Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 6628 results

5E0W
DownloadVisualize
BU of 5e0w by Molmil
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with the Cyclofenil Derivative 4,4'-{[(3S)-3-(4-hydroxyphenyl)cyclohexylidene]methanediyl}diphenol
Descriptor: 4,4'-{[(3S)-3-(4-hydroxyphenyl)cyclohexylidene]methanediyl}diphenol, Estrogen receptor, Nuclear receptor coactivator 2
Authors:Nwachukwu, J.C, Srinivasan, S, Zheng, Y, Wang, S, Min, J, Dong, C, Liao, Z, Cavett, V, Nowak, J, Houtman, R, Carlson, K.E, Josan, J.S, Elemento, O, Katzenellenbogen, J.A, Zhou, H.B, Nettles, K.W.
Deposit date:2015-09-29
Release date:2016-05-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Predictive features of ligand-specific signaling through the estrogen receptor.
Mol.Syst.Biol., 12, 2016
6DLA
DownloadVisualize
BU of 6dla by Molmil
Crystal structures of an influenza A hemagglutinin antibody Fab CH65:7969d2
Descriptor: CH65:7969d2 Fab heavy chain, CH65:7969d2 Fab light chain, SULFATE ION
Authors:Dong, J, Crowe, J.E, Finn, J.A.
Deposit date:2018-05-31
Release date:2019-06-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.004 Å)
Cite:Identification of Structurally Related Antibodies in Antibody Sequence Databases Using Rosetta-Derived Position-Specific Scoring.
Structure, 28, 2020
4WUT
DownloadVisualize
BU of 4wut by Molmil
CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM AGROBACTERIUM VITIS (Avi_5133, TARGET EFI-511220) WITH BOUND D-FUCOSE
Descriptor: ABC transporter substrate binding protein (Ribose), CALCIUM ION, CHLORIDE ION, ...
Authors:Vetting, M.W, Al Obaidi, N.F, Toro, R, Morisco, L.L, Benach, J, Wasserman, S.R, Attonito, J.D, Scott Glenn, A, Chamala, S, Chowdhury, S, Lafleur, J, Love, J, Seidel, R.D, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-11-03
Release date:2014-12-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM AGROBACTERIUM VITIS (Avi_5133, TARGET EFI-511220) WITH BOUND D-FUCOSE
To be published
4X09
DownloadVisualize
BU of 4x09 by Molmil
Structure of human RNase 6 in complex with sulphate anions
Descriptor: GLYCEROL, Ribonuclease K6, SULFATE ION
Authors:Prats-Ejarque, G, Arranz-Trullen, J, Blanco, J.A, Pulido, D, Moussaoui, M, Boix, E.
Deposit date:2014-11-21
Release date:2016-04-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.722 Å)
Cite:The first crystal structure of human RNase 6 reveals a novel substrate-binding and cleavage site arrangement.
Biochem.J., 473, 2016
5EBH
DownloadVisualize
BU of 5ebh by Molmil
Crystal Structure HEW Lysozyme processed with the CrystalDirect automated mounting and cryo-cooling technology
Descriptor: Lysozyme C
Authors:Zander, U, Hoffmann, G, Cornaciu, I, Marquez, J.A.
Deposit date:2015-10-19
Release date:2016-04-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Automated harvesting and processing of protein crystals through laser photoablation.
Acta Crystallogr D Struct Biol, 72, 2016
5EC6
DownloadVisualize
BU of 5ec6 by Molmil
The apo crystal structure of haemoglobin receptor HpuA from Kingella denitrificans
Descriptor: GLYCEROL, HpuA
Authors:Wong, C.T, Garnett, J.A, Hare, S.A.
Deposit date:2015-10-20
Release date:2015-11-04
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural analysis of haemoglobin binding by HpuA from the Neisseriaceae family.
Nat Commun, 6, 2015
249D
DownloadVisualize
BU of 249d by Molmil
STRUCTURAL COMPARISON BETWEEN THE D(CTAG) SEQUENCE IN OLIGONUCLEOTIDES AND TRP AND MET REPRESSOR-OPERATOR COMPLEXES
Descriptor: CALCIUM ION, DNA (5'-D(*CP*GP*CP*TP*CP*TP*AP*GP*AP*GP*CP*G)-3')
Authors:Urpi, L, Tereshko, V, Malinina, L, Huynh-Dinh, T, Subirana, J.A.
Deposit date:1996-02-22
Release date:1996-04-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural comparison between the d(CTAG) sequence in oligonucleotides and trp and met repressor-operator complexes.
Nat.Struct.Biol., 3, 1996
3BJ4
DownloadVisualize
BU of 3bj4 by Molmil
The KCNQ1 (Kv7.1) C-terminus, a multi-tiered scaffold for subunit assembly and protein interaction
Descriptor: NICKEL (II) ION, Potassium voltage-gated channel subfamily KQT member 1
Authors:Wiener, R, Hirsch, J.A.
Deposit date:2007-12-03
Release date:2008-01-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The KCNQ1 (Kv7.1) COOH terminus, a multitiered scaffold for subunit assembly and protein interaction.
J.Biol.Chem., 283, 2008
2A7Q
DownloadVisualize
BU of 2a7q by Molmil
Crystal structure of human dCK complexed with clofarabine and ADP
Descriptor: 2-CHLORO-9-(2-DEOXY-2-FLUORO-B -D-ARABINOFURANOSYL)-9H-PURIN-6-AMINE, ADENOSINE-5'-DIPHOSPHATE, Deoxycytidine kinase, ...
Authors:Zhang, Y, Secrist III, J.A, Ealick, S.E.
Deposit date:2005-07-05
Release date:2006-01-24
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:The structure of human deoxycytidine kinase in complex with clofarabine reveals key interactions for prodrug activation.
Acta Crystallogr.,Sect.D, 62, 2006
1YHI
DownloadVisualize
BU of 1yhi by Molmil
Uncyclized precursor structure of S65A Y66S R96A GFP variant
Descriptor: Green Fluorescent Protein
Authors:Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
Deposit date:2005-01-08
Release date:2005-02-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Understanding GFP Chromophore Biosynthesis: Controlling Backbone Cyclization and Modifying Post-translational Chemistry(,).
Biochemistry, 44, 2005
4WN9
DownloadVisualize
BU of 4wn9 by Molmil
Structure of the Nitrogenase MoFe Protein from Clostridium pasteurianum Pressurized with Xenon
Descriptor: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, FE (III) ION, FE(8)-S(7) CLUSTER, ...
Authors:Morrison, C.N, Hoy, J.A, Rees, D.C.
Deposit date:2014-10-11
Release date:2015-03-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Substrate Pathways in the Nitrogenase MoFe Protein by Experimental Identification of Small Molecule Binding Sites.
Biochemistry, 54, 2015
4WT7
DownloadVisualize
BU of 4wt7 by Molmil
Crystal structure of an ABC transporter solute binding protein (IPR025997) from Agrobacterium vitis (Avi_5165, Target EFI-511223) with bound allitol
Descriptor: ABC transporter substrate binding protein (Ribose), CHLORIDE ION, D-allitol
Authors:Vetting, M.W, Al Obaidi, N.F, Toro, R, Morisco, L.L, Benach, J, Wasserman, S.R, Attonito, J.D, Scott Glenn, A, Chamala, S, Chowdhury, S, Lafleur, J, Love, J, Seidel, R.D, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-10-29
Release date:2014-11-12
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of an ABC transporter solute binding protein (IPR025997) from Agrobacterium vitis (Avi_5165, Target EFI-511223) with bound allitol
To be published
1YJ2
DownloadVisualize
BU of 1yj2 by Molmil
Cyclized, non-dehydrated post-translational product for S65A Y66S H148G GFP variant
Descriptor: 1,2-ETHANEDIOL, Green Fluorescent Protein, MAGNESIUM ION
Authors:Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
Deposit date:2005-01-13
Release date:2005-02-15
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Understanding GFP Chromophore Biosynthesis: Controlling Backbone Cyclization and Modifying Post-translational Chemistry.
Biochemistry, 44, 2005
4WWQ
DownloadVisualize
BU of 4wwq by Molmil
Apo structure of the Grb7 SH2 domain
Descriptor: Growth factor receptor-bound protein 7, MALONIC ACID
Authors:Watson, G.M, Ambaye, N.D, Wilce, M.C, Wilce, J.A.
Deposit date:2014-11-12
Release date:2015-09-23
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Cyclic Peptides Incorporating Phosphotyrosine Mimetics as Potent and Specific Inhibitors of the Grb7 Breast Cancer Target.
J.Med.Chem., 58, 2015
6DAO
DownloadVisualize
BU of 6dao by Molmil
NahE WT selenomethionine
Descriptor: Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase
Authors:Medellin, B.P, LeVieux, J.A, Zhang, Y.J, Whitman, C.P.
Deposit date:2018-05-01
Release date:2019-05-08
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (1.939 Å)
Cite:Structural Characterization of the Hydratase-Aldolases, NahE and PhdJ: Implications for the Specificity, Catalysis, and N-Acetylneuraminate Lyase Subgroup of the Aldolase Superfamily.
Biochemistry, 57, 2018
1YJF
DownloadVisualize
BU of 1yjf by Molmil
Cyclized post-translational product for S65A Y66S (GFPhal) green fluorescent protein variant
Descriptor: Green Fluorescent Protein, MAGNESIUM ION
Authors:Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
Deposit date:2005-01-14
Release date:2005-02-15
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Understanding GFP Chromophore Biosynthesis: Controlling Backbone Cyclization and Modifying Post-translational Chemistry.
Biochemistry, 44, 2005
4X6S
DownloadVisualize
BU of 4x6s by Molmil
Grb7 SH2 domain with phosphotyrosine mimetic inhibitor peptide
Descriptor: Growth factor receptor-bound protein 7, Phosphotyrosine mimetic inhibitor peptide G7-TEM1
Authors:Watson, G.M, Panjikar, S, Wilce, M.C, Wilce, J.A.
Deposit date:2014-12-09
Release date:2015-09-23
Last modified:2015-10-28
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Cyclic Peptides Incorporating Phosphotyrosine Mimetics as Potent and Specific Inhibitors of the Grb7 Breast Cancer Target.
J.Med.Chem., 58, 2015
5EHD
DownloadVisualize
BU of 5ehd by Molmil
Crystal structure of human nucleophosmin-core in complex with cytochrome c
Descriptor: CHLORIDE ION, Nucleophosmin
Authors:Bernardo-Garcia, N, Hermoso, J.A, Gonzalez-Arzola, K, Diaz-Moreno, I, De la Rosa, M.A.
Deposit date:2015-10-28
Release date:2016-11-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structure of human nucleophosmin-core in complex with cytochrome c
To Be Published
6DS9
DownloadVisualize
BU of 6ds9 by Molmil
Elongated version of a de novo designed three helix bundle structure (GRa3D)
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, THIOCYANATE ION, ...
Authors:Koebke, K.J, Ruckthong, L.R, Meagher, J.L, Stuckey, J.A, Pecoraro, V.L.
Deposit date:2018-06-13
Release date:2018-10-03
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Clarifying the Copper Coordination Environment in a de Novo Designed Red Copper Protein.
Inorg Chem, 57, 2018
4WNA
DownloadVisualize
BU of 4wna by Molmil
Structure of the Nitrogenase MoFe Protein from Azotobacter vinelandii Pressurized with Xenon
Descriptor: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, FE (III) ION, FE(8)-S(7) CLUSTER, ...
Authors:Morrison, C.N, Hoy, J.A, Zhang, L, Einsle, O, Rees, D.C.
Deposit date:2014-10-11
Release date:2015-03-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Substrate Pathways in the Nitrogenase MoFe Protein by Experimental Identification of Small Molecule Binding Sites.
Biochemistry, 54, 2015
3C1P
DownloadVisualize
BU of 3c1p by Molmil
Crystal Structure of an alternating D-Alanyl, L-Homoalanyl PNA
Descriptor: Peptide Nucleic Acid DLY-HGL-AGD-LHC-AGD-LHC-CUD-LYS
Authors:Cuesta-Seijo, J.A, Sheldrick, G.M, Zhang, J, Diederichsen, U.
Deposit date:2008-01-23
Release date:2009-01-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1 Å)
Cite:Continuous beta-turn fold of an alternating alanyl/homoalanyl peptide nucleic acid.
Acta Crystallogr.,Sect.D, 68, 2012
4WS9
DownloadVisualize
BU of 4ws9 by Molmil
Crystal structure of sMAT N159G from Sulfolobus solfataricus
Descriptor: PHOSPHATE ION, S-adenosylmethionine synthase
Authors:Wang, F, Brady, E.L, Singh, S, Clinger, J.A, Huber, T.D, Thorson, J.S, Phillips Jr, G.N.
Deposit date:2014-10-26
Release date:2014-11-05
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.803 Å)
Cite:Crystal structure of sMAT N159G from Sulfolobus solfataricus.
To Be Published
4WZZ
DownloadVisualize
BU of 4wzz by Molmil
CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM CLOSTRIDIUM PHYTOFERMENTAS (Cphy_0583, TARGET EFI-511148) WITH BOUND L-RHAMNOSE
Descriptor: 1,2-ETHANEDIOL, Putative sugar ABC transporter, substrate-binding protein, ...
Authors:Vetting, M.W, Al Obaidi, N.F, Toro, R, Morisco, L.L, Benach, J, Wasserman, S.R, Attonito, J.D, Scott Glenn, A, Chamala, S, Chowdhury, S, Lafleur, J, Love, J, Seidel, R.D, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-11-20
Release date:2014-12-17
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM CLOSTRIDIUM PHYTOFERMENTAS (Cphy_0583, TARGET EFI-511148) WITH BOUND L-RHAMNOSE
To be published
6DXI
DownloadVisualize
BU of 6dxi by Molmil
Crystal structure of H-NOX protein from Nostoc sp V52W/L67W double-mutant.
Descriptor: H-NOX, PROTOPORPHYRIN IX CONTAINING FE
Authors:Weichsel, A, Kievenaar, J.A, Montfort, W.R.
Deposit date:2018-06-28
Release date:2018-07-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of H-NOX domain from cyanobacteria Nostoc sp
to be published
5EVG
DownloadVisualize
BU of 5evg by Molmil
Crystal structure of a Francisella virulence factor FvfA in the orthorhombic form
Descriptor: Francisella virulence factor
Authors:Kolappan, S, Lo, K.Y, Shen, C.L.J, Guttman, J.A, Craig, L.
Deposit date:2015-11-19
Release date:2016-10-26
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Structure of the conserved Francisella virulence protein FvfA.
Acta Crystallogr D Struct Biol, 73, 2017

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon