Sodium in active site of DNA Polymerase Beta

Summary for 2FMQ

Related2FMP 2FMS
Descriptor5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3', ... (8 entities in total)
Functional Keywordsnucleotidyl transferase, transferase-dna complex, transferase/dna
Biological sourceHomo sapiens (human)
Cellular locationNucleus P06746
Total number of polymer chains4
Total molecular weight48252.3
Batra, V.K.,Beard, W.A.,Shock, D.D.,Krahn, J.M.,Pedersen, L.C.,Wilson, S.H. (deposition date: 2006-01-09, release date: 2006-04-25, Last modification date: 2011-07-13)
Primary citation
Batra, V.K.,Beard, W.A.,Shock, D.D.,Krahn, J.M.,Pedersen, L.C.,Wilson, S.H.
Magnesium-induced assembly of a complete DNA polymerase catalytic complex.
Structure, 14:757-766, 2006
PubMed: 16615916 (PDB entries with the same primary citation)
DOI: 10.1016/j.str.2006.01.011
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.246501.4%0.6%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation reportDownload
PDB entries from 2020-09-16