Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 234 results

2FCT
DownloadVisualize
BU of 2fct by Molmil
SyrB2 with Fe(II), chloride, and alpha-ketoglutarate
Descriptor: ((2R,3S,4S,5S)-3,4-DIHYDROXY-5-(HYDROXYMETHYL)-5-((2R,3S,4S,5S,6R)-3,4,5-TRIHYDROXY-6-METHOXY-TETRAHYDRO-2H-PYRAN-2-YLOXY)-TETRAHYDROFURAN-2-YL)METHYL NONANOATE, 2-OXOGLUTARIC ACID, CHLORIDE ION, ...
Authors:Blasiak, L.C, Drennan, C.L.
Deposit date:2005-12-12
Release date:2006-03-21
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of the non-haem iron halogenase SyrB2 in syringomycin biosynthesis.
Nature, 440, 2006
2FCU
DownloadVisualize
BU of 2fcu by Molmil
SyrB2 with alpha-ketoglutarate
Descriptor: ((2R,3S,4S,5S)-3,4-DIHYDROXY-5-(HYDROXYMETHYL)-5-((2R,3S,4S,5S,6R)-3,4,5-TRIHYDROXY-6-METHOXY-TETRAHYDRO-2H-PYRAN-2-YLOXY)-TETRAHYDROFURAN-2-YL)METHYL NONANOATE, 2-OXOGLUTARIC ACID, syringomycin biosynthesis enzyme 2
Authors:Blasiak, L.C, Drennan, C.L.
Deposit date:2005-12-12
Release date:2006-03-21
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of the non-haem iron halogenase SyrB2 in syringomycin biosynthesis.
Nature, 440, 2006
6WTE
DownloadVisualize
BU of 6wte by Molmil
Structure of radical S-adenosylmethionine methyltransferase, TsrM, from Kitasatospora setae with cobalamin and [4Fe-4S] cluster bound
Descriptor: 1,2-ETHANEDIOL, B12-binding domain-containing protein, COBALAMIN, ...
Authors:Knox, H.L, Chen, P.Y.-T, Drennan, C.L, Booker, S.J.
Deposit date:2020-05-02
Release date:2020-12-23
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Structural basis for non-radical catalysis by TsrM, a radical SAM methylase.
Nat.Chem.Biol., 17, 2021
6WTF
DownloadVisualize
BU of 6wtf by Molmil
Structure of radical S-adenosylmethionine methyltransferase, TsrM, from Kitasatospora setae with tryptophan substrate and SAM analog (aza-SAM) bound
Descriptor: COBALAMIN, IRON/SULFUR CLUSTER, S-5'-AZAMETHIONINE-5'-DEOXYADENOSINE, ...
Authors:Knox, H.L, Chen, P.Y.-T, Drennan, C.L, Booker, S.J.
Deposit date:2020-05-02
Release date:2020-12-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Structural basis for non-radical catalysis by TsrM, a radical SAM methylase.
Nat.Chem.Biol., 17, 2021
8TWN
DownloadVisualize
BU of 8twn by Molmil
Crystal structure of nitrile synthase AetD with substrate bound
Descriptor: (2S)-2-azanyl-3-[5,7-bis(bromanyl)-1H-indol-3-yl]propanoic acid, AetD, D-MALATE
Authors:Ye, N, Drennan, C.L.
Deposit date:2023-08-21
Release date:2024-08-28
Last modified:2024-10-02
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:A single diiron enzyme catalyses the oxidative rearrangement of tryptophan to indole nitrile.
Nat.Chem., 2024
8TWT
DownloadVisualize
BU of 8twt by Molmil
Crystal structure of nitrile synthase AetD with substrate bound and cofactor partially assembled
Descriptor: (2S)-2-azanyl-3-[5,7-bis(bromanyl)-1H-indol-3-yl]propanoic acid, AetD, D-MALATE, ...
Authors:Ye, N, Drennan, C.L.
Deposit date:2023-08-21
Release date:2024-08-28
Last modified:2024-10-02
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A single diiron enzyme catalyses the oxidative rearrangement of tryptophan to indole nitrile.
Nat.Chem., 2024
8TWW
DownloadVisualize
BU of 8tww by Molmil
Crystal structure of nitrile synthase AetD with substrate bound and cofactor fully assembled
Descriptor: (2S)-2-azanyl-3-[5,7-bis(bromanyl)-1H-indol-3-yl]propanoic acid, AetD, FE (III) ION
Authors:Ye, N, Drennan, C.L.
Deposit date:2023-08-21
Release date:2024-08-28
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:A single diiron enzyme catalyses the oxidative rearrangement of tryptophan to indole nitrile.
Nat.Chem., 2024
8USP
DownloadVisualize
BU of 8usp by Molmil
Structural and biochemical investigations of a HEAT-repeat protein involved in the cytosolic iron-sulfur cluster assembly pathway
Descriptor: DNA repair/transcription protein MET18/MMS19
Authors:Vasquez, S, Drennan, C.L.
