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PDB: 1778 results

5VG1
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BU of 5vg1 by Molmil
Neutron crystallographic structure of a Jonesia denitrificans lytic polysaccharide monooxygenase
Descriptor: COPPER (II) ION, Chitinase, PEROXIDE ION
Authors:Bacik, J.-P, Unkefer, C.J, Chen, J.C.H.
Deposit date:2017-04-10
Release date:2017-05-24
Last modified:2023-10-04
Method:NEUTRON DIFFRACTION (2.1 Å)
Cite:Neutron and Atomic Resolution X-ray Structures of a Lytic Polysaccharide Monooxygenase Reveal Copper-Mediated Dioxygen Binding and Evidence for N-Terminal Deprotonation.
Biochemistry, 56, 2017
5VG0
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BU of 5vg0 by Molmil
Room temperature X-ray crystallographic structure of a Jonesia denitrificans lytic polysaccharide monooxygenase at 1.1 angstrom resolution.
Descriptor: COPPER (II) ION, Chitinase, PEROXIDE ION
Authors:Bacik, J.-P, Unkefer, C.J, Chen, J.C.H.
Deposit date:2017-04-10
Release date:2017-05-24
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Neutron and Atomic Resolution X-ray Structures of a Lytic Polysaccharide Monooxygenase Reveal Copper-Mediated Dioxygen Binding and Evidence for N-Terminal Deprotonation.
Biochemistry, 56, 2017
3OOR
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BU of 3oor by Molmil
I-SceI mutant (K86R/G100T)complexed with C/G+4 DNA substrate
Descriptor: 5'-D(*CP*AP*CP*GP*CP*TP*AP*GP*GP*GP*AP*TP*AP*AP*CP*CP*GP*GP*GP*TP*AP*AP*TP*AP*C)-3', 5'-D(*GP*GP*TP*AP*TP*TP*AP*CP*CP*CP*GP*GP*TP*TP*AP*TP*CP*CP*CP*TP*AP*GP*CP*GP*T)-3', CALCIUM ION, ...
Authors:Joshi, R, Chen, J.-H, Golden, B.L, Gimble, F.S.
Deposit date:2010-08-31
Release date:2010-11-17
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Evolution of I-SceI Homing Endonucleases with Increased DNA Recognition Site Specificity.
J.Mol.Biol., 405, 2011
3SHU
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BU of 3shu by Molmil
Crystal structure of ZO-1 PDZ3
Descriptor: Tight junction protein ZO-1
Authors:Yu, J, Pan, L, Chen, J, Yu, H, Zhang, M.
Deposit date:2011-06-17
Release date:2011-09-28
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:The Structure of the PDZ3-SH3-GuK Tandem of ZO-1 Suggests a Supramodular Organization of the Conserved MAGUK Family Scaffold Core
To be Published
4F5X
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BU of 4f5x by Molmil
Location of the dsRNA-dependent polymerase, VP1, in rotavirus particles
Descriptor: Intermediate capsid protein VP6, RNA-directed RNA polymerase, VP2 protein, ...
Authors:Estrozi, L.F, Settembre, E.C, Goret, G, McClain, B, Zhang, X, Chen, J.Z, Grigorieff, N, Harrison, S.C.
Deposit date:2012-05-13
Release date:2012-10-24
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (5 Å)
Cite:Location of the dsRNA-Dependent Polymerase, VP1, in Rotavirus Particles.
J.Mol.Biol., 425, 2013
7C34
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BU of 7c34 by Molmil
Crystal structure of Serratia marcescens Chitinase B complexed with Berberine
Descriptor: BERBERINE, Chitinase
Authors:Chen, L, Chen, J, Yang, Q.
Deposit date:2020-05-11
Release date:2020-05-27
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.938 Å)
Cite:Crystal structure-guided design of berberine-based novel chitinase inhibitors.
J Enzyme Inhib Med Chem, 35, 2020
8T46
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BU of 8t46 by Molmil
Transporter associated with antigen processing (TAP) in the apo state
Descriptor: Antigen peptide transporter 1, Antigen peptide transporter 2
Authors:Lee, J, Oldham, M.L, Chen, J.
Deposit date:2023-06-08
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Principles of peptide selection by the transporter associated with antigen processing.
Proc.Natl.Acad.Sci.USA, 121, 2024
8T4H
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BU of 8t4h by Molmil
Transporter associated with antigen processing (TAP) bound to the 8-mer peptide RRYQSTEL
Descriptor: Antigen peptide transporter 1, Antigen peptide transporter 2, Synthetic 8-mer peptide
Authors:Lee, J, Chen, J.
