Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 788 results

1MNH
DownloadVisualize
BU of 1mnh by Molmil
INTERACTIONS AMONG RESIDUES CD3, E7, E10 AND E11 IN MYOGLOBINS: ATTEMPTS TO SIMULATE THE O2 AND CO BINDING PROPERTIES OF APLYSIA MYOGLOBIN
Descriptor: MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE
Authors:Davies, G.J, Wilkinson, A.J.
Deposit date:1995-01-11
Release date:1995-05-08
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Interactions among residues CD3, E7, E10, and E11 in myoglobins: attempts to simulate the ligand-binding properties of Aplysia myoglobin.
Biochemistry, 34, 1995
1DYO
DownloadVisualize
BU of 1dyo by Molmil
Xylan-Binding Domain from CBM 22, formally x6b domain
Descriptor: CALCIUM ION, ENDO-1,4-BETA-XYLANASE Y
Authors:Davies, G.J, Charnock, S.J, Gilbert, H.J, Fontes, C.M.G.A.
Deposit date:2000-02-03
Release date:2000-07-04
Last modified:2019-07-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The X6 Thermostabilising Domains of Xylanases are Carbohydrate Binding Modules: Structure and Biochemistry of the Clostridium Thermocellum X6B Domain
Biochemistry, 39, 2000
7TAA
DownloadVisualize
BU of 7taa by Molmil
FAMILY 13 ALPHA AMYLASE IN COMPLEX WITH ACARBOSE
Descriptor: CALCIUM ION, MODIFIED ACARBOSE HEXASACCHARIDE, TAKA AMYLASE
Authors:Davies, G.J, Brzozowski, A.M.
Deposit date:1997-10-06
Release date:1998-11-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structure of the Aspergillus oryzae alpha-amylase complexed with the inhibitor acarbose at 2.0 A resolution.
Biochemistry, 36, 1997
4PCS
DownloadVisualize
BU of 4pcs by Molmil
Crystal structure of a bacterial fucosidase with iminosugar (2S,3S,4R,5S)-3,4-dihydroxy-2-[2'-phenyl]ethynyl-5-methylpyrrolidine
Descriptor: (2S,3R,4S,5S)-2-methyl-5-(phenylethynyl)pyrrolidine-3,4-diol, Alpha-L-fucosidase, IMIDAZOLE, ...
Authors:Davies, G.J, Wright, D.W, Behr, J.B.
Deposit date:2014-04-16
Release date:2014-07-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Exploiting the Hydrophobic Terrain in Fucosidases with Aryl-Substituted Pyrrolidine Iminosugars.
Chembiochem, 16, 2015
1W9X
DownloadVisualize
BU of 1w9x by Molmil
Bacillus halmapalus alpha amylase
Descriptor: 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose, ALPHA AMYLASE, CALCIUM ION, ...
Authors:Davies, G.J, Brzozowski, A.M, Dauter, Z, Rasmussen, M.D, Borchert, T.V, Wilson, K.S.
Deposit date:2004-10-20
Release date:2005-02-09
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of a Bacillus Halmapalus Family 13 Alpha-Amylase, Bha, in Complex with an Acarbose-Derived Nonasaccharide at 2.1 A Resolution
Acta Crystallogr.,Sect.D, 61, 2005
2WAR
DownloadVisualize
BU of 2war by Molmil
Hen Egg White Lysozyme E35Q chitopentaose complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, LYSOZYME C
Authors:Davies, G.J, Withers, S.G, Vocadlo, D.J.
Deposit date:2009-02-13
Release date:2010-02-09
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Chitopentaose Complex of a Mutant Hen Egg-White Lysozyme Displays No Distortion of the -1 Sugar Away from a 4C1 Chair Conformation
Aust.J.Chem., 62, 2009
1DYS
DownloadVisualize
BU of 1dys by Molmil
Endoglucanase CEL6B from Humicola insolens
Descriptor: ENDOGLUCANASE
Authors:Davies, G.J, Brzozowski, A.M, Dauter, M, Varrot, A, Schulein, M.
Deposit date:2000-02-08
Release date:2001-02-08
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure and Function of Humicola Insolens Family 6 Cellulases: Structure of the Endoglucanase, Cel6B, at 1.6 A Resolution
Biochem.J., 348, 2000
1UX7
DownloadVisualize
BU of 1ux7 by Molmil
Carbohydrate-Binding Module CBM36 in complex with calcium and xylotriose
Descriptor: CALCIUM ION, ENDO-1,4-BETA-XYLANASE D, SULFATE ION, ...
