Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 53266 件

4V19
DownloadVisualize
BU of 4v19 by Molmil
Structure of the large subunit of the mammalian mitoribosome, part 1 of 2
分子名称: MAGNESIUM ION, MITORIBOSOMAL 16S RRNA, MITORIBOSOMAL CP TRNA, ...
著者Greber, B.J, Boehringer, D, Leibundgut, M, Bieri, P, Leitner, A, Schmitz, N, Aebersold, R, Ban, N.
登録日2014-09-25
公開日2014-10-08
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献The Complete Structure of the Large Subunit of the Mammalian Mitochondrial Ribosome
Nature, 515, 2014
2FOM
DownloadVisualize
BU of 2fom by Molmil
Dengue Virus NS2B/NS3 Protease
分子名称: CHLORIDE ION, GLYCEROL, polyprotein
著者Schiering, N, Kroemer, M, Renatus, M, Erbel, P, D'Arcy, A.
登録日2006-01-13
公開日2006-03-07
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural basis for the activation of flaviviral NS3 proteases from dengue and West Nile virus.
Nat.Struct.Mol.Biol., 13, 2006
4V8W
DownloadVisualize
BU of 4v8w by Molmil
Structure and conformational variability of the Mycobacterium tuberculosis fatty acid synthase multienzyme complex
分子名称: FLAVIN MONONUCLEOTIDE, TYPE-I FATTY ACID SYNTHASE
著者Ciccarelli, L, Connell, S.R, Enderle, M, Mills, D.J, Vonck, J, Grininger, M.
登録日2013-04-18
公開日2014-07-09
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (17.5 Å)
主引用文献Structure and Conformational Variability of the Mycobacterium Tuberculosis Fatty Acid Synthase Multienzyme Complex.
Structure, 21, 2013
7RQZ
DownloadVisualize
BU of 7rqz by Molmil
Cryo-EM structure of the full-length TRPV1 with RTx at 48 degrees Celsius, in an open state, class alpha
分子名称: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, Transient receptor potential cation channel subfamily V member 1, [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate, ...
著者Kwon, D.H, Suo, Y, Lee, S.-Y.
登録日2021-08-08
公開日2022-06-01
実験手法ELECTRON MICROSCOPY (3.32 Å)
主引用文献Vanilloid-dependent TRPV1 opening trajectory from cryoEM ensemble analysis.
Nat Commun, 13, 2022
7RQX
DownloadVisualize
BU of 7rqx by Molmil
Cryo-EM structure of the full-length TRPV1 with RTx at 25 degrees Celsius, in an intermediate-open state, class A
分子名称: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, SODIUM ION, Transient receptor potential cation channel subfamily V member 1, ...
著者Kwon, D.H, Suo, Y, Lee, S.-Y.
登録日2021-08-08
公開日2022-06-01
実験手法ELECTRON MICROSCOPY (3.36 Å)
主引用文献Vanilloid-dependent TRPV1 opening trajectory from cryoEM ensemble analysis.
Nat Commun, 13, 2022
4FEL
DownloadVisualize
BU of 4fel by Molmil
Crystal structure of the U25A/A46G mutant of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine
分子名称: ACETATE ION, COBALT HEXAMMINE(III), HYPOXANTHINE, ...
著者Stoddard, C.D, Trausch, J.J, Widmann, J, Marcano, J, Knight, R, Batey, R.T.
登録日2012-05-30
公開日2013-02-27
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Nucleotides Adjacent to the Ligand-Binding Pocket are Linked to Activity Tuning in the Purine Riboswitch.
J.Mol.Biol., 425, 2013
7RQW
DownloadVisualize
BU of 7rqw by Molmil
Cryo-EM structure of the full-length TRPV1 with RTx at 4 degrees Celsius, in an open state, class III
分子名称: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, Transient receptor potential cation channel subfamily V member 1, ...
著者Kwon, D.H, Suo, Y, Lee, S.-Y.
登録日2021-08-08
公開日2022-06-01
実験手法ELECTRON MICROSCOPY (3.11 Å)
主引用文献Vanilloid-dependent TRPV1 opening trajectory from cryoEM ensemble analysis.
Nat Commun, 13, 2022
4V5Y
DownloadVisualize
BU of 4v5y by Molmil
Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Borovinskaya, M.A, Pai, R.D, Zhang, W, Schuwirth, B.-S, Holton, J.M, Hirokawa, G, Kaji, H, Kaji, A, Cate, J.H.D.
登録日2007-06-19
公開日2014-07-09
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (4.45 Å)
主引用文献Structural basis for aminoglycoside inhibition of bacterial ribosome recycling.
Nat.Struct.Mol.Biol., 14, 2007
6KOY
DownloadVisualize
BU of 6koy by Molmil
Crystal structure of two domain M1 Zinc metallopeptidase E323A mutant bound to L-tryptophan amino acid
分子名称: TRYPTOPHAN, ZINC ION, Zinc metalloprotease
著者Agrawal, R, Kumar, A, Kumar, A, Makde, R.D.
登録日2019-08-13
公開日2020-01-22
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structural basis for the unusual substrate specificity of unique two-domain M1 metallopeptidase.
Int.J.Biol.Macromol., 147, 2020
5KW4
DownloadVisualize
BU of 5kw4 by Molmil
T. danielli thaumatin at 278K, Data set 2
分子名称: L(+)-TARTARIC ACID, Thaumatin-1
著者Russi, S, Gonzalez, A, Kenner, L.R, Keedy, D.A, Fraser, J.S.
登録日2016-07-15
公開日2016-08-10
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Conformational variation of proteins at room temperature is not dominated by radiation damage.
J Synchrotron Radiat, 24, 2017
2FUV
DownloadVisualize
BU of 2fuv by Molmil
Phosphoglucomutase from Salmonella typhimurium.
分子名称: MAGNESIUM ION, phosphoglucomutase
著者Osipiuk, J, Wu, R, Holzle, D, Collart, F, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
登録日2006-01-27
公開日2006-03-07
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献X-ray crystal structure of phosphoglucomutase from Salmonella typhimurium.
To be Published
4UU1
DownloadVisualize
BU of 4uu1 by Molmil
CRYSTAL STRUCTURE OF (SR) CALCIUM-ATPASE E2(TG) IN THE PRESENCE OF DOPC
分子名称: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, GLYCEROL, MAGNESIUM ION, ...
著者Drachmann, N.D, Olesen, C, Moeller, J.V, Guo, Z, Nissen, P, Bublitz, M.
登録日2014-07-24
公開日2014-10-01
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Comparing Crystal Structures of Ca(2+) -ATPase in the Presence of Different Lipids.
FEBS J., 281, 2014
8STN
DownloadVisualize
BU of 8stn by Molmil
Crystal structure of KRAS-G12D/G75A mutant, GDP-bound
分子名称: CHLORIDE ION, GTPase KRas, GUANOSINE-5'-DIPHOSPHATE, ...
著者Tran, T.H, Dharmaiah, S, Simanshu, D.K.
登録日2023-05-10
公開日2023-08-23
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Allosteric Regulation of Switch-II Domain Controls KRAS Oncogenicity.
Cancer Res., 83, 2023
5KW8
DownloadVisualize
BU of 5kw8 by Molmil
T. danielli thaumatin at 278K, Data set 5
分子名称: L(+)-TARTARIC ACID, Thaumatin-1
著者Russi, S, Gonzalez, A, Kenner, L.R, Keedy, D.A, Fraser, J.S.
登録日2016-07-15
公開日2016-08-17
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Conformational variation of proteins at room temperature is not dominated by radiation damage.
J Synchrotron Radiat, 24, 2017
4V2Q
DownloadVisualize
BU of 4v2q by Molmil
Ironing out their differences: Dissecting the structural determinants of a phenylalanine aminomutase and ammonia lyase
分子名称: PHENYLALANINE AMMONIA-LYASE
著者Heberling, M, Masman, M, Bartsch, S, Wybenga, G.G, Dijkstra, B.W, Marrink, S, Janssen, D.
登録日2014-10-14
公開日2014-12-10
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Ironing Out Their Differences: Dissecting the Structural Determinants of a Phenylalanine Aminomutase and Ammonia Lyase.
Acs Chem.Biol., 10, 2015
4FCG
DownloadVisualize
BU of 4fcg by Molmil
Structure of the leucine-rich repeat domain of the type III effector XCV3220 (XopL)
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, PHOSPHATE ION, ...
著者Singer, A.U, Xu, X, Cui, H, Zimmerman, M.D, Minor, W, Joachimiak, A, Savchenko, A, Midwest Center for Structural Genomics (MCSG)
登録日2012-05-24
公開日2012-06-13
最終更新日2022-04-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of the leucine-rich repeat domain of the type III effector XCV3220 (XopL)
To be Published
4V53
DownloadVisualize
BU of 4v53 by Molmil
Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.
分子名称: (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDR OXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL, 16S rRNA, 23S rRNA, ...
著者Borovinskaya, M.A, Pai, R.D, Zhang, W, Schuwirth, B.-S, Holton, J.M, Hirokawa, G, Kaji, H, Kaji, A, Cate, J.H.D.
登録日2007-06-16
公開日2014-07-09
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.54 Å)
主引用文献Structural basis for aminoglycoside inhibition of bacterial ribosome recycling.
Nat.Struct.Mol.Biol., 14, 2007
2FN4
DownloadVisualize
BU of 2fn4 by Molmil
The crystal structure of human Ras-related protein, RRAS, in the GDP-bound state
分子名称: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Ras-related protein R-Ras
著者Turnbull, A.P, Elkins, J.M, Gileadi, C, Burgess, N, Salah, E, Papagrigoriou, E, Debreczeni, J, von Delft, F, Weigelt, J, Edwards, A, Arrowsmith, C, Sundstrom, M, Doyle, D, Structural Genomics Consortium (SGC)
登録日2006-01-10
公開日2006-01-31
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献The crystal structure of human Ras-related protein, RRAS, in the GDP-bound state
To be Published
5KZL
DownloadVisualize
BU of 5kzl by Molmil
Structure of Heme Oxygenase from Leptospira interrogans
分子名称: Heme oxygenase, PROTOPORPHYRIN IX CONTAINING FE
著者Klinke, S, Soldano, A, Otero, L.H, Rivera, M, Catalano-Dupuy, D.L, Ceccarelli, E.A.
登録日2016-07-25
公開日2017-07-26
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Structural and mutational analyses of the Leptospira interrogans virulence-related heme oxygenase provide insights into its catalytic mechanism.
PLoS ONE, 12, 2017
2FU4
DownloadVisualize
BU of 2fu4 by Molmil
Crystal Structure of the DNA binding domain of E.coli FUR (Ferric Uptake Regulator)
分子名称: CADMIUM ION, CHLORIDE ION, Ferric uptake regulation protein, ...
著者Pecqueur, L, D'Autreaux, B, Dupuy, J, Nicolet, Y, Jacquamet, L, Brutscher, B, Michaud-Soret, I, Bersch, B.
登録日2006-01-26
公開日2006-05-16
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural changes of Escherichia coli ferric uptake regulator during metal-dependent dimerization and activation explored by NMR and X-ray crystallography
J.Biol.Chem., 281, 2006
4U3C
DownloadVisualize
BU of 4u3c by Molmil
Docking Site of Maltohexaose in the Mtb GlgE
分子名称: Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者Ronning, D.R, Lindenberger, J.J.
登録日2014-07-19
公開日2015-07-22
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3.98 Å)
主引用文献Crystal structures of Mycobacterium tuberculosis GlgE and complexes with non-covalent inhibitors.
Sci Rep, 5, 2015
4F37
DownloadVisualize
BU of 4f37 by Molmil
Structure of the tethered N-terminus of Alzheimer's disease A peptide
分子名称: Colicin-E7 immunity protein, Fab WO2 anti-amyloid-beta antibody Fab fragment, Im7 immunity protein
著者Nisbet, R.M, Nuttall, S.D, Caine, J.M, Rober, R, Hittaki, M, Pearce, L.A, Davydova, N, Masters, C.L, Varghese, J.N, Streltsov, V.A.
登録日2012-05-09
公開日2013-05-15
最終更新日2014-09-03
実験手法X-RAY DIFFRACTION (2.57 Å)
主引用文献Structural studies of the tethered N-terminus of the Alzheimer's disease amyloid-beta peptide.
Proteins, 81, 2013
2G3B
DownloadVisualize
BU of 2g3b by Molmil
Crystal structure of putative TetR-family transcriptional regulator from Rhodococcus sp.
分子名称: GLYCEROL, putative TetR-family transcriptional regulator
著者Chruszcz, M, Evdokimova, E, Cymborowski, M, Kagan, O, Wang, S, Koclega, K.D, Savchenko, A, Edwards, A, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
登録日2006-02-17
公開日2006-03-14
最終更新日2022-04-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of putative TetR-family transcriptional regulator from Rhodococcus sp.
To be Published
4F5E
DownloadVisualize
BU of 4f5e by Molmil
Crystal structure of ERIS/STING
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Transmembrane protein 173
著者Huang, Y.H, Liu, X.Y, Su, X.D.
登録日2012-05-13
公開日2012-06-27
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.601 Å)
主引用文献The structural basis for the sensing and binding of cyclic di-GMP by STING
Nat.Struct.Mol.Biol., 19, 2012
7RAZ
DownloadVisualize
BU of 7raz by Molmil
Small conductance mechanosensitive channel MscS
分子名称: PHOSPHATIDYLETHANOLAMINE, Small-conductance mechanosensitive channel
著者Catalano, C, Ben-Hail, D, Qiu, W, des Georges, A, Guo, Y.
登録日2021-07-05
公開日2022-07-13
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Small conductance mechanosensitive channel MscS
To Be Published

224572

件を2024-09-04に公開中

PDB statisticsPDBj update infoContact PDBjnumon