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PDB: 1718 results

4V8H
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Crystal structure of HPF bound to the 70S ribosome.
Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S Ribosomal Protein S10, ...
Authors:Polikanov, Y.S, Blaha, G.M, Steitz, T.A.
Deposit date:2011-12-11
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:How Hibernation Factors RMF, HPF, and YfiA Turn Off Protein Synthesis.
Science, 336, 2012
5D0J
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BU of 5d0j by Molmil
Grb7 SH2 with inhibitor peptide
Descriptor: G7-TEdFP peptide, Growth factor receptor-bound protein 7, PHOSPHATE ION
Authors:Gunzburg, M.J, Watson, G.M, Wilce, J.A, Wilce, M.C.J.
Deposit date:2015-08-03
Release date:2016-06-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Unexpected involvement of staple leads to redesign of selective bicyclic peptide inhibitor of Grb7.
Sci Rep, 6, 2016
5DPJ
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BU of 5dpj by Molmil
sfGFP double mutant - 133/149 p-ethynyl-L-phenylalanine
Descriptor: Green fluorescent protein
Authors:Dippel, A.B, Olenginski, G.M, Maurici, N, Liskov, M.T, Brewer, S.H, Phillips-Piro, C.M.
Deposit date:2015-09-12
Release date:2016-02-03
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Probing the effectiveness of spectroscopic reporter unnatural amino acids: a structural study.
Acta Crystallogr D Struct Biol, 72, 2016
1VTR
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BU of 1vtr by Molmil
STRUCTURE OF THE DEOXYTETRANUCLEOTIDE D-PAPTPAPT AND A SEQUENCE-DEPENDENT MODEL FOR POLY(DA-DT)
Descriptor: DNA (5'-D(*AP*TP*AP*T)-3')
Authors:Viswamitra, M.A, Shakked, Z, Jones, P.G, Sheldrick, G.M, Salisbury, S.A, Kennard, O.
Deposit date:1988-08-18
Release date:2011-07-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.04 Å)
Cite:Structure of the Deoxytetranucleotide d-pApTpApT and a Sequence-Dependent Model for Poly(dA-dT)
Biopolymers, 21, 1982
4YGK
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BU of 4ygk by Molmil
NaSCN--Interactions between Hofmeister Anions and the Binding Pocket of a Protein
Descriptor: Carbonic anhydrase 2, HYDROXIDE ION, THIOCYANATE ION, ...
Authors:Fox, J.M, Kang, K, Sherman, W, Heroux, A, Sastry, G.M, Baghbanzadeh, M, Lockett, M.R, Whitesides, G.M.
Deposit date:2015-02-26
Release date:2015-03-25
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Interactions between Hofmeister Anions and the Binding Pocket of a Protein.
J.Am.Chem.Soc., 137, 2015
4YGJ
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NaBr--Interactions between Hofmeister Anions and the Binding Pocket of a Protein
Descriptor: BROMIDE ION, Carbonic anhydrase 2, ZINC ION
Authors:Fox, J.M, Kang, K, Sherman, W, Heroux, A, Sastry, G.M, Baghbanzadeh, M, Lockett, M.R, Whitesides, G.M.
Deposit date:2015-02-26
Release date:2015-03-25
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Interactions between Hofmeister Anions and the Binding Pocket of a Protein.
J.Am.Chem.Soc., 137, 2015
4YGN
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NaI--Interactions between Hofmeister Anions and the Binding Pocket of a Protein
Descriptor: Carbonic anhydrase 2, IODIDE ION, ZINC ION
Authors:Fox, J.M, Kang, K, Sherman, W, Heroux, A, Sastry, G.M, Baghbanzadeh, M, Lockett, M.R, Whitesides, G.M.
Deposit date:2015-02-26
Release date:2015-03-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:Interactions between Hofmeister Anions and the Binding Pocket of a Protein.
J.Am.Chem.Soc., 137, 2015
4YGL
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BU of 4ygl by Molmil
NaClO4--Interactions between Hofmeister Anions and the Binding Pocket of a Protein
Descriptor: Carbonic anhydrase 2, HYDROXIDE ION, PERCHLORATE ION, ...
Authors:Fox, J.M, Kang, K, Sherman, W, Heroux, A, Sastry, G.M, Baghbanzadeh, M, Lockett, M.R, Whitesides, G.M.
Deposit date:2015-02-26
Release date:2015-03-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Interactions between Hofmeister Anions and the Binding Pocket of a Protein.
J.Am.Chem.Soc., 137, 2015
6Q45
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BU of 6q45 by Molmil
F1-ATPase from Fusobacterium nucleatum
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ...
Authors:Petri, J, Nakatani, Y, Montgomery, M.G, Ferguson, S.A, Aragao, D, Leslie, A.G.W, Heikal, A, Walker, J.E, Cook, G.M.
Deposit date:2018-12-05
Release date:2019-07-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structure of F1-ATPase from the obligate anaerobe Fusobacterium nucleatum.
