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PDB: 22172 results

7LOM
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Ornithine Aminotransferase (OAT) soaked with its inactivator - (1S,3S)-3-amino-4-(difluoromethylene)cyclohexene-1-carboxylic acid
Descriptor: (3~{S},4~{S})-4-methyl-3-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]cyclohexene-1-carboxylic acid, (4~{R})-4-(fluoranylmethyl)-3-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]cyclohexene-1-carboxylic acid, Ornithine aminotransferase, ...
Authors:Butrin, A, Zhu, W, Liu, D, Silverman, R.
Deposit date:2021-02-10
Release date:2021-08-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Remarkable and Unexpected Mechanism for ( S )-3-Amino-4-(difluoromethylenyl)cyclohex-1-ene-1-carboxylic Acid as a Selective Inactivator of Human Ornithine Aminotransferase.
J.Am.Chem.Soc., 143, 2021
7LIV
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Structure of human transfer RNA visualized in the cytomegalovirus, a DNA virus
Descriptor: Major capsid protein, Small capsomere-interacting protein, Tegument protein pp150, ...
Authors:Liu, Y.T, Strugatsky, D, Liu, W, Zhou, Z.H.
Deposit date:2021-01-28
Release date:2021-09-15
Last modified:2021-11-17
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structure of human cytomegalovirus virion reveals host tRNA binding to capsid-associated tegument protein pp150.
Nat Commun, 12, 2021
7M1X
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Cryo-EM Structure of Nucleosome containing mouse histone variant H2A.Z
Descriptor: DNA (136-MER), Histone H2A.Z, Histone H2B 1.1, ...
Authors:Tan, D, Lewis, T.
Deposit date:2021-03-15
Release date:2021-09-29
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural basis of chromatin regulation by histone variant H2A.Z.
Nucleic Acids Res., 49, 2021
7LJ3
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BU of 7lj3 by Molmil
Structure of human transfer RNA visualized in the cytomegalovirus, a DNA virus
Descriptor: RNA (75-MER), Tegument protein pp150
Authors:Liu, Y.T, Strugatsky, D, Liu, W, Zhou, Z.H.
Deposit date:2021-01-28
Release date:2021-11-17
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structure of human cytomegalovirus virion reveals host tRNA binding to capsid-associated tegument protein pp150.
Nat Commun, 12, 2021
7LIA
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BU of 7lia by Molmil
5-HT bound serotonin transporter reconstituted in lipid nanodisc in presence of NaCl in outward facing conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, CHOLESTEROL, ...
Authors:Yang, D, Gouaux, E.
Deposit date:2021-01-26
Release date:2021-12-15
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Illumination of serotonin transporter mechanism and role of the allosteric site.
Sci Adv, 7, 2021
7LI9
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BU of 7li9 by Molmil
5-HT bound serotonin transporter reconstituted in lipid nanodisc in KCl
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, DECANE, ...
Authors:Yang, D, Gouaux, E.
Deposit date:2021-01-26
Release date:2021-12-15
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Illumination of serotonin transporter mechanism and role of the allosteric site.
Sci Adv, 7, 2021
7LI8
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BU of 7li8 by Molmil
apo serotonin transporter reconstituted in lipid nanodisc in presence of NaCl in inward open conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DECANE, DODECANE, ...
Authors:Yang, D, Gouaux, E.
Deposit date:2021-01-26
Release date:2021-12-15
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Illumination of serotonin transporter mechanism and role of the allosteric site.
Sci Adv, 7, 2021
7LI7
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BU of 7li7 by Molmil
apo serotonin transporter reconstituted in lipid nanodisc in presence of NaCl in occluded conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, DECANE, ...
Authors:Yang, D, Gouaux, E.
Deposit date:2021-01-26
Release date:2021-12-15
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Illumination of serotonin transporter mechanism and role of the allosteric site.
Sci Adv, 7, 2021
7M0Q
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BU of 7m0q by Molmil
Crystal structure of deep network hallucinated protein 0738_mod
Descriptor: Network hallucinated protein 0738_mod
Authors:Pellock, S.J, Bera, A.K, Anishchenko, I, Baker, D.
Deposit date:2021-03-11
Release date:2021-12-29
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:De novo protein design by deep network hallucination.
Nature, 600, 2021
7LI6
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BU of 7li6 by Molmil
apo SERT reconstituted in lipid nanodisc in KCl
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, DECANE, ...
Authors:Yang, D, Gouaux, E.
