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PDB: 1588 results

4M12
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BU of 4m12 by Molmil
Crystal structure of ITK in complex with compound 7 [4-(carbamoylamino)-1-(7-ethoxynaphthalen-1-yl)-1H-pyrazole-3-carboxamide]
Descriptor: 4-(carbamoylamino)-1-(7-ethoxynaphthalen-1-yl)-1H-pyrazole-3-carboxamide, Tyrosine-protein kinase ITK/TSK
Authors:Han, S, Caspers, N.L.
Deposit date:2013-08-02
Release date:2014-04-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Selectively targeting an inactive conformation of interleukin-2-inducible T-cell kinase by allosteric inhibitors.
Biochem.J., 460, 2014
4M0Z
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Crystal structure of ITK in complex with compound 5 {4-(carbamoylamino)-1-(7-methoxynaphthalen-1-yl)-1H-pyrazole-3-carboxamide}
Descriptor: 4-(carbamoylamino)-1-(7-methoxynaphthalen-1-yl)-1H-pyrazole-3-carboxamide, Tyrosine-protein kinase ITK/TSK
Authors:Han, S, Caspers, N.L.
Deposit date:2013-08-02
Release date:2014-04-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Selectively targeting an inactive conformation of interleukin-2-inducible T-cell kinase by allosteric inhibitors.
Biochem.J., 460, 2014
8Y2I
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BU of 8y2i by Molmil
Ternary structure of dLesCas12e-sgRNA-dsDNA
Descriptor: DNA (35-MER), dLesCas12e, sgRNA
Authors:Zhang, S, Lin, S, Liu, J.J.G.
Deposit date:2024-01-26
Release date:2024-10-23
Method:ELECTRON MICROSCOPY (2.92 Å)
Cite:Ternary structure of dVemCas12e-sgRNA-dsDNA
To Be Published
8XYC
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BU of 8xyc by Molmil
Ternary structure of dVemCas12e-sgRNA-dsDNA
Descriptor: DNA (35-MER), RNA (147-MER), dVemCas12e
Authors:Zhang, S, Lin, S, Liu, J.J.G.
Deposit date:2024-01-19
Release date:2024-10-23
Method:ELECTRON MICROSCOPY (2.51 Å)
Cite:Ternary structure of dVemCas12e-sgRNA-dsDNA
To Be Published
5UIS
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BU of 5uis by Molmil
Crystal structure of IRAK4 in complex with compound 12
Descriptor: 4-{[(3R)-piperidin-3-yl]oxy}-6-[(propan-2-yl)oxy]quinoline-7-carboxamide, Interleukin-1 receptor-associated kinase 4
Authors:Han, S, Chang, J.S.
Deposit date:2017-01-14
Release date:2017-05-24
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Discovery of Clinical Candidate 1-{[(2S,3S,4S)-3-Ethyl-4-fluoro-5-oxopyrrolidin-2-yl]methoxy}-7-methoxyisoquinoline-6-carboxamide (PF-06650833), a Potent, Selective Inhibitor of Interleukin-1 Receptor Associated Kinase 4 (IRAK4), by Fragment-Based Drug Design.
J. Med. Chem., 60, 2017
5UIQ
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Crystal structure of IRAK4 in complex with compound 9
Descriptor: 2-[(propan-2-yl)oxy]benzamide, Interleukin-1 receptor-associated kinase 4
Authors:Han, S, Chang, J.S.
Deposit date:2017-01-14
Release date:2017-05-24
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Discovery of Clinical Candidate 1-{[(2S,3S,4S)-3-Ethyl-4-fluoro-5-oxopyrrolidin-2-yl]methoxy}-7-methoxyisoquinoline-6-carboxamide (PF-06650833), a Potent, Selective Inhibitor of Interleukin-1 Receptor Associated Kinase 4 (IRAK4), by Fragment-Based Drug Design.