Authors:Davies, G.J, Boraston, A.B, Jamal, S.
Deposit date:2004-02-19
Release date:2004-10-27
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Ab Initio Structure Determination and Functional Characterization of Cbm36: A New Family of Calcium-Dependent Carbohydrate Binding Modules
Structure, 12, 2004
2A3H
DownloadVisualize
BU of 2a3h by Molmil
CELLOBIOSE COMPLEX OF THE ENDOGLUCANASE CEL5A FROM BACILLUS AGARADHERANS AT 2.0 A RESOLUTION
Descriptor: ENDOGLUCANASE, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Davies, G.J, Brzozowski, A.M, Andersen, K, Schulein, M.
Deposit date:1998-01-22
Release date:1999-03-16
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the Bacillus agaradherans family 5 endoglucanase at 1.6 A and its cellobiose complex at 2.0 A resolution
Biochemistry, 37, 1998
1CZ1
DownloadVisualize
BU of 1cz1 by Molmil
EXO-B-(1,3)-GLUCANASE FROM CANDIDA ALBICANS AT 1.85 A RESOLUTION
Descriptor: PROTEIN (EXO-B-(1,3)-GLUCANASE)
Authors:Cutfield, S.M, Davies, G.J, Murshudov, G, Anderson, B.F, Moody, P.C.E, Sullivan, P.A, Cutfield, J.F.
Deposit date:1999-09-01
Release date:2000-01-03
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The structure of the exo-beta-(1,3)-glucanase from Candida albicans in native and bound forms: relationship between a pocket and groove in family 5 glycosyl hydrolases.
J.Mol.Biol., 294, 1999
4V27
DownloadVisualize
BU of 4v27 by Molmil
Structure of the GH99 endo-alpha-mannanase from Bacteroides xylanisolvens in complex with mannose-alpha-1,3-isofagomine
Descriptor: 1,2-ETHANEDIOL, 5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE, GLYCOSYL HYDROLASE FAMILY 71, ...
Authors:Hakki, Z, Bellmaine, S, Thompson, A.J, Speciale, G, Davies, G.J, Williams, S.J.
Deposit date:2014-10-07
Release date:2014-12-24
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and Kinetic Dissection of the Endo-Alpha-1,2-Mannanase Activity of Bacterial Gh99 Glycoside Hydrolases from Bacteroides Spp.
Chemistry, 21, 2015
4V28
DownloadVisualize
BU of 4v28 by Molmil
Structure of an E333Q variant of the GH99 endo-alpha-mannanase from Bacteroides xylanisolvens in complex with Man-Man-Methylumbelliferone
Descriptor: 1,2-ETHANEDIOL, 7-hydroxy-4-methyl-2H-chromen-2-one, ACETATE ION, ...
Authors:Hakki, Z, Bellmaine, S, Thompson, A.J, Speciale, G, Davies, G.J, Williams, S.J.
Deposit date:2014-10-07
Release date:2014-12-24
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural and Kinetic Dissection of the Endo-Alpha-1,2-Mannanase Activity of Bacterial Gh99 Glycoside Hydrolases from Bacteroides Spp.
Chemistry, 21, 2015
4UTF
DownloadVisualize
BU of 4utf by Molmil
Structure of the GH99 endo-alpha-mannosidase from Bacteroides xylanisolvens in complex with mannose-alpha-1,3-isofagomine and alpha- 1,2-mannobiose
Descriptor: 1,2-ETHANEDIOL, 5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE, GLYCOSYL HYDROLASE FAMILY 71, ...
Authors:Cuskin, F, Lowe, E.C, Temple, M.J, Zhu, Y, Pudlo, N.A, Cameron, E.A, Urs, K, Thompson, A.J, Cartmell, A, Rogowski, A, Tolbert, T, Piens, K, Bracke, D, Vervecken, W, Hakki, Z, Speciale, G, Munoz-Munoz, J.L, Pena, M.J, McLean, R, Suits, M.D, Boraston, A.B, Atherly, T, Ziemer, C.J, Williams, S.J, Davies, G.J, Abbott, D.W, Martens, E.C, Gilbert, H.J.
Deposit date:2014-07-21
Release date:2014-12-24
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Human Gut Bacteroidetes Can Utilize Yeast Mannan Through a Selfish Mechanism.
Nature, 517, 2015
8RW3
DownloadVisualize
BU of 8rw3 by Molmil
Crystal Structure of Agd31B, alpha-transglucosylase, complexed with a non-covalent 1,2- Cyclophellitol aziridine
Descriptor: (1~{S},2~{R},3~{R},4~{R},6~{S})-4-(hydroxymethyl)-7-azabicyclo[4.1.0]heptane-2,3-diol, 1,2-ETHANEDIOL, OXALATE ION, ...
Authors:Moran, E, Davies, G, Ofamn, T, Heming, J, Nin-Hill, A, Kullmer, F, Steneker, R, Klein, A, Bennett, M, Ruijgrok, G, Kok, K, Aerts, J, Van der Marel, G, Rovira, C, Artola, M, Codee, J, Overkleeft, H.
Deposit date:2024-02-02
Release date:2024-05-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Conformational and Electronic Variations in 1,2- and 1,5a-Cyclophellitols and their Impact on Retaining alpha-Glucosidase Inhibition.
Chemistry, 2024
4UZU
DownloadVisualize
BU of 4uzu by Molmil
Three-dimensional structure of a variant `Termamyl-like' Geobacillus stearothermophilus alpha-amylase at 1.9 A resolution
Descriptor: ALPHA-AMYLASE, CALCIUM ION, CHLORIDE ION, ...
Authors:Offen, W.A, Anderson, C, Borchert, T.V, Wilson, K.S, Davies, G.J.
Deposit date:2014-09-09
Release date:2015-01-14
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Three-Dimensional Structure of a Variant `Termamyl-Like' Geobacillus Stearothermophilus Alpha-Amylase at 1.9 A Resolution
Acta Crystallogr.,Sect.F, 71, 2015
8CM9
DownloadVisualize
BU of 8cm9 by Molmil
Structure of human O-GlcNAc transferase in complex with UDP and tP11
Descriptor: PHE-MET-PRO-LYS-TYR-SER-ILE, UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit, URIDINE-5'-DIPHOSPHATE
Authors:Meek, R.W, Davies, G.J.
Deposit date:2023-02-18
Release date:2023-10-04
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Phage display uncovers a sequence motif that drives polypeptide binding to a conserved regulatory exosite of O-GlcNAc transferase.
Proc.Natl.Acad.Sci.USA, 120, 2023
8CE3
DownloadVisualize
BU of 8ce3 by Molmil
Crystal structure of MGAT5 (alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase V) luminal domain with a Lys329-Ile345 loop truncation, in complex with 3D fragment 2548
Descriptor: (3~{S})-1-ethanoyl-3-(4-methylphenyl)piperidine-3-carboxylic acid, 1,2-ETHANEDIOL, Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A, ...
Authors:Gilio, A.K, Darby, J.F, Wu, L, Davies, G.J.
Deposit date:2023-02-01
Release date:2024-02-21
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:A Modular 3-D Fragment Collection: Design, Synthesis and Screening
To Be Published
4UTU
DownloadVisualize
BU of 4utu by Molmil
Structural and biochemical characterization of the N- acetylmannosamine-6-phosphate 2-epimerase from Clostridium perfringens
Descriptor: CHLORIDE ION, N-ACETYLMANNOSAMINE-6-PHOSPHATE 2-EPIMERASE, N-acetylmannosamine-6-phosphate
Authors:Pelissier, M.C, Sebban-Kreuzer, C, Guerlesquin, F, Brannigan, J.A, Davies, G.J, Bourne, Y, Vincent, F.
Deposit date:2014-07-23
Release date:2014-10-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural and Functional Characterization of the Clostridium Perfringens N-Acetylmannosamine-6-Phosphate 2-Epimerase Essential for the Sialic Acid Salvage Pathway
J.Biol.Chem., 289, 2014
4UTW
DownloadVisualize
BU of 4utw by Molmil
Structural characterisation of NanE, ManNac6P C2 epimerase, from Clostridium perfingens
Descriptor: CHLORIDE ION, N-acetyl-D-glucosamine-6-phosphate, PUTATIVE N-ACETYLMANNOSAMINE-6-PHOSPHATE 2-EPIMERASE
Authors:Pelissier, M.C, Sebban-Kreuzer, C, Guerlesquin, F, Brannigan, J.A, Davies, G.J, Bourne, Y, Vincent, F.