Deposit date:2023-06-09
Release date:2024-06-19
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Transporter associated with antigen processing (TAP) bound to the 8-mer peptide RRYQSTEL
To Be Published
8T4F
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BU of 8t4f by Molmil
Transporter associated with antigen processing (TAP) bound to the 9-mer peptide RRYQKSTEL
Descriptor: Antigen peptide transporter 1, Antigen peptide transporter 2, Histone H3.3C peptide
Authors:Lee, J, Oldham, M.L, Chen, J.
Deposit date:2023-06-09
Release date:2024-06-19
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Transporter associated with antigen processing (TAP) bound to the 9-mer peptide RRYQKSTEL
To Be Published
8T4G
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BU of 8t4g by Molmil
Transporter associated with antigen processing (TAP) bound to the 9-mer peptide QYDDAVYKL
Descriptor: Antigen peptide transporter 1, Antigen peptide transporter 2, HLA-C4 specific peptide
Authors:Lee, J, Oldham, M.L, Chen, J.
Deposit date:2023-06-09
Release date:2024-06-19
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Transporter associated with antigen processing (TAP) bound to the 9-mer peptide QYDDAVYKL
To Be Published
8T4I
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BU of 8t4i by Molmil
Transporter associated with antigen processing (TAP) bound to the 7-mer peptide RRYSTEL
Descriptor: Antigen peptide transporter 1, Antigen peptide transporter 2, Synthetic 7-mer peptide
Authors:Lee, J, Oldham, M.L, Chen, J.
Deposit date:2023-06-09
Release date:2024-06-19
Method:ELECTRON MICROSCOPY (5.1 Å)
Cite:Transporter associated with antigen processing (TAP) bound to the 7-mer peptide RRYSTEL
To Be Published
8T4J
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BU of 8t4j by Molmil
Transporter associated with antigen processing (TAP) bound to the 14-mer peptide LPAVVGLSPGEQEY
Descriptor: Antigen peptide transporter 1, Antigen peptide transporter 2, HLA-B35 specific peptide
Authors:Lee, J, Oldham, M.L, Chen, J.
Deposit date:2023-06-09
Release date:2024-06-19
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Transporter associated with antigen processing (TAP) bound to the 14-mer peptide LPAVVGLSPGEQEY
To Be Published
8T4E
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BU of 8t4e by Molmil
Transporter associated with antigen processing (TAP) bound to the 9-mer peptide ILKEPVHGV
Descriptor: Antigen peptide transporter 1, Antigen peptide transporter 2, Transframe peptide
Authors:Lee, J, Oldham, M.L, Chen, J.
Deposit date:2023-06-09
Release date:2024-06-19
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Transporter associated with antigen processing (TAP) bound to the 9-mer peptide ILKEPVHGV
To Be Published
1ZXC
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BU of 1zxc by Molmil
Crystal structure of catalytic domain of TNF-alpha converting enzyme (TACE) with inhibitor
Descriptor: (3S)-4-{[4-(BUT-2-YNYLOXY)PHENYL]SULFONYL}-N-HYDROXY-2,2-DIMETHYLTHIOMORPHOLINE-3-CARBOXAMIDE, ADAM 17, ZINC ION
Authors:Levin, J.I, Chen, J.M, Laakso, L.M, Du, M, Schmid, J, Xu, W, Cummons, T, Xu, J, Zhang, Y, Jin, G, Cowling, R, Barone, D, Skotnicki, J.S.
Deposit date:2005-06-07
Release date:2005-09-27
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Acetylenic TACE inhibitors. Part 2: SAR of six-membered cyclic sulfonamide hydroxamates.
Bioorg.Med.Chem.Lett., 15, 2005
3WWE
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BU of 3wwe by Molmil
The complex of pOPH with PEG
Descriptor: 2-(2-ETHOXYETHOXY)ETHANOL, Oxidized polyvinyl alcohol hydrolase
Authors:Yang, Y, Ko, T.P, Li, J.H, Liu, L, Huang, C.H, Chen, J, Guo, R.T, Du, G.C.
Deposit date:2014-06-17
Release date:2015-04-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Roles of tryptophan residue and disulfide bond in the variable lid region of oxidized polyvinyl alcohol hydrolase
Biochem.Biophys.Res.Commun., 452, 2014
2A8H
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BU of 2a8h by Molmil
Crystal structure of catalytic domain of TACE with Thiomorpholine Sulfonamide Hydroxamate inhibitor
Descriptor: 4-({4-[(4-AMINOBUT-2-YNYL)OXY]PHENYL}SULFONYL)-N-HYDROXY-2,2-DIMETHYLTHIOMORPHOLINE-3-CARBOXAMIDE, ADAM 17, ZINC ION
Authors:Levin, J.I, Chen, J.M, Laakso, L.M, Du, M, Schmid, J, Xu, W, Cummons, T, Xu, J, Jin, G, Barone, D, Skotnicki, J.S.
Deposit date:2005-07-08
Release date:2006-02-07
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Acetylenic TACE inhibitors. Part 3: Thiomorpholine sulfonamide hydroxamates.
