Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 53526 件

5VGJ
DownloadVisualize
BU of 5vgj by Molmil
Crystal Structure of the Human Fab VRC38.01, an HIV-1 V1V2-Directed Neutralizing Antibody Isolated from Donor N90, bound to a scaffolded WITO V1V2 domain
分子名称: 1FD6-V1V2-WITO, 2-acetamido-2-deoxy-beta-D-glucopyranose, VRC38.01 Fab Heavy Chain, ...
著者Gorman, J, Li, J, Kwong, P.D.
登録日2017-04-11
公開日2017-05-31
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.456 Å)
主引用文献Virus-like Particles Identify an HIV V1V2 Apex-Binding Neutralizing Antibody that Lacks a Protruding Loop.
Immunity, 46, 2017
7UL1
DownloadVisualize
BU of 7ul1 by Molmil
Crystal structure of SARS-CoV-2 RBD in complex with the neutralizing IGHV3-53-encoded antibody EH3 isolated from a nonvaccinated pediatric patient
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of EH3, Light chain of EH3, ...
著者Chen, Y, Tolbert, W.D, Pazgier, M.
登録日2022-04-03
公開日2023-03-08
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Molecular basis for antiviral activity of two pediatric neutralizing antibodies targeting SARS-CoV-2 Spike RBD.
Iscience, 26, 2023
7UL0
DownloadVisualize
BU of 7ul0 by Molmil
Crystal structure of SARS-CoV-2 RBD in complex with the ridge-binding nAb EH8 isolated from a nonvaccinated pediatric patient
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of EH8, ...
著者Chen, Y, Tolbert, W.D, Bai, X, Pazgier, M.
登録日2022-04-03
公開日2023-03-08
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Molecular basis for antiviral activity of two pediatric neutralizing antibodies targeting SARS-CoV-2 Spike RBD.
Iscience, 26, 2023
1A6A
DownloadVisualize
BU of 1a6a by Molmil
THE STRUCTURE OF AN INTERMEDIATE IN CLASS II MHC MATURATION: CLIP BOUND TO HLA-DR3
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, HLA class II histocompatibility antigen, DR alpha chain, ...
著者Ghosh, P, Amaya, M, Mellins, E, Wiley, D.C.
登録日1998-02-22
公開日1998-05-27
最終更新日2023-08-02
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献The structure of an intermediate in class II MHC maturation: CLIP bound to HLA-DR3.
Nature, 378, 1995
6FV4
DownloadVisualize
BU of 6fv4 by Molmil
The structure of N-acetyl-D-glucosamine-6-phosphate deacetylase D267A mutant from Mycobacterium smegmatis in complex with N-acetyl-D-glucosamine-6-phosphate
分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-glucopyranose, CADMIUM ION, ...
著者Ahangar, M.S, Furze, C.M, Guy, C.S, Cooper, C, Maskew, K.S, Graham, B, Cameron, A.D, Fullam, E.
登録日2018-03-01
公開日2018-05-16
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.974 Å)
主引用文献Structural and functional determination of homologs of theMycobacterium tuberculosis N-acetylglucosamine-6-phosphate deacetylase (NagA).
J. Biol. Chem., 293, 2018
6WS4
DownloadVisualize
BU of 6ws4 by Molmil
Crystal structure of KRAS-G12D/K104Q mutant, GDP-bound
分子名称: 3,3',3''-phosphanetriyltripropanoic acid, GTPase KRas, GUANOSINE-5'-DIPHOSPHATE, ...
著者Tran, T.H, Simanshu, D.K.
登録日2020-04-30
公開日2021-11-10
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Allosteric regulation of switch-II domain controls KRAS oncogenicity.
Cancer Res., 2023
6WS2
DownloadVisualize
BU of 6ws2 by Molmil
Crystal structure of KRAS-K104Q mutant, GDP-bound
分子名称: CHLORIDE ION, GTPase KRas, GUANOSINE-5'-DIPHOSPHATE, ...
著者Tran, T.H, Simanshu, D.K.
登録日2020-04-30
公開日2021-11-10
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献Allosteric regulation of switch-II domain controls KRAS oncogenicity.
Cancer Res., 2023
6G31
DownloadVisualize
BU of 6g31 by Molmil
Crystal structure of human geranylgeranyl diphosphate synthase mutant D188Y bound to zoledronate
分子名称: Geranylgeranyl pyrophosphate synthase, MAGNESIUM ION, ZOLEDRONIC ACID
著者Lisnyansky, M, Kapelushnik, N, Ben-Bassat, A, Marom, M, Loewenstein, A, Khananshvili, D, Giladi, M, Haitin, Y.
登録日2018-03-24
公開日2018-10-17
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Reduced Activity of Geranylgeranyl Diphosphate Synthase Mutant Is Involved in Bisphosphonate-Induced Atypical Fractures.
Mol. Pharmacol., 94, 2018
6X45
DownloadVisualize
BU of 6x45 by Molmil
SARS-CoV2 spike glycoprotein N-terminal heptad repeat domain + SARS-CoV2(QEYKKEKE)
分子名称: Spike protein S2'
著者Kreitler, D.F, Outlaw, V.K, Gellman, S.H.
登録日2020-05-22
公開日2021-11-24
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Engineered peptides potently block entry of SARS-CoV-2 into human airway cells
To Be Published
6TK2
DownloadVisualize
BU of 6tk2 by Molmil
Femtosecond to millisecond structural changes in a light-driven sodium pump: 1ms structure of KR2 with extrapolated, light and dark datasets
分子名称: EICOSANE, RETINAL, SODIUM ION, ...
著者Skopintsev, P, Ehrenberg, D, Weinert, T, James, D, Kar, R, Johnson, P, Ozerov, D, Furrer, A, Martiel, I, Dworkowski, F, Nass, K, Knopp, G, Cirelli, C, Gashi, D, Mous, S, Wranik, M, Gruhl, T, Kekilli, D, Bruenle, S, Deupi, X, Schertler, G.F.X, Benoit, R, Panneels, V, Nogly, P, Schapiro, I, Milne, C, Heberle, J, Standfuss, J.
登録日2019-11-28
公開日2020-05-27
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Femtosecond-to-millisecond structural changes in a light-driven sodium pump.
Nature, 583, 2020
8CMT
DownloadVisualize
BU of 8cmt by Molmil
Structure of the plasma coagulation Factor XIII A2B2 heterotetrameric complex.
分子名称: Coagulation factor XIII A chain, Coagulation factor XIII B chain
著者Singh, S, Ugurlar, D, Hagelueken, G, Geyer, M, Biswas, A.
登録日2023-02-21
公開日2024-09-11
実験手法ELECTRON MICROSCOPY (3.04 Å)
主引用文献The cryo-EM structure of plasma coagulation Factor XIII heterotetrameric complex at 2.68 Angstrom resolution.
To Be Published
5YZD
DownloadVisualize
BU of 5yzd by Molmil
Crystal structure of the prefusion form of measles virus fusion protein in complex with a fusion inhibitor peptide (FIP)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, glycoprotein F1,measles virus fusion protein, ...
著者Hashiguchi, T, Fukuda, Y, Matsuoka, R, Kuroda, D, Kubota, M, Shirogane, Y, Watanabe, S, Tsumoto, K, Kohda, D, Plemper, R.K, Yanagi, Y.
登録日2017-12-14
公開日2018-02-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.636 Å)
主引用文献Structures of the prefusion form of measles virus fusion protein in complex with inhibitors.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6BJV
DownloadVisualize
BU of 6bjv by Molmil
CIRV p19 protein in complex with siRNA
分子名称: RNA (5'-R(P*CP*GP*UP*AP*CP*GP*CP*GP*GP*AP*AP*UP*AP*CP*UP*UP*CP*GP*AP*UP*U)-3'), RNA (5'-R(P*UP*CP*GP*AP*AP*GP*UP*AP*UP*UP*CP*CP*GP*CP*GP*UP*AP*CP*GP*UP*U)-3'), RNA silencing suppressor p19
著者Foss, D.V, Schirle, N, Pezacki, J.P, Macrae, I.J.