J. Med. Chem., 60, 2017
5UIR
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BU of 5uir by Molmil
Crystal structure of IRAK4 in complex with compound 11
Descriptor: 5-(4-cyanophenyl)-3-[(propan-2-yl)oxy]naphthalene-2-carboxamide, Interleukin-1 receptor-associated kinase 4
Authors:Han, S, Chang, J.S.
Deposit date:2017-01-14
Release date:2017-05-24
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Discovery of Clinical Candidate 1-{[(2S,3S,4S)-3-Ethyl-4-fluoro-5-oxopyrrolidin-2-yl]methoxy}-7-methoxyisoquinoline-6-carboxamide (PF-06650833), a Potent, Selective Inhibitor of Interleukin-1 Receptor Associated Kinase 4 (IRAK4), by Fragment-Based Drug Design.
J. Med. Chem., 60, 2017
5UIT
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BU of 5uit by Molmil
Crystal structure of IRAK4 in complex with compound 14
Descriptor: 1-{[(2S)-5-oxopyrrolidin-2-yl]methoxy}-7-[(propan-2-yl)oxy]isoquinoline-6-carboxamide, Interleukin-1 receptor-associated kinase 4
Authors:Han, S, Chang, J.S.
Deposit date:2017-01-14
Release date:2017-05-24
Last modified:2017-07-26
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Discovery of Clinical Candidate 1-{[(2S,3S,4S)-3-Ethyl-4-fluoro-5-oxopyrrolidin-2-yl]methoxy}-7-methoxyisoquinoline-6-carboxamide (PF-06650833), a Potent, Selective Inhibitor of Interleukin-1 Receptor Associated Kinase 4 (IRAK4), by Fragment-Based Drug Design.
J. Med. Chem., 60, 2017
5UIU
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BU of 5uiu by Molmil
Crystal structure of IRAK4 in complex with compound 30
Descriptor: 1-{[(2S,3S,4S)-3-ethyl-4-fluoro-5-oxopyrrolidin-2-yl]methoxy}-7-methoxyisoquinoline-6-carboxamide, Interleukin-1 receptor-associated kinase 4
Authors:Han, S, Chang, J.S.
Deposit date:2017-01-14
Release date:2017-05-24
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Discovery of Clinical Candidate 1-{[(2S,3S,4S)-3-Ethyl-4-fluoro-5-oxopyrrolidin-2-yl]methoxy}-7-methoxyisoquinoline-6-carboxamide (PF-06650833), a Potent, Selective Inhibitor of Interleukin-1 Receptor Associated Kinase 4 (IRAK4), by Fragment-Based Drug Design.
J. Med. Chem., 60, 2017
7XQP
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BU of 7xqp by Molmil
PSI-LHCI-LHCII-Lhcb9 supercomplex of Physcomitrella patens
Descriptor: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ...
Authors:Zhang, S, Tang, K.L, Li, X.Y, Wang, W.D, Yan, Q.J, Shen, L.L, Kuang, T.Y, Han, G.Y, Shen, J.R, Zhang, X.
Deposit date:2022-05-08
Release date:2023-04-26
Last modified:2023-06-07
Method:ELECTRON MICROSCOPY (2.68 Å)
Cite:Structural insights into a unique PSI-LHCI-LHCII-Lhcb9 supercomplex from moss Physcomitrium patens.
Nat.Plants, 9, 2023
1HNA
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BU of 1hna by Molmil
CRYSTAL STRUCTURE OF HUMAN CLASS MU GLUTATHIONE TRANSFERASE GSTM2-2: EFFECTS OF LATTICE PACKING ON CONFORMATIONAL HETEROGENEITY
Descriptor: GLUTATHIONE S-(2,4 DINITROBENZENE), GLUTATHIONE S-TRANSFERASE
Authors:Raghunathan, S, Chandross, R.J, Kretsinger, R.H, Allison, T.J, Penington, C.J, Rule, G.S.
Deposit date:1993-10-15
Release date:1994-01-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of human class mu glutathione transferase GSTM2-2. Effects of lattice packing on conformational heterogeneity.
J.Mol.Biol., 238, 1994
1QWV
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BU of 1qwv by Molmil
Solution structure of Antheraea polyphemus pheromone binding protein (ApolPBP)
Descriptor: Pheromone-binding protein
Authors:Mohanty, S, Zubkov, S, Gronenborn, A.M.
Deposit date:2003-09-03
Release date:2004-03-23
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:The Solution NMR Structure of Antheraea polyphemus PBP Provides New Insight into Pheromone Recognition by Pheromone-binding Proteins
J.Mol.Biol., 337, 2004
8E9W
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BU of 8e9w by Molmil
CryoEM structure of miniGq-coupled hM3Dq in complex with DCZ
Descriptor: 11-(4-methylpiperazin-1-yl)-5H-dibenzo[b,e][1,4]diazepine, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Zhang, S, Fay, J.F, Roth, B.L.
Deposit date:2022-08-27
Release date:2022-11-30
Last modified:2022-12-21
Method:ELECTRON MICROSCOPY (2.69 Å)
Cite:Molecular basis for selective activation of DREADD-based chemogenetics.
Nature, 612, 2022
8E9X
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BU of 8e9x by Molmil
CryoEM structure of miniGo-coupled hM4Di in complex with DCZ
Descriptor: 11-(4-methylpiperazin-1-yl)-5H-dibenzo[b,e][1,4]diazepine, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Zhang, S, Fay, J.F, Roth, B.L.
Deposit date:2022-08-27
Release date:2022-11-30
Last modified:2022-12-21
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Molecular basis for selective activation of DREADD-based chemogenetics.
Nature, 612, 2022
8E9Y
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BU of 8e9y by Molmil
CryoEM structure of miniGq-coupled hM3Dq in complex with CNO
Descriptor: 8-chloro-11-(4-methyl-4-oxo-4lambda~5~-piperazin-1-yl)-5H-dibenzo[b,e][1,4]diazepine, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Zhang, S, Fay, J.F, Roth, B.L.
Deposit date:2022-08-27
Release date:2022-11-30
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.79 Å)
Cite:Molecular basis for selective activation of DREADD-based chemogenetics.
Nature, 612, 2022
8E9Z
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BU of 8e9z by Molmil
CryoEM structure of miniGq-coupled hM3R in complex with Iperoxo
Descriptor: 4-(4,5-dihydro-1,2-oxazol-3-yloxy)-N,N,N-trimethylbut-2-yn-1-aminium, CHOLESTEROL HEMISUCCINATE, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Zhang, S, Fay, J.F, Roth, B.L.
Deposit date:2022-08-27
Release date:2022-11-30
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.69 Å)
Cite:Molecular basis for selective activation of DREADD-based chemogenetics.
Nature, 612, 2022
8EA0
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BU of 8ea0 by Molmil
CryoEM structure of miniGq-coupled hM3R in complex with iperoxo (local refinement)
Descriptor: 4-(4,5-dihydro-1,2-oxazol-3-yloxy)-N,N,N-trimethylbut-2-yn-1-aminium, CHOLESTEROL HEMISUCCINATE, Muscarinic acetylcholine receptor M3
Authors:Zhang, S, Fay, J.F, Roth, B.L.
Deposit date:2022-08-27
Release date:2022-11-30
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.56 Å)
Cite:Molecular basis for selective activation of DREADD-based chemogenetics.
Nature, 612, 2022
8IYQ
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BU of 8iyq by Molmil
Structure of CbCas9 bound to 20-nucleotide complementary DNA substrate
Descriptor: NTS, TS, deadCbCas9, ...
Authors:Zhang, S, Lin, S, Liu, J.J.G.
Deposit date:2023-04-05
Release date:2024-06-05
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (2.46 Å)
Cite:Pro-CRISPR PcrIIC1-associated Cas9 system for enhanced bacterial immunity.
Nature, 630, 2024
7QSQ
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BU of 7qsq by Molmil
Permutated N-terminal lobe of the ribose binding protein from Thermotoga maritima
Descriptor: 1,2-ETHANEDIOL, Ribose ABC transporter, periplasmic ribose-binding protein, ...
Authors:Shanmugaratnam, S, Michel, F, Hocker, B.
Deposit date:2022-01-14
Release date:2023-01-11
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Structures of permuted halves of a modern ribose-binding protein.
Acta Crystallogr D Struct Biol, 79, 2023
7QSP
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BU of 7qsp by Molmil
Permutated C-terminal lobe of the ribose binding protein from Thermotoga maritima
Descriptor: 1,2-ETHANEDIOL, Ribose ABC transporter, periplasmic ribose-binding protein
Authors:Shanmugaratnam, S, Michel, F, Hocker, B.
Deposit date:2022-01-14
Release date:2023-01-11
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Structures of permuted halves of a modern ribose-binding protein.
Acta Crystallogr D Struct Biol, 79, 2023
6MNY
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BU of 6mny by Molmil
Crystal structure of mouse BTK kinase domain in complex with compound 9a
Descriptor: 5-amino-1-[(3R)-1-cyanopiperidin-3-yl]-3-[4-(2,4-difluorophenoxy)phenyl]-1H-pyrazole-4-carboxamide, Tyrosine-protein kinase
Authors:Han, S, Caspers, N, Ohren, J.O.
Deposit date:2018-10-03
Release date:2019-01-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Aminopyrazole Carboxamide Bruton's Tyrosine Kinase Inhibitors. Irreversible to Reversible Covalent Reactive Group Tuning.
ACS Med Chem Lett, 10, 2019
1QF4
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BU of 1qf4 by Molmil
DESIGN, SYNTHESIS, AND X-RAY CRYSTAL STRUCTURE OF AN ENZYME BOUND BISUBSTRATE HYBRID INHIBITOR OF ADENYLOSUCCINATE SYNTHETASE
Descriptor: (C8-R)-HYDANTOCIDIN 5'-PHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Hanessian, S, Lu, P.-P, Sanceau, J.-Y, Chemla, P, Gohda, K, Fonne-Pfister, R, Prade, L, Cowan-Jacob, S.W.
Deposit date:1999-04-06
Release date:1999-12-02
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:An enzyme-bound bisubstrate hybrid inhibitor of adenylosuccinate synthetase
Angew.Chem.Int.Ed.Engl., 38, 1999
1QF5
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BU of 1qf5 by Molmil
DESIGN, SYNTHESIS, AND X-RAY CRYSTAL STRUCTURE OF AN ENZYME BOUND BISUBSTRATE HYBRID INHIBITOR OF ADENYLOSUCCINATE SYNTHETASE
Descriptor: (C8-S)-HYDANTOCIDIN 5'-PHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Hanessian, S, Lu, P.-P, Sanceau, J.-Y, Chemla, P, Prade, L, Gohda, K, Cowan-Jacob, S.W, Fonne-Pfister, R.
Deposit date:1999-04-06
Release date:1999-12-02
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:An enzyme-bound bisubstrate hybrid inhibitor of adenylosuccinate synthetase
Angew.Chem.Int.Ed.Engl., 38, 1999
8J2Y
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BU of 8j2y by Molmil
Acidimicrobiaceae bacterium photocobilins protein, dark state
Descriptor: 5'-DEOXYADENOSINE, COBALAMIN, DI(HYDROXYETHYL)ETHER, ...
Authors:Zhang, S, Poddar, H, Levy, W.C, Leys, D.
Deposit date:2023-04-15
Release date:2024-04-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Photocobilins integrate B12 and bilin photochemistry for enzyme control.
Nat Commun, 15, 2024
8J2X
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BU of 8j2x by Molmil
Saccharothrix syringae photocobilins protein, light state
Descriptor: BILIVERDINE IX ALPHA, COBALAMIN, Cobalamin-binding protein, ...
Authors:Zhang, S, Poddar, H, Levy, C, Leys, D.
Deposit date:2023-04-15
Release date:2024-04-10
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Photocobilins integrate B12 and bilin photochemistry for enzyme control.
Nat Commun, 15, 2024

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