Deposit date:2023-10-28
Release date:2023-12-27
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural and biochemical investigations of a HEAT-repeat protein involved in the cytosolic iron-sulfur cluster assembly pathway.
Commun Biol, 6, 2023
8USQ
DownloadVisualize
BU of 8usq by Molmil
Structural and biochemical investigations of a HEAT-repeat protein involved in the cytosolic iron-sulfur cluster assembly pathway
Descriptor: DNA repair/transcription protein MET18/MMS19
Authors:Vasquez, S, Drennan, C.L.
Deposit date:2023-10-29
Release date:2023-12-27
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (12.77 Å)
Cite:Structural and biochemical investigations of a HEAT-repeat protein involved in the cytosolic iron-sulfur cluster assembly pathway.
Commun Biol, 6, 2023
8VHU
DownloadVisualize
BU of 8vhu by Molmil
Crystal structure of dATP bound E. coli class Ia ribonucleotide reductase alpha construct fused with the C-terminal tail of E. coli class Ia beta subunit
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CHLORIDE ION, Fusion protein of Ribonucleoside-diphosphate reductase 1 subunits alpha and beta, ...
Authors:Funk, M.A, Zimanyi, C.M, Drennan, C.L.
Deposit date:2024-01-02
Release date:2024-09-04
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:How ATP and dATP Act as Molecular Switches to Regulate Enzymatic Activity in the Prototypical Bacterial Class Ia Ribonucleotide Reductase.
Biochemistry, 63, 2024
8VHQ
DownloadVisualize
BU of 8vhq by Molmil
Crystal structure of E. coli class Ia ribonucleotide reductase alpha subunit W28A variant bound to dATP and ATP
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Funk, M.A, Zimanyi, C.M, Drennan, C.L.
Deposit date:2024-01-02
Release date:2024-09-04
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:How ATP and dATP Act as Molecular Switches to Regulate Enzymatic Activity in the Prototypical Bacterial Class Ia Ribonucleotide Reductase.
Biochemistry, 63, 2024
8VHO
DownloadVisualize
BU of 8vho by Molmil
Crystal Structure of E. coli class Ia ribonucleotide reductase alpha subunit bound to dATP
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, ...
Authors:Funk, M.A, Zimanyi, C.M, Drennan, C.L.
Deposit date:2024-01-02
Release date:2024-09-04
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.548 Å)
Cite:How ATP and dATP Act as Molecular Switches to Regulate Enzymatic Activity in the Prototypical Bacterial Class Ia Ribonucleotide Reductase.
Biochemistry, 63, 2024
8VHR
DownloadVisualize
BU of 8vhr by Molmil
Crystal structure of E. coli class Ia ribonucleotide reductase alpha subunit W28A variant bound to dATP and GTP
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Funk, M.A, Zimanyi, C.M, Drennan, C.L.
Deposit date:2024-01-02
Release date:2024-09-04
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (3.55 Å)
Cite:How ATP and dATP Act as Molecular Switches to Regulate Enzymatic Activity in the Prototypical Bacterial Class Ia Ribonucleotide Reductase.
Biochemistry, 63, 2024
8VHP
DownloadVisualize
BU of 8vhp by Molmil
Crystal structure of E. coli class Ia ribonucleotide reductase alpha subunit W28A variant bound to CDP and two molecules of ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CYTIDINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Funk, M.A, Zimanyi, C.M, Drennan, C.L.
Deposit date:2024-01-02
Release date:2024-09-04
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.608 Å)
Cite:How ATP and dATP Act as Molecular Switches to Regulate Enzymatic Activity in the Prototypical Bacterial Class Ia Ribonucleotide Reductase.
Biochemistry, 63, 2024
8VHN
DownloadVisualize
BU of 8vhn by Molmil
Crystal Structure of E. coli class Ia ribonucleotide reductase alpha subunit bound to two ATP molecules
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, ...
Authors:Funk, M.A, Zimanyi, C.M, Drennan, C.L.
Deposit date:2024-01-02
Release date:2024-09-04
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:How ATP and dATP Act as Molecular Switches to Regulate Enzymatic Activity in the Prototypical Bacterial Class Ia Ribonucleotide Reductase.
Biochemistry, 63, 2024
6XOJ
DownloadVisualize
BU of 6xoj by Molmil
ScoE with the CABA substrate bound and alpha-ketoglutarate in an off-site
Descriptor: (3~{R})-3-(2-hydroxy-2-oxoethylamino)butanoic acid, 2-OXOGLUTARIC ACID, ACETATE ION, ...
Authors:Jonnalagadda, R, Drennan, C.L.
Deposit date:2020-07-07
Release date:2021-01-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Biochemical and crystallographic investigations into isonitrile formation by a nonheme iron-dependent oxidase/decarboxylase.
J.Biol.Chem., 296, 2021
6XN6
DownloadVisualize
BU of 6xn6 by Molmil
ScoE with the CABA substrate bound and His299 and Arg157 flipped out
Descriptor: (3~{R})-3-(2-hydroxy-2-oxoethylamino)butanoic acid, ACETATE ION, CHLORIDE ION, ...
Authors:Jonnalagadda, R, Drennan, C.L.
Deposit date:2020-07-02
Release date:2021-01-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Biochemical and crystallographic investigations into isonitrile formation by a nonheme iron-dependent oxidase/decarboxylase.
J.Biol.Chem., 296, 2021
6XPA
DownloadVisualize
BU of 6xpa by Molmil
ScoE with oxovanadium and the CABA substrate bound and His299 and Arg157 flipped out
Descriptor: (3~{R})-3-(2-hydroxy-2-oxoethylamino)butanoic acid, ACETATE ION, CHLORIDE ION, ...
Authors:Jonnalagadda, R, Drennan, C.L.
Deposit date:2020-07-08
Release date:2021-01-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Biochemical and crystallographic investigations into isonitrile formation by a nonheme iron-dependent oxidase/decarboxylase.
J.Biol.Chem., 296, 2021
6XO3
DownloadVisualize
BU of 6xo3 by Molmil
ScoE with alpha-ketoglutarate in an off-site
Descriptor: 2-OXOGLUTARIC ACID, CHLORIDE ION, FE (II) ION, ...
Authors:Jonnalagadda, R, Drennan, C.L.
Deposit date:2020-07-06
Release date:2021-01-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Biochemical and crystallographic investigations into isonitrile formation by a nonheme iron-dependent oxidase/decarboxylase.
J.Biol.Chem., 296, 2021
4IXM
DownloadVisualize
BU of 4ixm by Molmil
Crystal structure of Zn(II)-bound YjiA GTPase from E. coli
Descriptor: SULFATE ION, Uncharacterized GTP-binding protein YjiA, ZINC ION
Authors:Jost, M, Ryan, K.S, Turo, K.E, Drennan, C.L.
Deposit date:2013-01-26
Release date:2013-02-27
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Metal binding properties of Escherichia coli YjiA, a member of the metal homeostasis-associated COG0523 family of GTPases.
Biochemistry, 52, 2013
6MSO
DownloadVisualize
BU of 6mso by Molmil
Crystal structure of mitochondrial fumarate hydratase from Leishmania major in a complex with inhibitor thiomalate
Descriptor: (2S)-2-sulfanylbutanedioic acid, GLYCEROL, IRON/SULFUR CLUSTER, ...
Authors:Feliciano, P.R, Drennan, C.L, Nonato, M.C.
Deposit date:2018-10-17
Release date:2019-01-30
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.053 Å)
Cite:Crystal Structures of Fumarate Hydratases from Leishmania major in a Complex with Inhibitor 2-Thiomalate.
ACS Chem. Biol., 14, 2019
6N2N
DownloadVisualize
BU of 6n2n by Molmil
Crystal structure of 2-oxoglutarate:ferredoxin oxidoreductase from Magnetococcus marinus
Descriptor: IRON/SULFUR CLUSTER, MAGNESIUM ION, Pyruvate ferredoxin/flavodoxin oxidoreductase, ...
Authors:Chen, P.Y.-T, Drennan, C.L.
Deposit date:2018-11-13
Release date:2019-03-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.937 Å)
Cite:A reverse TCA cycle 2-oxoacid:ferredoxin oxidoreductase that makes C-C bonds from CO2.
Joule, 3, 2019
6MSN
DownloadVisualize
BU of 6msn by Molmil
Crystal structure of cytosolic fumarate hydratase from Leishmania major in a complex with inhibitor thiomalate
Descriptor: (2S)-2-sulfanylbutanedioic acid, IRON/SULFUR CLUSTER, fumarate hydratase
Authors:Feliciano, P.R, Drennan, C.L, Nonato, M.C.
Deposit date:2018-10-17
Release date:2019-01-30
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.591 Å)
Cite:Crystal Structures of Fumarate Hydratases from Leishmania major in a Complex with Inhibitor 2-Thiomalate.
ACS Chem. Biol., 14, 2019
6ND3
DownloadVisualize
BU of 6nd3 by Molmil
wild-type choline TMA lyase in complex with betaine aldehyde
Descriptor: BETAINE ALDEHYDE, Choline trimethylamine-lyase
Authors:Funk, M.A, Drennan, C.L.
Deposit date:2018-12-13
Release date:2019-01-16
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.364 Å)
Cite:Structure-Guided Identification of a Small Molecule That Inhibits Anaerobic Choline Metabolism by Human Gut Bacteria.
J.Am.Chem.Soc., 141, 2019
4IXN
DownloadVisualize
BU of 4ixn by Molmil
Crystal Structure of Zn(II)-bound E37A,C66A,C67A triple mutant YjiA GTPase
Descriptor: SULFATE ION, Uncharacterized GTP-binding protein YjiA, ZINC ION
Authors:Jost, M, Drennan, C.L.
Deposit date:2013-01-26
Release date:2013-02-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Metal binding properties of Escherichia coli YjiA, a member of the metal homeostasis-associated COG0523 family of GTPases.
Biochemistry, 52, 2013

226707

數據於2024-10-30公開中

PDB statisticsPDBj update infoContact PDBjnumon