcoclaurine Synthase.
Biochemistry, 56, 2017
5N7B
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BU of 5n7b by Molmil
Understanding the singular conformational landscape of the Tn antigens: Sulfur-for- oxygen substitution in the glycosidic linkage provides new insights into molecular recognition by an antibody
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-alpha-D-galactopyranose, APD(CG6)RP(NH2) peptide, ...
Authors:Companon, I, Martinez-Saez, N, Castro-Lopez, J, Jimenez-Barbero, J, Bernardes, G.J.L, Busto, J.H, Avenoza, A, Jimenez-Oses, G, Hurtado-Guerrero, R, Peregrina, J.M, Corzana, F.
Deposit date:2017-02-20
Release date:2018-06-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure-Based Design of Potent Tumor-Associated Antigens: Modulation of Peptide Presentation by Single-Atom O/S or O/Se Substitutions at the Glycosidic Linkage.
J.Am.Chem.Soc., 141, 2019
5ND3
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BU of 5nd3 by Molmil
Microtubule-bound MKLP2 motor domain in the with no nucleotide
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, Kinesin-like protein KIF20A, ...
Authors:Atherton, J, Yu, I.M, Cook, A, Muretta, J.M, Joseph, A.P, Major, J, Sourigues, Y, Clause, J, Topf, M, Rosenfeld, S.S, Houdusse, A, Moores, C.A.
Deposit date:2017-03-07
Release date:2017-10-04
Method:ELECTRON MICROSCOPY (6.1 Å)
Cite:The divergent mitotic kinesin MKLP2 exhibits atypical structure and mechanochemistry.
Elife, 6, 2017
5NQA
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BU of 5nqa by Molmil
Crystal structure of GalNAc-T4 in complex with the monoglycopeptide 3
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-galactopyranose, GLYCEROL, ...
Authors:de las Rivas, M, Lira-Navarrete, E, Daniel, E.J.P, Companon, I, Coelho, H, Diniz, A, Jimenez-Barbero, J, Peregrina, J.M, Clausen, H, Corzana, F, Marcelo, F, Jimenez-Oses, G, Gerken, T.A, Hurtado-Guerrero, R.
Deposit date:2017-04-19
Release date:2017-12-20
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The interdomain flexible linker of the polypeptide GalNAc transferases dictates their long-range glycosylation preferences.
Nat Commun, 8, 2017

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