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PDB: 40736 results

7OTN
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HIV-1 REVERSE TRANSCRIPTASE COMPLEX WITH DNA AND INHIBITOR RMC-247
Descriptor: (S)-2-((2-(6-amino-9H-purin-9-yl)ethyl)amino)-3-phosphonopropanoic acid, DNA (5'-D(*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(DDG))-3'), DNA (5'-D(P*GP*GP*TP*CP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*G)-3'), ...
Authors:Martinez, S.E, Singh, A.K, Gu, W, Das, K.
Deposit date:2021-06-10
Release date:2021-12-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Exploring the dNTP -binding site of HIV-1 reverse transcriptase for inhibitor design.
Eur.J.Med.Chem., 225, 2021
9PCY
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HIGH-RESOLUTION SOLUTION STRUCTURE OF REDUCED FRENCH BEAN PLASTOCYANIN AND COMPARISON WITH THE CRYSTAL STRUCTURE OF POPLAR PLASTOCYANIN
Descriptor: COPPER (II) ION, PLASTOCYANIN
Authors:Moore, J.M, Lepre, C.A, Gippert, G.P, Chazin, W.J, Case, D.A, Wright, P.E.
Deposit date:1991-03-18
Release date:1993-10-31
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:High-resolution solution structure of reduced French bean plastocyanin and comparison with the crystal structure of poplar plastocyanin.
J.Mol.Biol., 221, 1991
9F3E
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BU of 9f3e by Molmil
Single acyclic phosphonate nucleotide (R)-ZNA modification on DNA duplex
Descriptor: C modified (R)-ZNA
Authors:Li, X, Groaz, E, Herdewyn, P, Lescrinier, E.
Deposit date:2024-04-25
Release date:2024-06-05
Last modified:2024-07-10
Method:SOLUTION NMR
Cite:Impact of Single Acyclic Phosphonate Nucleotide (ZNA) Modifications on DNA Duplex Stability.
Chemistry, 30, 2024
7OTZ
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BU of 7otz by Molmil
HIV-1 REVERSE TRANSCRIPTASE COMPLEX WITH DNA AND INHIBITOR RMC-259
Descriptor: (S)-2-(2-(6-amino-9H-purin-9-yl)ethoxy)-3-phosphonopropanoic acid, DNA (5'-D(*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(DDG))-3'), DNA (5'-D(P*GP*GP*TP*CP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*G)-3'), ...
Authors:Martinez, S.E, Singh, A.K, Gu, W, Das, K.
Deposit date:2021-06-10
Release date:2021-12-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Exploring the dNTP -binding site of HIV-1 reverse transcriptase for inhibitor design.
Eur.J.Med.Chem., 225, 2021
4S3F
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BU of 4s3f by Molmil
IspG in complex with Inhibitor 8 (compound 1077)
Descriptor: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, FE3-S4 CLUSTER, but-3-yn-1-yl trihydrogen diphosphate
Authors:Quitterer, F, Frank, A, Wang, K, Rao, G, O'Dowd, B, Li, J, Guerra, F, Abdel-Azeim, S, Bacher, A, Eppinger, J, Oldfield, E, Groll, M.
Deposit date:2015-01-26
Release date:2015-04-29
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Atomic-Resolution Structures of Discrete Stages on the Reaction Coordinate of the [Fe4S4] Enzyme IspG (GcpE).
J.Mol.Biol., 427, 2015
8Y8Z
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BU of 8y8z by Molmil
Structure of NET-Maprotiline in outward-open state
Descriptor: CHLORIDE ION, SODIUM ION, Sodium-dependent noradrenaline transporter, ...
Authors:Zhang, H, Xu, E.H, Jiang, Y.
Deposit date:2024-02-06
Release date:2024-05-29
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.29 Å)
Cite:Dimerization and antidepressant recognition at noradrenaline transporter.
