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PDB: 5677 results

3DUP
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BU of 3dup by Molmil
Crystal structure of mutt/nudix family hydrolase from rhodospirillum rubrum atcc 11170
Descriptor: GLYCEROL, MutT/nudix family protein, PHOSPHATE ION
Authors:Patskovsky, Y, Ramagopal, U.A, Toro, R, Freeman, J, Chang, S, Groshong, C, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-07-17
Release date:2008-09-02
Last modified:2021-02-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Mutt/Nudix Family Hydrolase from Rhodospirillum Rubrum
To be Published
2FMQ
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BU of 2fmq by Molmil
Sodium in active site of DNA Polymerase Beta
Descriptor: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, 5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3', ...
Authors:Batra, V.K, Beard, W.A, Shock, D.D, Krahn, J.M, Pedersen, L.C, Wilson, S.H.
Deposit date:2006-01-09
Release date:2006-04-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Magnesium-induced assembly of a complete DNA polymerase catalytic complex.
Structure, 14, 2006
3ZHA
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BU of 3zha by Molmil
Molecular basis for the action of the collagen-specific chaperone Hsp47 SERPINH1 and its structure-specific client recognition.
Descriptor: COLLAGEN MODEL PEPTIDE 18-T8R11, HSP47, SUCCINIC ACID
Authors:Widmer, C, Gebauer, J.M, Baumann, U.
Deposit date:2012-12-20
Release date:2013-01-09
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Molecular Basis for the Action of the Collagen-Specific Chaperone Hsp47/Serpinh1 and its Structure-Specific Client Recognition.
Proc.Natl.Acad.Sci.USA, 109, 2012
1L5B
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BU of 1l5b by Molmil
DOMAIN-SWAPPED CYANOVIRIN-N DIMER
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, SODIUM ION, cyanovirin-N
Authors:Barrientos, L.G, Louis, J.M, Botos, I, Mori, T, Han, Z, O'Keefe, B.R, Boyd, M.R, Wlodawer, A, Gronenborn, A.M.
Deposit date:2002-03-06
Release date:2002-05-22
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:The domain-swapped dimer of cyanovirin-N is in a metastable folded state: reconciliation of X-ray and NMR structures.
Structure, 10, 2002
3QK7
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BU of 3qk7 by Molmil
Crystal structure of putative Transcriptional regulator from Yersinia pestis biovar Microtus str. 91001
Descriptor: Transcriptional regulators
Authors:Malashkevich, V.N, Toro, R, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2011-01-31
Release date:2011-02-09
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of putative Transcriptional regulator from Yersinia pestis biovar Microtus str. 91001
To be Published
2FO0
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BU of 2fo0 by Molmil
Organization of the SH3-SH2 Unit in Active and Inactive Forms of the c-Abl Tyrosine Kinase
Descriptor: 6-(2,6-DICHLOROPHENYL)-2-{[3-(HYDROXYMETHYL)PHENYL]AMINO}-8-METHYLPYRIDO[2,3-D]PYRIMIDIN-7(8H)-ONE, GLYCEROL, MYRISTIC ACID, ...
Authors:Nagar, B, Hantschel, O, Seeliger, M, Davies, J.M, Weis, W.I, Superti-Furga, G, Kuriyan, J.
Deposit date:2006-01-12
Release date:2006-03-21
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Organization of the SH3-SH2 unit in active and inactive forms of the c-Abl tyrosine kinase.
Mol.Cell, 21, 2006
3DXL
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BU of 3dxl by Molmil
Crystal structure of AeD7 from Aedes Aegypti
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Allergen Aed a 2, CHLORIDE ION, ...
Authors:Andersen, J.F, Calvo, E, Mans, B.J, Ribeiro, J.M.
Deposit date:2008-07-24
Release date:2009-02-03
Last modified:2021-03-31
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Multifunctionality and mechanism of ligand binding in a mosquito antiinflammatory protein
Proc.Natl.Acad.Sci.USA, 106, 2009
3ZON
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BU of 3zon by Molmil
Human TYK2 pseudokinase domain bound to a kinase inhibitor
Descriptor: 5-PHENYL-2-UREIDOTHIOPHENE-3-CARBOXAMIDE, NON-RECEPTOR TYROSINE-PROTEIN KINASE TYK2
Authors:Elkins, J.M, Wang, J, Krojer, T, Savitsky, P, Chalk, R, Daga, N, Salah, E, Berridge, G, Picaud, S, von Delft, F, Bountra, C, Edwards, A, Knapp, S.
Deposit date:2013-02-22
Release date:2013-04-10
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Human Tyk2 Pseudokinase Domain Bound to a Kinase Inhibitor
To be Published
3DY9
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BU of 3dy9 by Molmil
Crystal structure of AeD7 potassium bromide soak
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BROMIDE ION, D7 protein, ...
Authors:Andersen, J.F, Calvo, E, Mans, B.J, Ribeiro, J.M.
Deposit date:2008-07-25
Release date:2009-02-03
Last modified:2021-03-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Multifunctionality and mechanism of ligand binding in a mosquito antiinflammatory protein
Proc.Natl.Acad.Sci.USA, 106, 2009
1QHQ
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BU of 1qhq by Molmil
AURACYANIN, A BLUE COPPER PROTEIN FROM THE GREEN THERMOPHILIC PHOTOSYNTHETIC BACTERIUM CHLOROFLEXUS AURANTIACUS
Descriptor: CHLORIDE ION, COPPER (II) ION, PROTEIN (AURACYANIN), ...
Authors:Bond, C.S, Blankenship, R.E, Freeman, H.C, Guss, J.M, Maher, M, Selvaraj, F, Wilce, M.C.J, Willingham, K.
Deposit date:1999-05-25
Release date:2001-03-07
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of auracyanin, a "blue" copper protein from the green thermophilic photosynthetic bacterium Chloroflexus aurantiacus.
J.Mol.Biol., 306, 2001
1LJL
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BU of 1ljl by Molmil
Wild Type pI258 S. aureus arsenate reductase
Descriptor: POTASSIUM ION, arsenate reductase
Authors:Messens, J, Martins, J.C, Van Belle, K, Brosens, E, Desmyter, A, De Gieter, M, Wieruszeski, J.M, Willem, R, Wyns, L, Zegers, I.
Deposit date:2002-04-21
Release date:2002-08-07
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:All intermediates of the arsenate reductase mechanism, including an intramolecular dynamic disulfide cascade.
Proc.Natl.Acad.Sci.USA, 99, 2002
3HSL
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BU of 3hsl by Molmil
The Crystal Structure of PF-8, the DNA Polymerase Accessory Subunit from Kaposi's Sarcoma-Associated Herpesvirus
Descriptor: ORF59
Authors:Baltz, J.L, Filman, D.J, Ciustea, M, Silverman, J.E.Y, Lautenschlager, C.L, Coen, D.M, Ricciardi, R.P, Hogle, J.M.
Deposit date:2009-06-10
Release date:2009-11-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The crystal structure of PF-8, the DNA polymerase accessory subunit from Kaposi's sarcoma-associated herpesvirus.
J.Virol., 83, 2009
2F2K
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BU of 2f2k by Molmil
Aldose reductase tertiary complex with NADPH and DEG
Descriptor: Aldose reductase, GAMMA-GLUTAMYL-S-(1,2-DICARBOXYETHYL)CYSTEINYLGLYCINE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Singh, R, White, M.A, Ramana, K.V, Petrash, J.M, Watowich, S.J, Bhatnagar, A, Srivastava, S.K.
Deposit date:2005-11-17
Release date:2006-05-16
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structure of a glutathione conjugate bound to the active site of aldose reductase.
Proteins, 64, 2006
3HSS
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BU of 3hss by Molmil
A higher resolution structure of Rv0554 from Mycobacterium tuberculosis complexed with malonic acid
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ...
Authors:Johnston, J.M, Baker, E.N.
Deposit date:2009-06-10
Release date:2010-05-26
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and functional analysis of Rv0554 from Mycobacterium tuberculosis: testing a putative role in menaquinone biosynthesis.
Acta Crystallogr.,Sect.D, 66, 2010
3ZXN
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BU of 3zxn by Molmil
Moorella thermoacetica RsbS S58E
Descriptor: ANTI-SIGMA-FACTOR ANTAGONIST (STAS) DOMAIN PROTEIN, THIOCYANATE ION
Authors:Quin, M.B, Berrisford, J.M, Newman, J.A, Basle, A, Lewis, R.J, Marles-Wright, J.
Deposit date:2011-08-12
Release date:2012-02-22
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Bacterial Stressosome: A Modular System that Has Been Adapted to Control Secondary Messenger Signaling.
Structure, 20, 2012
3QSI
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BU of 3qsi by Molmil
Nickel binding domain of NikR from Helicobacter pylori disclosing partial metal occupancy
Descriptor: NICKEL (II) ION, NikR nickel-responsive regulator, SULFATE ION
Authors:Gonzalez, J.M, Pozharski, E.
Deposit date:2011-02-21
Release date:2012-04-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.08 Å)
Cite:Ni(II) coordination to mixed sites modulates DNA binding of HpNikR via a long-range effect.
Proc.Natl.Acad.Sci.USA, 109, 2012
1PM2
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BU of 1pm2 by Molmil
CRYSTAL STRUCTURE OF MANGANESE SUBSTITUTED R2-D84E (D84E MUTANT OF THE R2 SUBUNIT OF E. COLI RIBONUCLEOTIDE REDUCTASE)
Descriptor: MANGANESE (II) ION, MERCURY (II) ION, Ribonucleoside-diphosphate reductase 1 beta chain
Authors:Voegtli, W.C, Sommerhalter, M, Baldwin, J, Saleh, L, Bollinger Jr, J.M, Rosenzweig, A.C.
Deposit date:2003-06-09
Release date:2004-01-13
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Variable coordination geometries at the diiron(II) active site of ribonucleotide reductase R2.
J.Am.Chem.Soc., 125, 2003
2FCH
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BU of 2fch by Molmil
Crystal Structure of Thioredoxin Mutant G74S
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Thioredoxin 1
Authors:Gavira, J.A, Perez-Jimenez, R, Ibarra-Molero, B, Sanchez-Ruiz, J.M.
Deposit date:2005-12-12
Release date:2005-12-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of Thioredoxin Mutant G74S
To be Published
1PXE
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BU of 1pxe by Molmil
Solution Structure of a CCHHC Domain of Neural Zinc Finger Factor-1
Descriptor: ZINC ION, neural zinc finger transcription factor 1
Authors:Berkovits-Cymet, H.J, Amann, B.T, Berg, J.M.
Deposit date:2003-07-03
Release date:2004-02-10
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution Structure of a CCHHC Domain of Neural Zinc Finger Factor-1 and Its Implications for DNA Binding.
Biochemistry, 43, 2004
3E0B
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BU of 3e0b by Molmil
Bacillus anthracis Dihydrofolate Reductase complexed with NADPH and 2,4-diamino-5-(3-(2,5-dimethoxyphenyl)prop-1-ynyl)-6-ethylpyrimidine (UCP120B)
Descriptor: 5-[3-(2,5-dimethoxyphenyl)prop-1-yn-1-yl]-6-ethylpyrimidine-2,4-diamine, Dihydrofolate reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Anderson, A.C, Beierlein, J.M, Frey, K.M.
Deposit date:2008-07-31
Release date:2008-11-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Synthetic and Crystallographic Studies of a New Inhibitor Series Targeting Bacillus anthracis Dihydrofolate Reductase
J.Med.Chem., 51, 2008
3E0L
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BU of 3e0l by Molmil
Computationally Designed Ammelide Deaminase
Descriptor: Guanine deaminase, ZINC ION
Authors:Murphy, P.M, Bolduc, J.M, Gallaher, J.L, Stoddard, B.L, Baker, D.
Deposit date:2008-07-31
Release date:2009-03-03
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Alteration of enzyme specificity by computational loop remodeling and design.
Proc.Natl.Acad.Sci.USA, 106, 2009
1Q10
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BU of 1q10 by Molmil
Ensemble of 40 Structures of the Dimeric Mutant of the B1 Domain of Streptococcal Protein G
Descriptor: Immunoglobulin G binding protein G
Authors:Byeon, I.J, Louis, J.M, Gronenborn, A.M.
Deposit date:2003-07-18
Release date:2003-10-14
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:A Protein Contortionist: Core Mutations of GB1 that Induce Dimerization and Domain Swapping
J.Mol.Biol., 333, 2003
3G2X
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BU of 3g2x by Molmil
Structure of mimivirus NDK +Kpn - N62L double mutant complexed with dTDP
Descriptor: MAGNESIUM ION, Nucleoside diphosphate kinase, THYMIDINE-5'-DIPHOSPHATE
Authors:Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C.
Deposit date:2009-02-01
Release date:2009-08-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
J.Virol., 83, 2009
3DTD
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BU of 3dtd by Molmil
Crystal structure of invasion associated protein b from bartonella henselae
Descriptor: GLYCEROL, Invasion-associated protein B
Authors:Patskovsky, Y, Ozyurt, S, Freeman, J, Slocombe, A, Groshong, C, Koss, J, Smith, D, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-07-14
Release date:2008-09-09
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal Structure of Invasion Associated Protein B from Bartonella Henselae.
To be Published
3GBW
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BU of 3gbw by Molmil
Crystal structure of the first PHR domain of the Mouse Myc-binding protein 2 (MYCBP-2)
Descriptor: E3 ubiquitin-protein ligase MYCBP2
Authors:Sampathkumar, P, Ozyurt, S.A, Wasserman, S.R, Klemke, R.L, Miller, S.A, Bain, K.T, Rutter, M.E, Tarun, G, Atwell, S, Sauder, J.M, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2009-02-20
Release date:2009-03-24
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Structures of PHR domains from Mus musculus Phr1 (Mycbp2) explain the loss-of-function mutation (Gly1092-->Glu) of the C. elegans ortholog RPM-1.
J.Mol.Biol., 397, 2010

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PDB entries from 2024-11-06

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