Deposit date:2021-01-26
Release date:2021-12-15
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Illumination of serotonin transporter mechanism and role of the allosteric site.
Sci Adv, 7, 2021
7LA4
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BU of 7la4 by Molmil
Integrin AlphaIIbBeta3-PT25-2 Complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Bush, M.W, Walz, T, Coller, B, Filizola, M, Spasic, A, Nesic, D, Li, J.
Deposit date:2021-01-05
Release date:2022-01-12
Last modified:2022-07-27
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Electron microscopy shows that binding of monoclonal antibody PT25-2 primes integrin alpha IIb beta 3 for ligand binding.
Blood Adv, 5, 2021
7LLL
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BU of 7lll by Molmil
Exendin-4-bound Glucagon-Like Peptide-1 (GLP-1) Receptor in complex with Gs protein
Descriptor: Exendin-4, Glucagon-like peptide 1 receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Wootten, D, Sexton, P.M, Belousoff, M.J, Danev, R, Zhang, X, Khoshouei, M, Venugopal, H.
Deposit date:2021-02-04
Release date:2022-01-12
Last modified:2022-01-26
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Dynamics of GLP-1R peptide agonist engagement are correlated with kinetics of G protein activation.
Nat Commun, 13, 2022
7LLY
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BU of 7lly by Molmil
Oxyntomodulin-bound Glucagon-Like Peptide-1 (GLP-1) Receptor in complex with Gs protein
Descriptor: Glucagon-like peptide 1 receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Wootten, D, Sexton, P.M, Belousoff, M.J, Danev, R, Zhang, X, Khoshouei, M, Venugopal, H.
Deposit date:2021-02-04
Release date:2022-01-12
Last modified:2022-01-26
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Dynamics of GLP-1R peptide agonist engagement are correlated with kinetics of G protein activation.
Nat Commun, 13, 2022
7LIH
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BU of 7lih by Molmil
CryoEM structure of Mayaro virus icosahedral subunit
Descriptor: Capsid protein, E1 protein, E2 protein
Authors:Chmielewski, D, Kaelber, J.T, Jin, J, Weaver, S, Auguste, A.J, Chiu, W.
Deposit date:2021-01-27
Release date:2022-02-09
Last modified:2023-11-01
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Near-atomic resolution Cryo-EM structure of Mayaro virus identifies key structural determinants of alphavirus particle formation
To Be Published
7LK0
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BU of 7lk0 by Molmil
Ornithine Aminotransferase (OAT) cocrystallized with its potent inhibitor - (S)-3-amino-4,4-difluorocyclopent-1-enecarboxylic acid (SS-1-148)
Descriptor: (1R,3S)-3-[(E)-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)amino]-4-oxocyclopentane-1-carboxylic acid, Ornithine aminotransferase, mitochondrial
Authors:Butrin, A, Shen, S, Liu, D, Silverman, R.
Deposit date:2021-02-01
Release date:2022-02-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Turnover and Inactivation Mechanisms for ( S )-3-Amino-4,4-difluorocyclopent-1-enecarboxylic Acid, a Selective Mechanism-Based Inactivator of Human Ornithine Aminotransferase.
J.Am.Chem.Soc., 143, 2021
7LK1
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BU of 7lk1 by Molmil
Ornithine Aminotransferase (OAT) with its potent inhibitor - (S)-3-amino-4,4-difluorocyclopent-1-enecarboxylic acid (SS-1-148) - 1 Hour Soaking
Descriptor: (1R,4R)-4-fluoro-3-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]cyclopent-2-ene-1-carboxylic acid, Ornithine aminotransferase, mitochondrial
Authors:Butrin, A, Shen, S, Liu, D, Silverman, R.
Deposit date:2021-02-01
Release date:2022-02-16
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Turnover and Inactivation Mechanisms for ( S )-3-Amino-4,4-difluorocyclopent-1-enecarboxylic Acid, a Selective Mechanism-Based Inactivator of Human Ornithine Aminotransferase.
J.Am.Chem.Soc., 143, 2021
7LI1
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BU of 7li1 by Molmil
Crystal structure of holo Moraxella catarrhalis ferric binding protein A in an open conformation
Descriptor: CARBONATE ION, FE (III) ION, Fe(3+) ABC transporter substrate-binding protein
Authors:Chan, C, Ng, D, Fraser, M.E, Schryvers, A.B.