登録日2017-11-07
公開日2019-01-16
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.198 Å)
主引用文献Structural insights into interactions between viral suppressor of RNA silencing protein p19 mutants and small RNAs.
Febs Open Bio, 9, 2019
5CSU
DownloadVisualize
BU of 5csu by Molmil
Disproportionating enzyme 1 from Arabidopsis - acarviostatin soak
分子名称: 1,2-ETHANEDIOL, 4-alpha-glucanotransferase DPE1, chloroplastic/amyloplastic, ...
著者O'Neill, E.C, Stevenson, C.E.M, Tantanarat, K, Latousakis, D, Donaldson, M.I, Rejzek, M, Limpaseni, T, Smith, A.M, Field, R.A, Lawson, D.M.
登録日2015-07-23
公開日2015-11-04
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.53 Å)
主引用文献Structural Dissection of the Maltodextrin Disproportionation Cycle of the Arabidopsis Plastidial Disproportionating Enzyme 1 (DPE1).
J.Biol.Chem., 290, 2015
6W4K
DownloadVisualize
BU of 6w4k by Molmil
Crystal structure of Lysine Specific Demethylase 1 (LSD1) with CC-90011
分子名称: 4-[2-(4-aminopiperidin-1-yl)-5-(3-fluoro-4-methoxyphenyl)-1-methyl-6-oxo-1,6-dihydropyrimidin-4-yl]-2-fluorobenzonitrile, FLAVIN-ADENINE DINUCLEOTIDE, Lysine-specific histone demethylase 1A, ...
著者Hosfield, D.J.
登録日2020-03-11
公開日2020-10-21
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.93 Å)
主引用文献Discovery of CC-90011: A Potent and Selective Reversible Inhibitor of Lysine Specific Demethylase 1 (LSD1).
J.Med.Chem., 63, 2020
8DFC
DownloadVisualize
BU of 8dfc by Molmil
CryoEM structure of the 1:1 ADP-tetrafluoroaluminate stabilized nitrogenase complex from Azotobacter vinelandii
分子名称: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, ADENOSINE-5'-DIPHOSPHATE, FE (III) ION, ...
著者Warmack, R.A, Rees, D.C.
登録日2022-06-21
公開日2023-06-28
最終更新日2024-04-17
実験手法ELECTRON MICROSCOPY (2.48 Å)
主引用文献Anaerobic cryoEM protocols for air-sensitive nitrogenase proteins.
Nat Protoc, 2024
6C97
DownloadVisualize
BU of 6c97 by Molmil
Crystal structure of FcRn at pH3
分子名称: Beta-2-microglobulin, GLYCEROL, IgG receptor FcRn large subunit p51
著者Fox III, D, Fairman, J.W.
登録日2018-01-25
公開日2018-05-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Insight into small molecule binding to the neonatal Fc receptor by X-ray crystallography and 100 kHz magic-angle-spinning NMR.
PLoS Biol., 16, 2018
7ZX4
DownloadVisualize
BU of 7zx4 by Molmil
Clathrin N-terminal domain in complex with a HURP phospho-peptide
分子名称: CHLORIDE ION, Clathrin heavy chain 1, Disks large-associated protein 5, ...
著者Kliche, J, Badgujar, D, Dobritzsch, D, Ivarsson, Y.
登録日2022-05-20
公開日2023-03-29
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Large-scale phosphomimetic screening identifies phospho-modulated motif-based protein interactions.
Mol.Syst.Biol., 19, 2023
6WRL
DownloadVisualize
BU of 6wrl by Molmil
The interaction of chlorido(1,5-cyclooctadiene)([4-(2-((tert-butoxycarbonyl)amino)-3-methoxy-3-oxopropyl)-1,3-dimethyl-1H-imidazol-3-ide])rhodium(I) with HEWL after 1 week
分子名称: ACETATE ION, Lysozyme, Rhodium, ...