Bioorg.Med.Chem.Lett., 16, 2006
3WWD
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BU of 3wwd by Molmil
The complex of pOPH_S172C with DMSO
Descriptor: CITRIC ACID, DIMETHYL SULFOXIDE, Oxidized polyvinyl alcohol hydrolase
Authors:Yang, Y, Ko, T.P, Li, J.H, Liu, L, Huang, C.H, Chen, J, Guo, R.T, Du, G.C.
Deposit date:2014-06-17
Release date:2015-04-29
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Roles of tryptophan residue and disulfide bond in the variable lid region of oxidized polyvinyl alcohol hydrolase
Biochem.Biophys.Res.Commun., 452, 2014
3WWC
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BU of 3wwc by Molmil
The complex of pOPH_S172A of pNPB
Descriptor: CITRIC ACID, Oxidized polyvinyl alcohol hydrolase, butanoic acid
Authors:Yang, Y, Ko, T.P, Li, J.H, Liu, L, Huang, C.H, Chen, J, Guo, R.T, Du, G.C.
Deposit date:2014-06-17
Release date:2015-04-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Roles of tryptophan residue and disulfide bond in the variable lid region of oxidized polyvinyl alcohol hydrolase
Biochem.Biophys.Res.Commun., 452, 2014
6BZO
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BU of 6bzo by Molmil
Mtb RNAP Holo/RbpA/Fidaxomicin/upstream fork DNA
Descriptor: DNA (26-MER), DNA (32-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Darst, S.A, Campbell, E.A, Boyaci Selcuk, H, Chen, J.
Deposit date:2017-12-25
Release date:2018-03-28
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.38 Å)
Cite:Fidaxomicin jamsMycobacterium tuberculosisRNA polymerase motions needed for initiation via RbpA contacts.
Elife, 7, 2018
8KAL
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BU of 8kal by Molmil
Crystal structure of SpyCas9 in complex with sgRNA and 17nt target DNA
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, DNA (25-MER), DNA (5'-D(*TP*TP*TP*AP*GP*GP*TP*AP*TP*TP*G)-3'), ...
Authors:Chen, Y, Chen, J, Liu, L.
Deposit date:2023-08-03
Release date:2024-06-05
Last modified:2024-06-12
Method:X-RAY DIFFRACTION (3.16 Å)
Cite:Trans-nuclease activity of Cas9 activated by DNA or RNA target binding.
Nat.Biotechnol., 2024
3MGV
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BU of 3mgv by Molmil
Cre recombinase-DNA transition state
Descriptor: DNA (5'-D(*CP*AP*TP*AP*TP*GP*CP*TP*AP*TP*AP*CP*GP*AP*AP*GP*TP*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*CP*TP*TP*CP*GP*TP*AP*TP*AP*G)-3'), Recombinase cre, ...
Authors:Gibb, B.P, Gupta, K, Ghosh, K, Sharp, R, Chen, J, Van Duyne, G.D.
Deposit date:2010-04-07
Release date:2010-05-26
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Requirements for catalysis in the Cre recombinase active site.
Nucleic Acids Res., 38, 2010
6CO7
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BU of 6co7 by Molmil
Structure of the nvTRPM2 channel in complex with Ca2+
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Zhang, Z, Toth, B, Szollosi, A, Chen, J, Csanady, L.
Deposit date:2018-03-12
Release date:2018-05-16
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.07 Å)
Cite:Structure of a TRPM2 channel in complex with Ca2+explains unique gating regulation.
Elife, 7, 2018
6C0V
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BU of 6c0v by Molmil
Molecular structure of human P-glycoprotein in the ATP-bound, outward-facing conformation
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Multidrug resistance protein 1
Authors:Kim, Y.J, Chen, J.
Deposit date:2018-01-02
Release date:2018-01-31
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Molecular structure of human P-glycoprotein in the ATP-bound, outward-facing conformation.
Science, 359, 2018
3PUZ
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BU of 3puz by Molmil
Crystal Structure of a pre-translocation state MBP-Maltose transporter complex bound to AMP-PNP
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, Fused maltose transport subunit, ATP-binding component of ABC superfamily; regulatory protein, ...
Authors:Oldham, M.L, Chen, J.
Deposit date:2010-12-06
Release date:2011-05-18
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of the maltose transporter in a pretranslocation intermediate state.
Science, 332, 2011
2OGP
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BU of 2ogp by Molmil
Solution structure of the second PDZ domain of Par-3
Descriptor: Partitioning-defective 3 homolog
Authors:Feng, W, Wu, H, Chen, J, Chan, L.-N, Zhang, M.
Deposit date:2007-01-07
Release date:2007-12-25
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:PDZ domains of par-3 as potential phosphoinositide signaling integrators
Mol.Cell, 28, 2007

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