Deposit date:2014-07-23
Release date:2014-10-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and Functional Characterization of the Clostridium Perfringens N-Acetylmannosamine-6-Phosphate 2-Epimerase Essential for the Sialic Acid Salvage Pathway
J.Biol.Chem., 289, 2014
8C54
DownloadVisualize
BU of 8c54 by Molmil
Cryo-EM structure of NADH bound SLA dehydrogenase RlGabD from Rhizobium leguminosarum bv. trifolii SRD1565
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Succinate semialdehyde dehydrogenase
Authors:Sharma, M, Meek, R.W, Armstrong, Z, Blaza, J.N, Alhifthi, A, Li, J, Goddard-Borger, E.D, Williams, S.J, Davies, G.J.
Deposit date:2023-01-06
Release date:2023-09-20
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (2.52 Å)
Cite:Molecular basis of sulfolactate synthesis by sulfolactaldehyde dehydrogenase from Rhizobium leguminosarum.
Chem Sci, 14, 2023
8PEJ
DownloadVisualize
BU of 8pej by Molmil
CjGH35 with a Galactosidase Activity-Based Probe
Descriptor: (1~{S},2~{S},4~{S},5~{R})-6-(hydroxymethyl)cyclohexane-1,2,3,4,5-pentol, ACETATE ION, Beta-galactosidase, ...
Authors:Offen, W.A, Davies, G.J.
Deposit date:2023-06-14
Release date:2023-10-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The development of a broad-spectrum retaining beta-exo-galactosidase activity-based probe.
Org.Biomol.Chem., 21, 2023
8R06
DownloadVisualize
BU of 8r06 by Molmil
CRYSTAL STRUCTURE OF THERMOANAEROBACTERIUM XYLANOLYTICUM GH116 BETA-GLUCOSIDASE WITH A COVALENTLY BOUND CYCLOPHELLITOL AZIRIDINE
Descriptor: (1~{R},2~{S},3~{S},4~{S},5~{R},6~{R})-5-azanyl-6-(hydroxymethyl)cyclohexane-1,2,3,4-tetrol, CALCIUM ION, CHLORIDE ION, ...
Authors:Offen, W.A, Davies, G.J, Breen, I.Z.
Deposit date:2023-10-30
Release date:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:CRYSTAL STRUCTURE OF THERMOANAEROBACTERIUM XYLOLYTICUM GH116 BETA-GLUCOSIDASE WITH A COVALENTLY BOUND CYCLOPHELLITOL AZIRIDINE
JACS, 40, 2017
8RVK
DownloadVisualize
BU of 8rvk by Molmil
Maltodextrin phosphorylase (MalP) in complex with a alpha-1,2-cyclophellitol analogue
Descriptor: (3~{a}~{R},4~{R},5~{R},6~{R},7~{a}~{S})-6-(hydroxymethyl)-4,5-bis(oxidanyl)-3~{a},4,5,6,7,7~{a}-hexahydro-3~{H}-1,3-benzoxazol-2-one, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, ...
Authors:Bennett, M, Ofman, T.P, Overkleeft, H.S, Davies, G.J.
Deposit date:2024-02-01
Release date:2024-05-15
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Conformational and Electronic Variations in 1,2- and 1,5a-Cyclophellitols and their Impact on Retaining alpha-Glucosidase Inhibition.
Chemistry, 2024
8C4I
DownloadVisualize
BU of 8c4i by Molmil
Ligand-free Crystal Structure of the decameric Sulfofructose Transaldolase BmSF-TAL
Descriptor: BmSF-TAL
Authors:Snow, A.J.D, Sharma, M, Davies, G.J.
Deposit date:2023-01-04
Release date:2023-02-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure and mechanism of sulfofructose transaldolase, a key enzyme in sulfoquinovose metabolism.
Structure, 31, 2023
4V1R
DownloadVisualize
BU of 4v1r by Molmil
Structure of a selenomethionine derivative of the GH76 alpha- mannanase BT2949 Bacteroides thetaiotaomicron
Descriptor: 1,2-ETHANEDIOL, ALPHA-1,6-MANNANASE, S,R MESO-TARTARIC ACID
Authors:Thompson, A.J, Cuskin, F, Spears, R.J, Dabin, J, Turkenburg, J.P, Gilbert, H.J, Davies, G.J.
Deposit date:2014-10-02
Release date:2015-02-11
Last modified:2015-02-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of the Gh76 Alpha-Mannanase Homolog, Bt2949, from the Gut Symbiont Bacteroides Thetaiotaomicron
Acta Crystallogr.,Sect.D, 71, 2015

220472

PDB entries from 2024-05-29

PDB statisticsPDBj update infoContact PDBjnumon