Deposit date:2021-01-26
Release date:2022-02-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural and functional insights into iron acquisition from lactoferrin and transferrin in Gram-negative bacterial pathogens.
Biometals, 2022
7LI0
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BU of 7li0 by Molmil
Crystal structure of apo Moraxella catarrhalis ferric binding protein A in an open conformation
Descriptor: CARBONATE ION, CITRIC ACID, DI(HYDROXYETHYL)ETHER, ...
Authors:Chan, C, Ng, D, Fraser, M.E, Schryvers, A.B.
Deposit date:2021-01-26
Release date:2022-02-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural and functional insights into iron acquisition from lactoferrin and transferrin in Gram-negative bacterial pathogens.
Biometals, 2022
7LQA
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BU of 7lqa by Molmil
X-ray radiation damage series on Proteinase K at 277K, multi-conformer model, dataset 2 (merged)
Descriptor: CALCIUM ION, Proteinase K, SULFATE ION
Authors:Yabukarski, F, Doukov, T, Herschlag, D.
Deposit date:2021-02-13
Release date:2022-02-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.02 Å)
Cite:Evaluating the impact of X-ray damage on conformational heterogeneity in room-temperature (277 K) and cryo-cooled protein crystals.
Acta Crystallogr D Struct Biol, 78, 2022
7LK5
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BU of 7lk5 by Molmil
X-ray radiation damage series on Thaumatin at 277K, multi-conformer model, dataset 3
Descriptor: L(+)-TARTARIC ACID, Thaumatin I
Authors:Yabukarski, F, Doukov, T, Herschlag, D.
Deposit date:2021-02-01
Release date:2022-02-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Evaluating the impact of X-ray damage on conformational heterogeneity in room-temperature (277 K) and cryo-cooled protein crystals.
Acta Crystallogr D Struct Biol, 78, 2022
7LND
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BU of 7lnd by Molmil
X-ray radiation damage series on Thaumatin at 277K, multi-conformer model, dataset 4 (merged)
Descriptor: L(+)-TARTARIC ACID, Thaumatin I
Authors:Yabukarski, F, Doukov, T, Herschlag, D.
Deposit date:2021-02-06
Release date:2022-02-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Evaluating the impact of X-ray damage on conformational heterogeneity in room-temperature (277 K) and cryo-cooled protein crystals.
Acta Crystallogr D Struct Biol, 78, 2022
7LPU
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BU of 7lpu by Molmil
X-ray radiation damage series on Proteinase K at 277K, multi-conformer model, dataset 1
Descriptor: CALCIUM ION, Proteinase K, SULFATE ION
Authors:Yabukarski, F, Doukov, T, Herschlag, D.
Deposit date:2021-02-12
Release date:2022-02-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.02 Å)
Cite:Evaluating the impact of X-ray damage on conformational heterogeneity in room-temperature (277 K) and cryo-cooled protein crystals.
Acta Crystallogr D Struct Biol, 78, 2022
7LNC
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BU of 7lnc by Molmil
X-ray radiation damage series on Thaumatin at 277K, multi-conformer model, dataset 3 (merged)
Descriptor: L(+)-TARTARIC ACID, Thaumatin I
Authors:Yabukarski, F, Doukov, T, Herschlag, D.
Deposit date:2021-02-06
Release date:2022-02-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Evaluating the impact of X-ray damage on conformational heterogeneity in room-temperature (277 K) and cryo-cooled protein crystals.
Acta Crystallogr D Struct Biol, 78, 2022
7LN7
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BU of 7ln7 by Molmil
X-ray radiation damage series on Proteinase K at 277K, crystal structure, dataset 1
Descriptor: CALCIUM ION, Proteinase K, SULFATE ION
Authors:Yabukarski, F, Doukov, T, Herschlag, D.
Deposit date:2021-02-06
Release date:2022-02-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.02 Å)
Cite:Evaluating the impact of X-ray damage on conformational heterogeneity in room-temperature (277 K) and cryo-cooled protein crystals.
Acta Crystallogr D Struct Biol, 78, 2022
7LOQ
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X-ray radiation damage series on Lysozyme at 277K, multi-conformer model, dataset 2
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Yabukarski, F, Doukov, T, Herschlag, D.
Deposit date:2021-02-10
Release date:2022-02-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Evaluating the impact of X-ray damage on conformational heterogeneity in room-temperature (277 K) and cryo-cooled protein crystals.
Acta Crystallogr D Struct Biol, 78, 2022

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PDB entries from 2024-07-10

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