著者Sullivan, M.P, John, M, Hartinger, C.G, Goldstone, D.C.
登録日2020-04-29
公開日2020-12-16
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献A Combined Spectroscopic and Protein Crystallography Study Reveals Protein Interactions of Rh I (NHC) Complexes at the Molecular Level.
Inorg.Chem., 59, 2020
8CTM
DownloadVisualize
BU of 8ctm by Molmil
Crystal structure of the nucleoside hydrolase from Leishmania donovani.
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, CHLORIDE ION, ...
著者Chen, Y, Tolbert, W.D, Pazgier, M.
登録日2022-05-16
公開日2023-06-28
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Crystal structure of the nucleoside hydrolase from Leishmania donovani.
To Be Published
8DFD
DownloadVisualize
BU of 8dfd by Molmil
CryoEM structure of the 2:1 ADP-tetrafluoroaluminate stabilized nitrogenase complex from Azotobacter vinelandii
分子名称: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, ADENOSINE-5'-DIPHOSPHATE, FE (III) ION, ...
著者Warmack, R.A, Rees, D.C.
登録日2022-06-21
公開日2023-06-28
最終更新日2024-04-17
実験手法ELECTRON MICROSCOPY (2.12 Å)
主引用文献Anaerobic cryoEM protocols for air-sensitive nitrogenase proteins.
Nat Protoc, 2024
6XFK
DownloadVisualize
BU of 6xfk by Molmil
Crystal structure of the type III secretion system pilotin-secretin complex InvH-InvG
分子名称: SULFATE ION, Type 3 secretion system pilotin, Type 3 secretion system secretin
著者Majewski, D.D, Okon, M, Heinkel, F, Robb, C.S, Vuckovic, M, McIntosh, L.P, Strynadka, N.C.J.
登録日2020-06-15
公開日2020-09-16
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Characterization of the Pilotin-Secretin Complex from the Salmonella enterica Type III Secretion System Using Hybrid Structural Methods.
Structure, 29, 2021
5NYV
DownloadVisualize
BU of 5nyv by Molmil
Crystal structure determination from picosecond infrared laser ablated protein crystals by serial synchrotron crystallography
分子名称: Fluoroacetate dehalogenase
著者Schulz, E.C, Kaub, J, Busse, F, Mehrabi, P, Mueller-Werkmeiser, H, Pai, E.F, Robertson, W.D, Miller, R.J.D.
登録日2017-05-11
公開日2018-03-21
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Protein crystals IR laser ablated from aqueous solution at high speed retain their diffractive properties: applications in high-speed serial crystallography.
J.Appl.Crystallogr., 50, 2017
7MUC
DownloadVisualize
BU of 7muc by Molmil
Legionella pneumophila Dot/Icm T4SS C1 Reconstruction
分子名称: DUF2807 domain-containing protein, DotC, DotD, ...
著者Sheedlo, M.J, Durie, C.L, Swanson, M, Lacy, D.B, Ohi, M.D.
登録日2021-05-14
公開日2021-10-06
最終更新日2022-04-20
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Cryo-EM reveals new species-specific proteins and symmetry elements in the Legionella pneumophila Dot/Icm T4SS.
Elife, 10, 2021
5O2C
DownloadVisualize
BU of 5o2c by Molmil
Crystal structure of WNK3 kinase and CCT1 didomain in a unphosphorylated state
分子名称: DI(HYDROXYETHYL)ETHER, GLYCEROL, Serine/threonine-protein kinase WNK3
著者Bartual, S.G, Pinkas, D.M, Bufton, J.C, Kupinska, K, Wang, D, Chalk, R, Berridge, G, Burgess-Brown, N.A, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Bullock, A, Structural Genomics Consortium (SGC)
登録日2017-05-19
公開日2017-06-28
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of WNK3 kinase and CCT1 didomain in a unphosphorylated state
To Be Published

225946

件を2024-10-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon