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PDB: 3021 results

2HT7
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N8 neuraminidase in open complex with oseltamivir
Descriptor: (3R,4R,5S)-4-(acetylamino)-5-amino-3-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic acid, Neuraminidase
Authors:Russell, R.J, Haire, L.F, Stevens, D.J, Collins, P.J, Lin, Y.P, Blackburn, G.M, Hay, A.J, Gamblin, S.J, Skehel, J.J.
Deposit date:2006-07-25
Release date:2006-09-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The structure of H5N1 avian influenza neuraminidase suggests new opportunities for drug design.
Nature, 443, 2006
2JXR
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STRUCTURE OF YEAST PROTEINASE A
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, N-(morpholin-4-ylcarbonyl)-L-phenylalanyl-N-[(1R)-1-(cyclohexylmethyl)-3,3-difluoro-2,2-dihydroxy-4-(methylamino)-4-oxobutyl]-L-norleucinamide, PROTEINASE A, ...
Authors:Aguilar, C.F, Badasso, M, Dreyer, T, Cronin, N.B, Newman, M.P, Cooper, J.B, Hoover, D.J, Wood, S.P, Johnson, M.S, Blundell, T.L.
Deposit date:1997-04-24
Release date:1997-10-29
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The three-dimensional structure at 2.4 A resolution of glycosylated proteinase A from the lysosome-like vacuole of Saccharomyces cerevisiae.
J.Mol.Biol., 267, 1997
2JUB
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BU of 2jub by Molmil
Solution structure of IPI*
Descriptor: Internal protein I
Authors:Rifat, D, Wright, N.T, Varney, K.M, Weber, D.J, Black, L.W.
Deposit date:2007-08-17
Release date:2007-12-11
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Restriction endonuclease inhibitor IPI* of bacteriophage T4: a novel structure for a dedicated target.
J.Mol.Biol., 375, 2008
2LEW
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BU of 2lew by Molmil
Structural Plasticity of Paneth cell alpha-Defensins: Characterization of Salt-Bridge Deficient Analogues of Mouse Cryptdin-4
Descriptor: Alpha-defensin 4
Authors:Rosengren, K, Andersson, H.S, Haugaard-Kedstrom, L.M, Bengtsson, E, Daly, N.L, Craik, D.J.
Deposit date:2011-06-24
Release date:2012-05-16
Last modified:2013-06-19
Method:SOLUTION NMR
Cite:The alpha-defensin salt-bridge induces backbone stability to facilitate folding and confer proteolytic resistance.
Amino Acids, 43, 2012
2L7M
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BU of 2l7m by Molmil
Solution Structure of the Pitx2 Homeodomain R24H mutant
Descriptor: Pituitary homeobox 2
Authors:Doerdelmann, T, Rance, M, Kojetin, D.J, Baird-Titus, J.M.
Deposit date:2010-12-14
Release date:2011-12-14
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution Structure of the Pitx2 Homeodomain R24H mutant
To be Published
2LMS
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BU of 2lms by Molmil
A single GalNAc residue on Threonine-106 modifies the dynamics and the structure of Interferon alpha-2a around the glycosylation site
Descriptor: 2-acetamido-2-deoxy-alpha-D-galactopyranose, Interferon alpha-2
Authors:Ghasriani, H, Belcourt, P.J.F, Sauve, S, Hodgson, D.J, Gingras, G, Brochu, D, Gilbert, M, Aubin, Y.
Deposit date:2011-12-12
Release date:2012-12-05
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:A single N-acetylgalactosamine residue at threonine 106 modifies the dynamics and structure of interferon alpha2a around the glycosylation site.
J.Biol.Chem., 288, 2013
2LET
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AN 1H NMR DETERMINATION OF THE THREE DIMENSIONAL STRUCTURES OF MIRROR IMAGE FORMS OF A LEU-5 VARIANT OF THE TRYPSIN INHIBITOR ECBALLIUM ELATERIUM (EETI-II)
Descriptor: TRYPSIN INHIBITOR II
Authors:Nielsen, K.J, Alewood, D, Andrews, J, Kent, S.B.H, Craik, D.J.
Deposit date:1994-01-04
Release date:1994-05-31
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:An 1H NMR determination of the three-dimensional structures of mirror-image forms of a Leu-5 variant of the trypsin inhibitor from Ecballium elaterium (EETI-II).
Protein Sci., 3, 1994
2L7F
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Solution Structure of the Pitx2 Homeodomain
Descriptor: Pituitary homeobox 2
Authors:Doerdelmann, T, Rance, M, Baird-Titus, J.M, Kojetin, D.J.
Deposit date:2010-12-08
Release date:2011-12-14
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution Structure of the Pitx2 Homeodomain
To be Published
4OUD
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BU of 4oud by Molmil
Engineered tyrosyl-tRNA synthetase with the nonstandard amino acid L-4,4-biphenylalanine
Descriptor: TYROSINE, Tyrosyl-tRNA synthetase
Authors:Takeuchi, R, Mandell, D.J, Lajoie, M.J, Church, G.M, Stoddard, B.L.
Deposit date:2014-02-16
Release date:2015-01-28
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Biocontainment of genetically modified organisms by synthetic protein design.
Nature, 518, 2015
4OEC
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BU of 4oec by Molmil
Crystal structure of glycerophosphodiester phosphodiesterase from Thermococcus kodakarensis KOD1
Descriptor: Glycerophosphoryl diester phosphodiesterase, MAGNESIUM ION
Authors:Atsuta, Y, You, D.J, Takano, K, Koga, Y, Kanaya, S.
Deposit date:2014-01-13
Release date:2015-01-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of glycerophosphodiester phosphodiesterase from Thermococcus kodakarensis KOD1
To be Published
4P32
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Crystal structure of E. coli LptB in complex with ADP-magnesium
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Lipopolysaccharide export system ATP-binding protein LptB, MAGNESIUM ION
Authors:Sherman, D.J, Lazarus, M.B, Murphy, L, Liu, C, Walker, S, Ruiz, N, Kahne, D.
Deposit date:2014-03-05
Release date:2014-03-26
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Decoupling catalytic activity from biological function of the ATPase that powers lipopolysaccharide transport.
Proc.Natl.Acad.Sci.USA, 111, 2014
4P33
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Crystal structure of E. coli LptB-E163Q in complex with ATP-sodium
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, Lipopolysaccharide export system ATP-binding protein LptB, ...
Authors:Sherman, D.J, Lazarus, M.B, Murphy, L, Liu, C, Walker, S, Ruiz, N, Kahne, D.
Deposit date:2014-03-05
Release date:2014-03-26
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Decoupling catalytic activity from biological function of the ATPase that powers lipopolysaccharide transport.
Proc.Natl.Acad.Sci.USA, 111, 2014
4P7O
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BU of 4p7o by Molmil
Structure of Escherichia coli PgaB C-terminal domain, P1 crystal form
Descriptor: Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase
Authors:Little, D.J, Li, G, Ing, C, DiFrancesco, B, Bamford, N.C, Robinson, H, Nitz, M, Pomes, R, Howell, P.L.
Deposit date:2014-03-27
Release date:2014-07-02
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Modification and periplasmic translocation of the biofilm exopolysaccharide poly-beta-1,6-N-acetyl-D-glucosamine.
Proc.Natl.Acad.Sci.USA, 111, 2014
4P7L
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BU of 4p7l by Molmil
Structure of Escherichia coli PgaB C-terminal domain, P212121 crystal form
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase
Authors:Little, D.J, Li, G, Ing, C, DiFrancesco, B, Bamford, N.C, Robinson, H, Nitz, M, Pomes, R, Howell, P.L.
Deposit date:2014-03-27
Release date:2014-07-02
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:Modification and periplasmic translocation of the biofilm exopolysaccharide poly-beta-1,6-N-acetyl-D-glucosamine.
Proc.Natl.Acad.Sci.USA, 111, 2014
4PEF
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BU of 4pef by Molmil
Dbr1 in complex with sulfate
Descriptor: GLYCEROL, MANGANESE (II) ION, RNA lariat debranching enzyme, ...
Authors:Montemayor, E.J, Katolik, A, Clark, N.E, Taylor, A.B, Schuermann, J.P, Combs, D.J, Johnsson, R, Holloway, S.P, Stevens, S.W, Damha, M.J, Hart, P.J.
Deposit date:2014-04-23
Release date:2014-08-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structural basis of lariat RNA recognition by the intron debranching enzyme Dbr1.
Nucleic Acids Res., 42, 2014
4P9G
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BU of 4p9g by Molmil
Structure of the 2,4'-dihydroxyacetophenone dioxygenase from Alcaligenes sp.
Descriptor: 2,4'-dihydroxyacetophenone dioxygenase, CARBONATE ION, FE (III) ION, ...
Authors:Keegan, R, Lebedev, A, Erskine, P, Guo, J, Wood, S.P, Hopper, D.J, Cooper, J.B.
Deposit date:2014-04-03
Release date:2014-09-10
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of the 2,4'-dihydroxyacetophenone dioxygenase from Alcaligenes sp. 4HAP
Acta Crystallogr.,Sect.D, 70, 2014
4PGM
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BU of 4pgm by Molmil
SACCHAROMYCES CEREVISIAE PHOSPHOGLYCERATE MUTASE
Descriptor: PHOSPHOGLYCERATE MUTASE 1
Authors:Rigden, D.J, Alexeev, D, Phillips, S.E.V, Fothergill-Gilmore, L.A.
Deposit date:1997-04-25
Release date:1997-10-29
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The 2.3 A X-ray crystal structure of S. cerevisiae phosphoglycerate mutase.
