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PDB: 42880 results

7QCK
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BU of 7qck by Molmil
Structure of SARS-CoV-2 Papain-like Protease bound to N-(2,5-dihydroxybenzylidene)-thiosemicarbazone
Descriptor: CHLORIDE ION, GLYCEROL, N-(2,5-dihydroxybenzylidene)-thiosemicarbazone, ...
Authors:Ewert, W, Gunther, S, Reinke, P, Falke, S, Lieske, J, Miglioli, F, Carcelli, M, Srinivasan, V, Betzel, C, Han, H, Lorenzen, K, Guenther, C, Niebling, S, Garcia-Alai, M, Hinrichs, W, Rogolino, D, Meents, A.
Deposit date:2021-11-24
Release date:2022-03-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Hydrazones and Thiosemicarbazones Targeting Protein-Protein-Interactions of SARS-CoV-2 Papain-like Protease.
Front Chem, 10, 2022
1JEJ
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BU of 1jej by Molmil
T4 phage apo BGT
Descriptor: DNA BETA-GLUCOSYLTRANSFERASE
Authors:Morera, S, Lariviere, L, Kurzeck, J, Aschke-Sonnenborn, U, Freemont, P.S, Janin, J, Ruger, W.
Deposit date:2001-06-18
Release date:2001-08-15
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:High resolution crystal structures of T4 phage beta-glucosyltransferase: induced fit and effect of substrate and metal binding.
J.Mol.Biol., 311, 2001
8EB7
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BU of 8eb7 by Molmil
Cryo-EM structure of the in-situ gp4-gp10-gp9N from bacteriophage P22
Descriptor: Packaged DNA stabilization protein gp10, Peptidoglycan hydrolase gp4, Tail spike protein
Authors:Wang, C, Liu, J, Molineux, I.J.
Deposit date:2022-08-30
Release date:2023-09-06
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:In-situ structure of tail machine reveals mechanistic insights into P22 assembly
To Be Published
2PX9
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BU of 2px9 by Molmil
The intrinsic affinity between E2 and the Cys domain of E1 in Ubiquitin-like modifications
Descriptor: SUMO-activating enzyme subunit 2, SUMO-conjugating enzyme UBC9
Authors:Wang, J.H, Hu, W.D, Cai, S, Lee, B, Song, J, Chen, Y.
Deposit date:2007-05-14
Release date:2007-07-24
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The intrinsic affinity between E2 and the Cys domain of E1 in ubiquitin-like modifications.
Mol.Cell, 27, 2007
2Q1D
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BU of 2q1d by Molmil
2-keto-3-deoxy-D-arabinonate dehydratase complexed with magnesium and 2,5-dioxopentanoate
Descriptor: 2,5-DIOXOPENTANOIC ACID, 2-keto-3-deoxy-D-arabinonate dehydratase, MAGNESIUM ION
Authors:Barends, T, Brouns, S, Worm, P, Akerboom, J, Turnbull, A, Salmon, L.
Deposit date:2007-05-24
Release date:2008-04-08
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural insight into substrate binding and catalysis of a novel 2-keto-3-deoxy-D-arabinonate dehydratase illustrates common mechanistic features of the FAH superfamily.
J.Mol.Biol., 379, 2008
5I0A
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BU of 5i0a by Molmil
RecA mini intein in complex with cisplatin
Descriptor: 3,3',3''-phosphanetriyltripropanoic acid, Cisplatin, Intein, ...
Authors:Li, Z, Zhang, J, Li, H.M.
Deposit date:2016-02-03
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural insights into protein splicing inhibition by platinum therapeutics as potential anti-microbials
To be published
8VAN
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BU of 8van by Molmil
Structure of the E. coli clamp loader bound to the beta clamp in an Initial-Binding conformation
Descriptor: Beta sliding clamp, DNA polymerase III subunit delta, DNA polymerase III subunit delta', ...
Authors:Landeck, J.T, Pajak, J, Kelch, B.A.
Deposit date:2023-12-11
Release date:2024-03-27
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (7.7 Å)
Cite:Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication.
J.Biol.Chem., 300, 2024
8EAN
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BU of 8ean by Molmil
Cryo-EM structure of in-situ tailspike in bacteriophage P22
Descriptor: Tail spike protein
Authors:Wang, C, Liu, J, Molineux, I.J.
Deposit date:2022-08-29
Release date:2023-09-06
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:In-situ structure of tail machine reveals mechanistic insights into P22 assembly.
To Be Published
6MOQ
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BU of 6moq by Molmil
Crystal Structure of the All-trans Retinal-Bound R111K:Y134F:T54V:R132Q:P39Y:R59Y:L121W Mutant of Human Cellular Retinoic Acid Binding Protein II in the Dark at 2.2 Angstrom Resolution
Descriptor: Cellular retinoic acid-binding protein 2, RETINAL
Authors:Ghanbarpour, A, Geiger, J.
Deposit date:2018-10-04
Release date:2019-01-09
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.198 Å)
Cite:Mimicking Microbial Rhodopsin Isomerization in a Single Crystal.
J. Am. Chem. Soc., 141, 2019
8EAO
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BU of 8eao by Molmil
Cryo-EM structure of the in-situ gp1-gp4 complex from bacteriophage P22
Descriptor: Peptidoglycan hydrolase gp4, Portal protein
Authors:Wang, C, Liu, J, Molineux, I.J.
Deposit date:2022-08-29
Release date:2023-09-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:In-situ structure of tail machine reveals mechanistic insights into P22 assembly.
To Be Published
3TJ0
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BU of 3tj0 by Molmil
Crystal Structure of Influenza B Virus Nucleoprotein
Descriptor: Nucleoprotein
Authors:Ng, A.K.L, Zhang, H, Liu, J, Au, S.W.N, Wang, J, Shaw, P.C.
Deposit date:2011-08-23
Release date:2012-06-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.233 Å)
Cite:Structural basis for RNA binding and homo-oligomer formation by influenza B virus nucleoprotein
J.Virol., 86, 2012
3K35
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BU of 3k35 by Molmil
Crystal Structure of Human SIRT6
Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, NAD-dependent deacetylase sirtuin-6, SULFATE ION, ...
Authors:Pan, P.W, Dong, A, Qiu, W, Loppnau, P, Wang, J, Ravichandran, M, Bochkarev, A, Bountra, C, Weigelt, J, Arrowsmith, C.H, Min, J, Edwards, A.M, Structural Genomics Consortium (SGC)
Deposit date:2009-10-01
Release date:2009-12-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and biochemical functions of SIRT6.
J.Biol.Chem., 286, 2011
8EB3
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BU of 8eb3 by Molmil
Crystal structure of glutamate racemase from Helicobacter pylori in complex with a fragment
Descriptor: 1-[4-methyl-2-(pyridin-4-yl)-1,3-thiazol-5-yl]methanamine, CHLORIDE ION, D-GLUTAMIC ACID, ...
Authors:Cooling, G.T, Propp, J, Spies, M.A.
Deposit date:2022-08-30
Release date:2023-09-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of glutamate racemase from Helicobacter pylori in complex with a fragment
To Be Published
3K26
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BU of 3k26 by Molmil
Complex structure of EED and trimethylated H3K4
Descriptor: HISTONE PEPTIDE, Polycomb protein EED
Authors:Bian, C.B, Xu, C, Qiu, W, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2009-09-29
Release date:2009-12-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Binding of different histone marks differentially regulates the activity and specificity of polycomb repressive complex 2 (PRC2).
Proc.Natl.Acad.Sci.USA, 107, 2010
2PVW
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BU of 2pvw by Molmil
A high resolution structure of human glutamate carboxypeptidase II (GCPII) in complex with 2-(phosphonomethyl)pentanedioic acid (2-PMPA)
Descriptor: (2S)-2-(PHOSPHONOMETHYL)PENTANEDIOIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Barinka, C, Lubkowski, J.
Deposit date:2007-05-10
Release date:2007-05-22
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Structural insight into the pharmacophore pocket of human glutamate carboxypeptidase II.
J.Med.Chem., 50, 2007
8E4G
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BU of 8e4g by Molmil
Remodeling of the bacteriophage T7 during initial infection
Descriptor: Internal virion protein gp14, Internal virion protein gp15, Portal protein, ...
Authors:Wang, C, Liu, J, Molineux, I.J.
Deposit date:2022-08-18
Release date:2023-09-27
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Virion remodeling of bacteriophage T7 during infection initiation
To Be Published
8EAE
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BU of 8eae by Molmil
Structure of Ternary Complex of cGAS with dsDNA and Bound 5-pppG(2,5)pI
Descriptor: Cyclic GMP-AMP synthase, MAGNESIUM ION, Palindromic DNA18, ...
Authors:Wu, S, Sohn, J.
Deposit date:2022-08-29
Release date:2023-10-25
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:The structural basis for 2'-5'/3'-5'-cGAMP synthesis by cGAS.
Nat Commun, 15, 2024
5IG0
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BU of 5ig0 by Molmil
Crystal structure of S. rosetta CaMKII hub
Descriptor: CAMK/CAMK2 protein kinase, GLYCEROL, SULFATE ION
Authors:Bhattacharyya, M, Gee, C.L, Barros, T, Kuriyan, J.
Deposit date:2016-02-26
Release date:2016-03-23
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Molecular mechanism of activation-triggered subunit exchange in Ca(2+)/calmodulin-dependent protein kinase II.
Elife, 5, 2016
7QZ3
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BU of 7qz3 by Molmil
The structure of T. forsythia NanH
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, BNR/Asp-box repeat protein
Authors:Rafferty, J, Stafford, G, Satur, M.
Deposit date:2022-01-30
Release date:2022-12-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural and functional characterisation of a stable, broad-specificity multimeric sialidase from the oral pathogen Tannerella forsythia.
Biochem.J., 479, 2022
7R4S
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BU of 7r4s by Molmil
Crystal structure of PpSB1-LOV-I48T mutant (dark state)
Descriptor: FLAVIN MONONUCLEOTIDE, Sensory box protein
Authors:Granzin, J, Batra-Safferling, R.
Deposit date:2022-02-09
Release date:2022-12-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Residue alterations within a conserved hydrophobic pocket influence light, oxygen, voltage photoreceptor dark recovery.
Photochem Photobiol Sci, 22, 2023
7QYJ
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BU of 7qyj by Molmil
The structure of T. forsythia NanH
Descriptor: BNR/Asp-box repeat protein
Authors:Rafferty, J, Stafford, G, Satur, M.
Deposit date:2022-01-28
Release date:2022-12-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Structural and functional characterisation of a stable, broad-specificity multimeric sialidase from the oral pathogen Tannerella forsythia.
Biochem.J., 479, 2022
7R56
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BU of 7r56 by Molmil
Crystal structure of PpSB1-LOV-I48T mutant (light state)
Descriptor: FLAVIN MONONUCLEOTIDE, Sensory box protein
Authors:Granzin, J, Batra-Safferling, R.
Deposit date:2022-02-10
Release date:2022-12-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Residue alterations within a conserved hydrophobic pocket influence light, oxygen, voltage photoreceptor dark recovery.
Photochem Photobiol Sci, 22, 2023
1JQL
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BU of 1jql by Molmil
Mechanism of Processivity Clamp Opening by the Delta Subunit Wrench of the Clamp Loader Complex of E. coli DNA Polymerase III: Structure of beta-delta (1-140)
Descriptor: DNA Polymerase III, BETA CHAIN, DELTA SUBUNIT
Authors:Jeruzalmi, D, Yurieva, O, Zhao, Y, Young, M, Stewart, J, Hingorani, M, O'Donnell, M, Kuriyan, J.
Deposit date:2001-08-07
Release date:2001-09-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III.
Cell(Cambridge,Mass.), 106, 2001
7RAV
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BU of 7rav by Molmil
Cryo-EM structure of the unliganded form of NLR family apoptosis inhibitory protein 5 (NAIP5)
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Baculoviral IAP repeat-containing protein 1e
Authors:Paidimuddala, B, Cao, J, Xie, Q, Wu, H, Zhang, L.
Deposit date:2021-07-02
Release date:2023-01-11
Last modified:2023-03-01
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Mechanism of NAIP-NLRC4 inflammasome activation revealed by cryo-EM structure of unliganded NAIP5.
Nat.Struct.Mol.Biol., 30, 2023
7QYP
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BU of 7qyp by Molmil
The structure of T. forsythia NanH
Descriptor: 1,2-ETHANEDIOL, BNR/Asp-box repeat protein
Authors:Rafferty, J, Stafford, G, Satur, M.
Deposit date:2022-01-28
Release date:2022-12-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.659 Å)
Cite:Structural and functional characterisation of a stable, broad-specificity multimeric sialidase from the oral pathogen Tannerella forsythia.
Biochem.J., 479, 2022

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