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PDB: 53012 results

6QHU
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Time resolved structural analysis of the full turnover of an enzyme - 100 ms
Descriptor: Fluoroacetate dehalogenase, fluoroacetic acid
Authors:Schulz, E.C, Mehrabi, P, Pai, E.F, Miller, D.
Deposit date:2019-01-17
Release date:2019-09-25
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Time-resolved crystallography reveals allosteric communication aligned with molecular breathing.
Science, 365, 2019
6QI1
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Time resolved structural analysis of the full turnover of an enzyme - 12312 ms
Descriptor: Fluoroacetate dehalogenase, fluoroacetic acid
Authors:Schulz, E.C, Mehrabi, P, Pai, E.F, Miller, D.
Deposit date:2019-01-17
Release date:2019-09-25
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Time-resolved crystallography reveals allosteric communication aligned with molecular breathing.
Science, 365, 2019
6QJS
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Crystal structure of a DNA dodecamer containing a tetramethylpiperidinoxyl (nitroxide) spin label
Descriptor: COBALT HEXAMMINE(III), DNA (5'-D(P*GP*CP*AP*AP*AP*TP*TP*(S6M)P*GP*CP*G)-3')
Authors:Hardwick, J.S, Haugland, M.M, Ptchelkine, D, Brown, T, Anderson, E.E.
Deposit date:2019-01-24
Release date:2020-02-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:2'-Alkynyl spin-labelling is a minimally perturbing tool for DNA structural analysis.
Nucleic Acids Res., 48, 2020
8QCI
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BU of 8qci by Molmil
FCGBP D10 Assembly Segment
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, GLYCEROL, ...
Authors:Yeshaya, N, Fass, D.
Deposit date:2023-08-27
Release date:2024-03-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:VWD domain stabilization by autocatalytic Asp-Pro cleavage.
Protein Sci., 33, 2024
6O1U
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BU of 6o1u by Molmil
Cryo-EM structure of TRPV5 W583A in nanodisc
Descriptor: Transient receptor potential cation channel subfamily V member 5
Authors:Dang, S, van Goor, M.K, Asarnow, D, Wang, Y, Julius, D, Cheng, Y, van der Wijst, J.
Deposit date:2019-02-21
Release date:2019-04-24
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structural insight into TRPV5 channel function and modulation.
Proc.Natl.Acad.Sci.USA, 116, 2019
6O1P
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BU of 6o1p by Molmil
Cryo-EM structure of full length TRPV5 in nanodisc
Descriptor: Transient receptor potential cation channel subfamily V member 5
Authors:Dang, S, van Goor, M.K, Asarnow, D, Wang, Y, Julius, D, Cheng, Y, van der Wijst, J.
Deposit date:2019-02-21
Release date:2019-04-24
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural insight into TRPV5 channel function and modulation.
Proc.Natl.Acad.Sci.USA, 116, 2019
6QLF
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BU of 6qlf by Molmil
Structure of inner kinetochore CCAN complex with mask1
Descriptor: Inner kinetochore subunit AME1, Inner kinetochore subunit CHL4, Inner kinetochore subunit CTF19, ...
Authors:Yan, K, Yang, J, Zhang, Z, McLaughlin, S.H, Chang, L, Fasci, D, Heck, A.J.R, Barford, D.
Deposit date:2019-01-31
Release date:2019-10-02
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.45 Å)
Cite:Structure of the inner kinetochore CCAN complex assembled onto a centromeric nucleosome.
Nature, 574, 2019
5JLI
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BU of 5jli by Molmil
Nitric oxide complex of the L16A mutant of cytochrome c prime from Alcaligenes xylosoxidans
Descriptor: ASCORBIC ACID, Cytochrome c', HEME C, ...
Authors:Kekilli, D, Strange, R.W, Hough, M.A.
Deposit date:2016-04-27
Release date:2017-03-08
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Engineering proximal vs. distal heme-NO coordination via dinitrosyl dynamics: implications for NO sensor design.
Chem Sci, 8, 2017
6QHQ
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Time resolved structural analysis of the full turnover of an enzyme - 1128 ms
Descriptor: Fluoroacetate dehalogenase, fluoroacetic acid
Authors:Schulz, E.C, Mehrabi, P, Pai, E.F, Miller, D.
Deposit date:2019-01-17
Release date:2019-09-25
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.735 Å)
Cite:Time-resolved crystallography reveals allosteric communication aligned with molecular breathing.
Science, 365, 2019
6O2V
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BU of 6o2v by Molmil
Crystal structure of the SARAF luminal domain Cys-lock mutant monomer
Descriptor: FORMIC ACID, GLYCEROL, Store-operated calcium entry-associated regulatory factor
Authors:Kimberlin, C.R, Minor, D.L.
Deposit date:2019-02-24
Release date:2019-05-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:SARAF Luminal Domain Structure Reveals a Novel Domain-Swapped beta-Sandwich Fold Important for SOCE Modulation.
J.Mol.Biol., 431, 2019
6QHW
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Time resolved structural analysis of the full turnover of an enzyme - 4512 ms
Descriptor: Fluoroacetate dehalogenase, GLYCOLIC ACID, fluoroacetic acid
Authors:Schulz, E.C, Mehrabi, P, Pai, E.F, Miller, D.
Deposit date:2019-01-17
Release date:2019-09-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.718 Å)
Cite:Time-resolved crystallography reveals allosteric communication aligned with molecular breathing.
Science, 365, 2019
8PNR
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BU of 8pnr by Molmil
Structure of human KCTD15 BTB domain mutant G88D crystal form 1
Descriptor: BTB/POZ domain-containing protein KCTD15
Authors:Cruz Walma, D.A, Cros, J, Bradshaw, W, Richardson, W, Chen, Z, Chalk, R, Wilkie, A, Bullock, A.N.
Deposit date:2023-06-30
Release date:2024-03-20
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:BTB domain mutations perturbing KCTD15 oligomerisation cause a distinctive frontonasal dysplasia syndrome.
J Med Genet, 61, 2024
6CK9
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Crystal Structure of HIV-1 ConC_Base0 Prefusion Env Trimer in Complex with Human Antibody Fragment 3H109L and 35O22 variants at 3.5 Angstrom
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Lai, Y.-T, Kwong, P.D.
Deposit date:2018-02-27
Release date:2018-04-25
Last modified:2022-03-23
Method:X-RAY DIFFRACTION (2.714 Å)
Cite:A Universal Approach to Optimize the Folding and Stability of Prefusion-Closed HIV-1 Envelope Trimers.
Cell Rep, 23, 2018
6NZN
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BU of 6nzn by Molmil
Dimer-of-dimer amyloid fibril structure of glucagon
Descriptor: Glucagon
Authors:Gelenter, M.D, Smith, K.J, Liao, S.Y, Mandala, V.S, Dregni, A.J, Lamm, M.S, Tian, Y, Wei, X, Pochan, D.J, Tucker, T.J, Su, Y, Hong, M.
Deposit date:2019-02-14
Release date:2019-06-05
Last modified:2024-05-15
Method:SOLID-STATE NMR
Cite:The peptide hormone glucagon forms amyloid fibrils with two coexisting beta-strand conformations.
Nat.Struct.Mol.Biol., 26, 2019
6Q5V
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BU of 6q5v by Molmil
1-Cys SiPrx, a Prx6-family 1-Cys peroxiredoxin of the thermoacidophilic archaeon Sulfolobus islandicus
Descriptor: Peroxiredoxin
Authors:Stroobants, S, Maes, D, Peeters, E, van Molle, I.
Deposit date:2018-12-09
Release date:2019-05-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.747 Å)
Cite:Structure of the Prx6-subfamily 1-Cys peroxiredoxin from Sulfolobus islandicus.
Acta Crystallogr.,Sect.F, 75, 2019
6W05
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BU of 6w05 by Molmil
Crystal structure of Fab356 in complex with NPNA2 peptide from circumsporozoite protein
Descriptor: Fab356 heavy chain, Fab356 light chain, NPNA2 peptide
Authors:Pholcharee, T, Oyen, D, Wilson, I.A.
Deposit date:2020-02-29
Release date:2020-07-29
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.516 Å)
Cite:Structural and biophysical correlation of anti-NANP antibodies with in vivo protection against P. falciparum.
Nat Commun, 12, 2021
8GPW
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BU of 8gpw by Molmil
Structure of Penicillin-binding protein 3 (PBP3) from Klebsiella pneumoniae with ligand 18G
Descriptor: 1-[(~{Z})-[1-(2-azanyl-1,3-thiazol-4-yl)-2-[[(2~{S})-3-methyl-1-oxidanylidene-3-(sulfooxyamino)butan-2-yl]amino]-2-oxidanylidene-ethylidene]amino]oxycyclopropane-1-carboxylic acid, Peptidoglycan D,D-transpeptidase FtsI
Authors:Song, D.Q, Li, Y.H.
Deposit date:2022-08-27
Release date:2022-11-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Structure of Penicillin-binding protein 3 (PBP3) from Klebsiella pneumoniae with ligand 18G at 2.06 Angstroms resolution
To Be Published
7P2F
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BU of 7p2f by Molmil
Green-type copper-nitrite reductase from Sinorhizobium meliloti 2011
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase
Authors:Tolmie, C, Opperman, D.J, Ferroni, F.M.
Deposit date:2021-07-05
Release date:2021-10-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Copper nitrite reductase from Sinorhizobium meliloti 2011: Crystal structure and interaction with the physiological versus a nonmetabolically related cupredoxin-like mediator.
Protein Sci., 30, 2021
6O4Z
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BU of 6o4z by Molmil
Structure of HLA-A2:01 with peptide MM92
Descriptor: Beta-2-microglobulin, GLYCEROL, MHC class I antigen, ...
Authors:Ying, G, Bitra, A, Zajonc, D.M.
Deposit date:2019-03-01
Release date:2020-01-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Anin silico-in vitroPipeline Identifying an HLA-A*02:01+KRAS G12V+Spliced Epitope Candidate for a Broad Tumor-Immune Response in Cancer Patients.
Front Immunol, 10, 2019
6O51
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BU of 6o51 by Molmil
Structure of HLA-A2:01 with peptide MM90
Descriptor: Beta-2-microglobulin, GLYCEROL, MHC class I antigen, ...
Authors:Ying, G, Bitra, A, Zajonc, D.M.
Deposit date:2019-03-01
Release date:2020-01-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Anin silico-in vitroPipeline Identifying an HLA-A*02:01+KRAS G12V+Spliced Epitope Candidate for a Broad Tumor-Immune Response in Cancer Patients.
Front Immunol, 10, 2019
6O4E
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BU of 6o4e by Molmil
Structure of ALDH7A1 mutant N167S complexed with NAD
Descriptor: Alpha-aminoadipic semialdehyde dehydrogenase, HEXAETHYLENE GLYCOL, MAGNESIUM ION, ...
Authors:Tanner, J.J, Korasick, D.A, Laciak, A.R.
Deposit date:2019-02-28
Release date:2019-07-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural and biochemical consequences of pyridoxine-dependent epilepsy mutations that target the aldehyde binding site of aldehyde dehydrogenase ALDH7A1.
Febs J., 287, 2020
7Z58
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BU of 7z58 by Molmil
Crystal structure of human Cathepsin L in complex with covalently bound Calpeptin
Descriptor: 1,2-ETHANEDIOL, Calpeptin, Cathepsin L, ...
Authors:Reinke, P.Y.A, Falke, S, Lieske, J, Ewert, W, Loboda, J, Rahmani Mashhour, A, Hauser, M, Karnicar, K, Usenik, A, Lindic, N, Lach, M, Boehler, H, Beck, T, Cox, R, Chapman, H.N, Hinrichs, W, Turk, D, Guenther, S, Meents, A.
Deposit date:2022-03-08
Release date:2023-03-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Calpeptin is a potent cathepsin inhibitor and drug candidate for SARS-CoV-2 infections.
Commun Biol, 6, 2023
6O71
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BU of 6o71 by Molmil
Crystal structure of Csm6 in complex with cdA4 by soaking cdA4 into Csm6
Descriptor: Csm6, Cyclic DNA cdA4
Authors:Jia, N, Patel, D.J.
Deposit date:2019-03-07
Release date:2019-07-31
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:CRISPR-Cas III-A Csm6 CARF Domain Is a Ring Nuclease Triggering Stepwise cA4Cleavage with ApA>p Formation Terminating RNase Activity.
Mol.Cell, 75, 2019
6QHY
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BU of 6qhy by Molmil
Time resolved structural analysis of the full turnover of an enzyme - 100 ms
Descriptor: Fluoroacetate dehalogenase, fluoroacetic acid
Authors:Schulz, E.C, Mehrabi, P, Pai, E.F, Miller, D.
Deposit date:2019-01-17
Release date:2019-09-25
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.698 Å)
Cite:Time-resolved crystallography reveals allosteric communication aligned with molecular breathing.
Science, 365, 2019
5ESZ
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BU of 5esz by Molmil
Crystal Structure of Broadly Neutralizing Antibody CH04, Isolated from Donor CH0219, in Complex with Scaffolded Trimeric HIV-1 Env V1V2 Domain from the Clade AE Strain A244
Descriptor: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase,Envelope glycoprotein gp160, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CH04 Heavy Chain, ...
Authors:Gorman, J, Yang, M, Kwong, P.D.
Deposit date:2015-11-17
Release date:2015-12-16
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (4.191 Å)
Cite:Structures of HIV-1 Env V1V2 with broadly neutralizing antibodies reveal commonalities that enable vaccine design.
Nat. Struct. Mol. Biol., 23, 2016

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