J.Mol.Biol., 276, 1998
4PED
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BU of 4ped by Molmil
Mitochondrial ADCK3 employs an atypical protein kinase-like fold to enable coenzyme Q biosynthes
Descriptor: Chaperone activity of bc1 complex-like, mitochondrial, SULFATE ION
Authors:Bingman, C.A, Smith, R, Joshi, S, Stefely, J.A, Reidenbach, A.G, Ulbrich, A, Oruganty, O, Floyd, B.J, Jochem, A, Saunders, J.M, Johnson, I.E, Wrobel, R.L, Barber, G.E, Lee, D, Li, S, Kannan, N, Coon, J.J, Pagliarini, D.J, Mitochondrial Protein Partnership (MPP)
Deposit date:2014-04-22
Release date:2014-11-19
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Mitochondrial ADCK3 Employs an Atypical Protein Kinase-like Fold to Enable Coenzyme Q Biosynthesis.
Mol.Cell, 57, 2015
4PHN
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The Structural Basis of Differential Inhibition of Human Calpain by Indole and Phenyl alpha-Mercaptoacrylic Acids
Descriptor: CALCIUM ION, Calpain small subunit 1
Authors:Allemann, R.K, Rizkallah, P.J, Adams, S.E, Miller, D.J, Hallett, M.B.
Deposit date:2014-05-06
Release date:2014-08-13
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:The structural basis of differential inhibition of human calpain by indole and phenyl alpha-mercaptoacrylic acids.
J.Struct.Biol., 187, 2014
4PHJ
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The Structural Basis of Differential Inhibition of Human Calpain by Indole and Phenyl alpha-Mercaptoacrylic Acids: Human unliganded protein
Descriptor: CALCIUM ION, Calpain small subunit 1
Authors:Adams, S.E, Rizkallah, P.J, Allemann, R.K, Miller, D.J, Hallett, M.B, Robinson, E.
Deposit date:2014-05-06
Release date:2014-08-13
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The structural basis of differential inhibition of human calpain by indole and phenyl alpha-mercaptoacrylic acids.
J.Struct.Biol., 187, 2014
4POV
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ThiT with LMG135 bound
Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, 4-[(4-amino-2-methylpyrimidin-5-yl)methyl]-3-methylthiophene-2-carbaldehyde, CHLORIDE ION, ...
Authors:Swier, L.J.Y.M, Guskov, A, Slotboom, D.J.
Deposit date:2014-02-26
Release date:2014-09-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure-Based Design of Potent Small-Molecule Binders to the S-Component of the ECF Transporter for Thiamine.
Chembiochem, 16, 2015
4PPS
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Crystal Structure of the Estrogen Receptor alpha Ligand-binding Domain in Complex with an A-CD ring estrogen derivative
Descriptor: (1S,3aR,5R,7aS)-5-(4-hydroxyphenyl)-7a-methyloctahydro-1H-inden-1-ol, Estrogen receptor, Nuclear receptor coactivator 2
Authors:Nwachukwu, J.C, Srinivasan, S, Bruno, N.E, Parent, A.A, Hughes, T.S, Pollock, J.A, Gjyshi, O, Cavett, V, Nowak, J, Garcia-Ordonez, R.D, Houtman, R, Griffin, P.R, Kojetin, D.J, Katzenellenbogen, J.A, Conkright, M.D, Nettles, K.W.
Deposit date:2014-02-27
Release date:2014-05-07
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.929 Å)
Cite:Resveratrol modulates the inflammatory response via an estrogen receptor-signal integration network.
Elife, 3, 2014
4QBQ
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Crystal structure of DNMT3a ADD domain bound to H3 peptide
Descriptor: DNA (cytosine-5)-methyltransferase 3A, Histone H3, ZINC ION
Authors:Li, H, Patel, D.J.
Deposit date:2014-05-08
Release date:2015-05-13
Method:X-RAY DIFFRACTION (2.406 Å)
Cite:Engineering of a histone-recognition domain in a de novo DNA methyltransferase alters the epigenetic landscape of ESCs
To be Published
4QEN
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crystal structure of KRYPTONITE in complex with mCHH DNA and SAH
Descriptor: DNA (5'-D(*AP*CP*TP*GP*AP*TP*GP*AP*GP*TP*AP*CP*CP*AP*T)-3'), DNA (5'-D(*GP*GP*TP*AP*CP*TP*(5CM)P*AP*TP*CP*AP*GP*TP*AP*T)-3'), Histone-lysine N-methyltransferase, ...
Authors:Du, J, Li, S, Patel, D.J.
Deposit date:2014-05-17
Release date:2014-07-30
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.002 Å)
Cite:Mechanism of DNA Methylation-Directed Histone Methylation by KRYPTONITE.
Mol.Cell, 55, 2014
4QEP
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crystal structure of KRYPTONITE in complex with mCHG DNA and SAH
Descriptor: DNA (5'-D(*AP*CP*TP*GP*CP*TP*GP*AP*GP*TP*AP*CP*CP*AP*T)-3'), DNA (5'-D(*GP*GP*TP*AP*CP*TP*(5CM)P*AP*GP*CP*AP*GP*TP*AP*T)-3'), Histone-lysine N-methyltransferase, ...
Authors:Du, J, Li, S, Patel, D.J.
Deposit date:2014-05-17
Release date:2014-07-30
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Mechanism of DNA Methylation-Directed Histone Methylation by KRYPTONITE.
Mol.Cell, 55, 2014

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