Open Biology, 9, 2019
4FEE
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BU of 4fee by Molmil
High-resolution structure of pyruvate oxidase in complex with reaction intermediate 2-hydroxyethyl-thiamin diphosphate carbanion-enamine, crystal B
Descriptor: 2-[(2E)-3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-2-(1-HYDROXYETHYLIDENE)-4-METHYL-2,3-DIHYDRO-1,3-THIAZOL-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Meyer, D, Neumann, P, Koers, E, Sjuts, H, Luedtke, S, Sheldrick, G.M, Ficner, R, Tittmann, K.
Deposit date:2012-05-30
Release date:2012-06-20
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:Unexpected tautomeric equilibria of the carbanion-enamine intermediate in pyruvate oxidase highlight unrecognized chemical versatility of thiamin.
Proc.Natl.Acad.Sci.USA, 109, 2012
4FEG
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BU of 4feg by Molmil
High-resolution structure of pyruvate oxidase in complex with reaction intermediate 2-hydroxyethyl-thiamin diphosphate carbanion-enamine, crystal A
Descriptor: 2-[(2E)-3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-2-(1-HYDROXYETHYLIDENE)-4-METHYL-2,3-DIHYDRO-1,3-THIAZOL-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Meyer, D, Neumann, P, Koers, E, Sjuts, H, Luedtke, S, Sheldrick, G.M, Ficner, R, Tittmann, K.
Deposit date:2012-05-30
Release date:2012-06-20
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.09 Å)
Cite:Unexpected tautomeric equilibria of the carbanion-enamine intermediate in pyruvate oxidase highlight unrecognized chemical versatility of thiamin.
Proc.Natl.Acad.Sci.USA, 109, 2012
4FKD
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BU of 4fkd by Molmil
Identification of the Activator Binding Residues in the Second Cysteine-Rich Regulatory Domain of Protein Kinase C Theta
Descriptor: Protein kinase C theta type, ZINC ION
Authors:Rahman, G.M, Shanker, S, Lewin, N.E, Prasad, B.V.V, Blumberg, P.M, Das, J.
Deposit date:2012-06-13
Release date:2013-01-23
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.633 Å)
Cite:Identification of the Activator Binding Residues in the Second Cysteine-Rich Regulatory Domain of Protein Kinase C Theta.
Biochem.J., 451, 2013
6I1B
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BU of 6i1b by Molmil
HIGH-RESOLUTION THREE-DIMENSIONAL STRUCTURE OF INTERLEUKIN-1 BETA IN SOLUTION BY THREE-AND FOUR-DIMENSIONAL NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY
Descriptor: INTERLEUKIN-1 BETA
Authors:Clore, G.M, Gronenborn, A.M.
Deposit date:1991-01-22
Release date:1992-10-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:High-resolution three-dimensional structure of interleukin 1 beta in solution by three- and four-dimensional nuclear magnetic resonance spectroscopy.
Biochemistry, 30, 1991
3TRX
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BU of 3trx by Molmil
HIGH-RESOLUTION THREE-DIMENSIONAL STRUCTURE OF REDUCED RECOMBINANT HUMAN THIOREDOXIN IN SOLUTION
Descriptor: THIOREDOXIN
Authors:Forman-Kay, J.D, Clore, G.M, Gronenborn, A.M.
Deposit date:1990-12-17
Release date:1992-01-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:High-resolution three-dimensional structure of reduced recombinant human thioredoxin in solution.
Biochemistry, 30, 1991
5KMQ
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BU of 5kmq by Molmil
The structure of I379E variant of type II NADH dehydrogenase from Caldalkalibacillus thermarum
Descriptor: FAD-dependent pyridine nucleotide-disulfide oxidoreductase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Cook, G.M, Aragao, D, Nakatani, Y.
Deposit date:2016-06-27
Release date:2017-01-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The mechanism of catalysis by type-II NADH:quinone oxidoreductases.
Sci Rep, 7, 2017
5L03
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BU of 5l03 by Molmil
Crystal structure of 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE Synthase from BURKHOLDERIA PSEUDOMALLEI bound to L-tryptophan hydroxamate
Descriptor: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, N-hydroxy-L-tryptophanamide, ZINC ION
Authors:Blain, J.M, Ghose, D, Gorman, J.L, Goshu, G.M, Ranieri, G, Zhao, L, Bode, B, Meganathan, R, Walter, R.L, Hagen, T.J, Horn, J.R.
Deposit date:2016-07-26
Release date:2017-11-08
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.469 Å)
Cite:Synthesis and Characterization of the Burkholderia pseudomallei IspF Inhibitor L-tryptophan hydroxamate
To Be Published
1VSQ
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BU of 1vsq by Molmil
Solution NMR structure of the productive complex between IIAMannose and IIBMannose of the mannose transporter of the E. coli phosphotransferase system
Descriptor: Mannose-specific phosphotransferase enzyme IIA component, Mannose-specific phosphotransferase enzyme IIB component
Authors:Clore, G.M, Hu, J, Hu, K.
Deposit date:2008-01-10
Release date:2008-02-19
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution NMR Structures of Productive and Non-productive Complexes between the A and B Domains of the Cytoplasmic Subunit of the Mannose Transporter of the Escherichia coli Phosphotransferase System.
J.Biol.Chem., 283, 2008
1W3M
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BU of 1w3m by Molmil
Crystal structure of tsushimycin
Descriptor: CALCIUM ION, CHLORIDE ION, Delta-3isotetradecenoic acid, ...
Authors:Bunkoczi, G, Vertesy, L, Sheldrick, G.M.
Deposit date:2004-07-16
Release date:2005-07-27
Last modified:2019-05-22
Method:X-RAY DIFFRACTION (1 Å)
Cite:Structure of the lipopeptide antibiotic tsushimycin.
Acta Crystallogr. D Biol. Crystallogr., 61, 2005
4UQ3
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BU of 4uq3 by Molmil
Crystal structure of HLA-A0201 in complex with an azobenzene- containing peptide
Descriptor: AZOBENZENE-CONTAINING PEPTIDE, BETA-2-MICROGLOBULIN, HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, ...
Authors:Thong, S.Y, Yap, J.W, Lim, P.Y, Verhelst, S.H, Lescar, J, Meijers, R, Grotenbreg, G.M.
Deposit date:2014-06-19
Release date:2014-09-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Bioorthogonal cleavage and exchange of major histocompatibility complex ligands by employing azobenzene-containing peptides.
Angew. Chem. Int. Ed. Engl., 53, 2014
4UQ2
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BU of 4uq2 by Molmil
Crystal structure of HLA-A1101 in complex with an azobenzene- containing peptide
Descriptor: AZOBENZENE-CONTAINING PEPTIDE, BETA-2-MICROGLOBULIN, HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, ...
Authors:Thong, S.Y, Yap, J.W, Lim, P.Y, Verhelst, S.H, Lescar, J, Meijers, R, Grotenbreg, G.M.
Deposit date:2014-06-19
Release date:2014-09-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Bioorthogonal Cleavage and Exchange of Major Histocompatibility Complex Ligands by Employing Azobenzene-Containing Peptides.
Angew.Chem.Int.Ed.Engl., 53, 2014
4V8G
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BU of 4v8g by Molmil
Crystal structure of RMF bound to the 70S ribosome.
Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S Ribosomal Protein S10, ...
Authors:Polikanov, Y.S, Blaha, G.M, Steitz, T.A.
Deposit date:2011-12-11
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (3 Å)
Cite:How hibernation factors RMF, HPF, and YfiA turn off protein synthesis.
Science, 336, 2012
4V8I
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BU of 4v8i by Molmil
Crystal structure of YfiA bound to the 70S ribosome.
Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S Ribosomal Protein S10, ...
Authors:Polikanov, Y.S, Blaha, G.M, Steitz, T.A.
Deposit date:2011-12-12
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:How hibernation factors RMF, HPF, and YfiA turn off protein synthesis.
Science, 336, 2012
2FQ8
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BU of 2fq8 by Molmil
NMR structure of 2F associated with lipid disc
Descriptor: 2F
Authors:Mishra, V.K, Anantharamaiah, G.M, Krishna, N.R.
Deposit date:2006-01-17
Release date:2006-01-24
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Association of a Model Class A (Apolipoprotein) Amphipathic {alpha} Helical Peptide with Lipid: high resolution NMR studies of peptide-lipid discoidal complexes
J.Biol.Chem., 281, 2006
2FQ5
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BU of 2fq5 by Molmil
NMR structure of 2F associated with lipid disc
Descriptor: Peptide 2F
Authors:Mishra, V.K, Anantharamaiah, G.M, Krishna, N.R.
Deposit date:2006-01-17
Release date:2006-01-24
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Association of a Model Class A (Apolipoprotein) Amphipathic {alpha} Helical Peptide with Lipid: High resolution NMR studies of peptide-lipid discoidal complexes
J.Biol.Chem., 281, 2006
2Y8N
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BU of 2y8n by Molmil
Crystal structure of glycyl radical enzyme
Descriptor: 4-HYDROXYPHENYLACETATE DECARBOXYLASE LARGE SUBUNIT, 4-HYDROXYPHENYLACETATE DECARBOXYLASE SMALL SUBUNIT, IRON/SULFUR CLUSTER
Authors:Martins, B.M, Blaser, M, Feliks, M, Ullmann, G.M, Selmer, T.
Deposit date:2011-02-08
Release date:2011-09-21
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural Basis for a Kolbe-Type Decarboxylation Catalyzed by a Glycyl Radical Enzyme.
J.Am.Chem.Soc., 133, 2011

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