Nature, 630, 2024
8V3P
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BU of 8v3p by Molmil
CCP5 in complex with Glu-P-peptide 2 transition state analog
Descriptor: Cytosolic carboxypeptidase-like protein 5, Tubulin beta-2A chain, ZINC ION
Authors:Chen, J, Zehr, E.A, Gruschus, J.M, Szyk, A, Liu, Y, Tanner, M.E, Tjandra, N, Roll-Mecak, A.
Deposit date:2023-11-28
Release date:2024-07-17
Last modified:2024-07-31
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Tubulin code eraser CCP5 binds branch glutamates by substrate deformation.
Nature, 2024
9EUU
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BU of 9euu by Molmil
Structure of recombinant alpha-synuclein fibrils 1B capable of seeding GCIs in vivo
Descriptor: Alpha-synuclein
Authors:Burger, D, Kashyrina, M, Lewis, A, De Nuccio, F, Mohammed, I, de La Seigliere, H, van den Heuvel, L, Feuillie, C, Verchere, J, Berbon, M, Arotcarena, M, Retailleau, A, Bezard, E, Laferriere, F, Loquet, A, Bousset, L, Baron, T, Lofrumento, D.D, De Giorgi, F, Stahlberg, H, Ichas, F.
Deposit date:2024-03-28
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (1.93 Å)
Cite:Multiple System Atrophy: Insights from aSyn Fibril Structure
To Be Published
8V3S
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BU of 8v3s by Molmil
Structure of CCP5 class3
Descriptor: Cytosolic carboxypeptidase-like protein 5, GLUTAMIC ACID, ZINC ION, ...
Authors:Chen, J, Zehr, E.A, Gruschus, J.M, Szyk, A, Liu, Y, Tanner, M.E, Tjandra, N, Roll-Mecak, A.
Deposit date:2023-11-28
Release date:2024-07-17
Last modified:2024-07-31
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Tubulin code eraser CCP5 binds branch glutamates by substrate deformation.
Nature, 2024
8V3Q
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BU of 8v3q by Molmil
Structure of CCP5 class1
Descriptor: Cytosolic carboxypeptidase-like protein 5, GLUTAMIC ACID, ZINC ION, ...
Authors:Chen, J, Zehr, E.A, Gruschus, J.M, Szyk, A, Liu, Y, Tanner, M.E, Tjandra, N, Roll-Mecak, A.
Deposit date:2023-11-28
Release date:2024-07-17
Last modified:2024-07-31
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Tubulin code eraser CCP5 binds branch glutamates by substrate deformation.
Nature, 2024
9FQ2
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BU of 9fq2 by Molmil
Poliovirus 3C protease in H32 spacegroup
Descriptor: Protease 3C
Authors:Fairhead, M, Lithgo, R.M, MacLean, E.M, Bowesman-Jones, H, Aschenbrenner, J.C, Balcomb, B.H, Capkin, E, Chandran, A.V, Godoy, A.S, Marples, P.G, Fearon, D, von Delft, F, Koekemoer, L.
Deposit date:2024-06-14
Release date:2024-06-26
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Poliovirus 3C protease in H32 spacegroup
To Be Published
8V3R
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BU of 8v3r by Molmil
Structure of CCP5 class2
Descriptor: Cytosolic carboxypeptidase-like protein 5, GLUTAMIC ACID, ZINC ION, ...
Authors:Chen, J, Zehr, E.A, Gruschus, J.M, Szyk, A, Liu, Y, Tanner, M.E, Tjandra, N, Roll-Mecak, A.
Deposit date:2023-11-28
Release date:2024-07-17
Last modified:2024-07-31
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Tubulin code eraser CCP5 binds branch glutamates by substrate deformation.
Nature, 2024
9FDD
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BU of 9fdd by Molmil
The crystal structure of full length tetramer CysB from Klebsiella aerogenes in complex with N-acetylserine
Descriptor: HTH-type transcriptional regulator CysB, N-ACETYL-SERINE
Authors:Verschueren, K.H.G, Dodson, E.J, Wilkinson, A.J.
Deposit date:2024-05-16
Release date:2024-07-03
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The Structure of the LysR-type Transcriptional Regulator, CysB, Bound to the Inducer, N-acetylserine.
Eur.Biophys.J., 2024
4RYL
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BU of 4ryl by Molmil
Human Protein Arginine Methyltransferase 3 in complex with 1-isoquinolin-6-yl-3-[2-oxo-2-(pyrrolidin-1-yl)ethyl]urea
Descriptor: 1-isoquinolin-6-yl-3-[2-oxo-2-(pyrrolidin-1-yl)ethyl]urea, PRMT3 protein, UNKNOWN ATOM OR ION
Authors:Dong, A, Dobrovetsky, E, Kaniskan, H.U, Szewczyk, M, Yu, Z, Eram, M.S, Yang, X, Schmidt, K, Luo, X, Dai, M, He, F, Zang, I, Lin, Y, Kennedy, S, Li, F, Tempel, W, Smil, D, Min, S.J, Landon, M, Lin-Jones, J, Huang, X.P, Roth, B.L, Schapira, M, Atadja, P, Barsyte-Lovejoy, D, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Brown, P.J, Zhao, K, Jin, J, Vedadi, M, Structural Genomics Consortium (SGC)
Deposit date:2014-12-15
Release date:2015-02-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A Potent, Selective and Cell-Active Allosteric Inhibitor of Protein Arginine Methyltransferase 3 (PRMT3).
Angew.Chem.Int.Ed.Engl., 54, 2015
4TNO
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BU of 4tno by Molmil
Hypothetical protein PF1117 from Pyrococcus Furiosus: Structure solved by sulfur-SAD using Swiss Light Source Data
Descriptor: CHLORIDE ION, CRISPR-associated endoribonuclease Cas2
Authors:Weinert, T, Waltersperger, S, Olieric, V, Panepucci, E, Chen, L, Rose, J.P, Wang, M, Wang, B.C, Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2014-06-04
Release date:2014-12-10
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Fast native-SAD phasing for routine macromolecular structure determination.
Nat.Methods, 12, 2015
9F3D
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BU of 9f3d by Molmil
Single acyclic phosphonate nucleotide (S)-ZNA modification on DNA hairpin
Descriptor: C modifed (S)-ZNA
Authors:Li, X, Groaz, E, Herdewijn, P, Lescrinier, E.
Deposit date:2024-04-25
Release date:2024-06-05
Last modified:2024-07-10
Method:SOLUTION NMR
Cite:Impact of Single Acyclic Phosphonate Nucleotide (ZNA) Modifications on DNA Duplex Stability.
Chemistry, 30, 2024
4TPH
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BU of 4tph by Molmil
Selectivity mechanism of a bacterial homologue of the human drug peptide transporters PepT1 and PepT2
Descriptor: 3,5 DIBROMOTYROSINE, ALANINE, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Guettou, F, Quistgaard, E, Raba, M, Moberg, P, Low, C, Nordlund, P.
Deposit date:2014-06-07
Release date:2014-07-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.155 Å)
Cite:Selectivity mechanism of a bacterial homolog of the human drug-peptide transporters PepT1 and PepT2.
Nat.Struct.Mol.Biol., 21, 2014
7OOT
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BU of 7oot by Molmil
X-ray Structure of Interferon Regulatory Factor 4 DNA binding domain bound to an interferon-stimulated response element
Descriptor: DNA (5'-D(P*AP*GP*CP*TP*TP*TP*CP*TP*CP*GP*GP*TP*TP*TP*CP*AP*GP*TP*TP*G)-3'), DNA (5'-D(P*TP*CP*AP*AP*CP*TP*GP*AP*AP*AP*CP*CP*GP*AP*GP*AP*AP*AP*GP*C)-3'), Interferon regulatory factor 4, ...
Authors:Agnarelli, A, El Omari, K, Alt, A.O, Mancini, E.J.
Deposit date:2021-05-28
Release date:2022-06-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:X-ray Structure of Interferon Regulatory Factor 4 DNA binding domain bound to interferon-stimulated response element
To Be Published
4RKO
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BU of 4rko by Molmil
Crystal structure of thrombin mutant S195T bound with PPACK
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide, ...
Authors:Pelc, A.L, Chen, Z, Gohara, D.W, Vogt, A.D, Pozzi, N, Di Cera, E.
Deposit date:2014-10-13
Release date:2015-03-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Why ser and not thr brokers catalysis in the trypsin fold.
Biochemistry, 54, 2015
4RL6
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BU of 4rl6 by Molmil
Crystal Structure of the Q04L03_STRP2 protein from Streptococcus pneumoniae. Northeast Structural Genomics Consortium Target SpR105
Descriptor: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Saccharopine dehydrogenase
Authors:Vorobiev, S, Neely, H.M, Odukwe, C.D, Seetharaman, J, Mao, L, Xiao, R, Kohan, E, Wang, D, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2014-10-15
Release date:2014-11-05
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Crystal Structure of the Q04L03_STRP2 protein from Streptococcus pneumoniae.
To be Published
4TPG
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Selectivity mechanism of a bacterial homologue of the human drug peptide transporters PepT1 and PepT2
Descriptor: Ala-L-3-Br-Tyr-Ala, DODECYL-BETA-D-MALTOSIDE, Proton:oligopeptide symporter POT family, ...
Authors:Guettou, F, Quistgaard, E.M, Raba, M, Moberg, P, Low, C, Nordlund, P.
Deposit date:2014-06-07
Release date:2014-07-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.91 Å)
Cite:Selectivity mechanism of a bacterial homolog of the human drug-peptide transporters PepT1 and PepT2.
Nat.Struct.Mol.Biol., 21, 2014
4RXV
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BU of 4rxv by Molmil
The crystal structure of the N-terminal fragment of uncharacterized protein from Legionella pneumophila
Descriptor: hypothetical protein lpg0944
Authors:Nocek, B, Cuff, M, Evdokimova, E, Egorova, O, Joachimiak, A, Ensminger, A, Savchenko, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2014-12-12
Release date:2015-04-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.099 Å)
Cite:Diverse mechanisms of metaeffector activity in an intracellular bacterial pathogen, Legionella pneumophila.
Mol Syst Biol, 12, 2016
4RPL
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BU of 4rpl by Molmil
Crystal structure of Micobacterium tuberculosis UDP-Galactopyranose mutase in complex with tetrafluorinated substrate analog UDP-F4-Galp
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, UDP-galactopyranose mutase, [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,5S,6R)-3,3,4,4-tetrafluoro-5-hydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl dihydrogen diphosphate (non-preferred name)
Authors:Van Straaten, K.E, Sanders, D.A.R.
Deposit date:2014-10-30
Release date:2015-01-21
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2499 Å)
Cite:Structural Basis of Ligand Binding to UDP-Galactopyranose Mutase from Mycobacterium tuberculosis Using Substrate and Tetrafluorinated Substrate Analogues.
J.Am.Chem.Soc., 137, 2015
4S3M
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BU of 4s3m by Molmil
Evidence of kinetic cooperativity in dimeric Ketopantoate Reductase from Staphylococcus aureus
Descriptor: 2-dehydropantoate 2-reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Sanchez, J.E, Walsh Jr, R.M, Wood, Z.A.
Deposit date:2015-02-19
Release date:2015-03-11
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Evidence of Kinetic Cooperativity in Dimeric Ketopantoate Reductase from Staphylococcus aureus.
Biochemistry, 54, 2015
4RPG
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Crystal structure of Micobacterium tuberculosis UDP-Galactopyranose mutase in complex with substrate UDP-Galp
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GALACTOSE-URIDINE-5'-DIPHOSPHATE, UDP-galactopyranose mutase, ...
Authors:Van Straaten, K.E, Sanders, D.A.R.
Deposit date:2014-10-30
Release date:2015-01-21
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4001 Å)
Cite:Structural Basis of Ligand Binding to UDP-Galactopyranose Mutase from Mycobacterium tuberculosis Using Substrate and Tetrafluorinated Substrate Analogues.
J.Am.Chem.Soc., 137, 2015

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