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PDB: 73 件

486D
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X-RAY CRYSTAL STRUCTURES OF 70S RIBOSOME FUNCTIONAL COMPLEXES
分子名称: 900 STEM-LOOP OF 16S RRNA IN THE 70S RIBOSOME, A-SITE CODON OF 70S RIBOSOME, A-SITE TRNA OF 70S RIBOSOME, ...
著者Cate, J.H, Yusupov, M.M, Yusupova, G.Zh, Earnest, T.N, Noller, H.F.
登録日1999-09-09
公開日1999-10-04
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (7.5 Å)
主引用文献X-ray crystal structures of 70S ribosome functional complexes.
Science, 285, 1999
1GID
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CRYSTAL STRUCTURE OF A GROUP I RIBOZYME DOMAIN: PRINCIPLES OF RNA PACKING
分子名称: COBALT HEXAMMINE(III), MAGNESIUM ION, P4-P6 RNA RIBOZYME DOMAIN
著者Cate, J.H, Gooding, A.R, Podell, E, Zhou, K, Golden, B.L, Kundrot, C.E, Cech, T.R, Doudna, J.A.
登録日1996-08-22
公開日1996-12-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of a group I ribozyme domain: principles of RNA packing.
Science, 273, 1996
4V9C
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Allosteric control of the ribosome by small-molecule antibiotics
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Cate, J.H.D, Pulk, A, Blanchard, S.C, Wang, L, Feldman, M.B, Wasserman, M.R, Altman, R.
登録日2012-07-25
公開日2014-07-09
最終更新日2014-12-10
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Allosteric control of the ribosome by small-molecule antibiotics.
Nat.Struct.Mol.Biol., 19, 2012
4EIR
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Structural basis for substrate targeting and catalysis by fungal polysaccharide monooxygenases (PMO-2)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, COPPER (II) ION, GLYCEROL, ...
著者Li, X, Beeson, W.T, Phillips, C.M, Marletta, M.A, Cate, J.H.
登録日2012-04-05
公開日2012-05-23
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Structural basis for substrate targeting and catalysis by fungal polysaccharide monooxygenases.
Structure, 20, 2012
4EIS
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Structural basis for substrate targeting and catalysis by fungal polysaccharide monooxygenases (PMO-3)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, COPPER (II) ION, PEROXIDE ION, ...
著者Li, X, Beeson, W.T, Phillips, C.M, Marletta, M.A, Cate, J.H.
登録日2012-04-05
公開日2012-05-23
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献Structural basis for substrate targeting and catalysis by fungal polysaccharide monooxygenases.
Structure, 20, 2012
4V4G
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Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.
分子名称: 16S ribosomal RNA, 23S RIBOSOMAL RNA, 30S ribosomal protein S10, ...
著者Vila-Sanjurjo, A, Schuwirth, B.S, Hau, C.W, Cate, J.H.
登録日2004-10-06
公開日2014-07-09
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (11.5 Å)
主引用文献Structural basis for the control of translation initiation during stress.
Nat.Struct.Mol.Biol., 11, 2004
7K00
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Structure of the Bacterial Ribosome at 2 Angstrom Resolution
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Watson, Z.L, Ward, F.R, Meheust, R, Ad, O, Schepartz, A, Banfield, J.F, Cate, J.H.D.
登録日2020-09-02
公開日2020-09-23
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (1.98 Å)
主引用文献Structure of the bacterial ribosome at 2 angstrom resolution.
Elife, 9, 2020
6U48
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E. coli 50S with phazolicin (PHZ) bound in exit tunnel
分子名称: 23S rRNA, 50S ribosomal protein bL17, 50S ribosomal protein bL19, ...
著者Watson, Z.L, Cate, J.H.D, Polikanov, Y.S, Severinov, K.
登録日2019-08-23
公開日2019-09-18
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (2.87 Å)
主引用文献Structure of ribosome-bound azole-modified peptide phazolicin rationalizes its species-specific mode of bacterial translation inhibition.
Nat Commun, 10, 2019
1VBY
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Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, and Mn2+ bound
分子名称: Hepatitis Delta virus ribozyme, MANGANESE (II) ION, SODIUM ION, ...
著者Ke, A, Zhou, K, Ding, F, Cate, J.H.D, Doudna, J.A.
登録日2004-03-03
公開日2004-05-18
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献A Conformational Switch controls hepatitis delta virus ribozyme catalysis
NATURE, 429, 2004
6I7V
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Ribosomal protein paralogs bL31 and bL36
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 1,4-DIAMINOBUTANE, ...
著者Pulk, A, Cate, J.H.D, Remme, J, Lilleorg, S, Reier, K, Peil, L, Liiv, A, Tammsalu, T.
登録日2018-11-19
公開日2018-12-05
最終更新日2024-04-24
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Bacterial ribosome heterogeneity: Changes in ribosomal protein composition during transition into stationary growth phase.
Biochimie, 156, 2018
6OLI
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Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)
分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
著者Li, W, Cate, J.H.D.
登録日2019-04-16
公開日2019-06-19
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structural basis for selective stalling of human ribosome nascent chain complexes by a drug-like molecule.
Nat.Struct.Mol.Biol., 26, 2019
6OLF
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Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
著者Li, W, Cate, J.H.D.
登録日2019-04-16
公開日2019-06-19
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Structural basis for selective stalling of human ribosome nascent chain complexes by a drug-like molecule.
Nat.Struct.Mol.Biol., 26, 2019
6OM0
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Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs
分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
著者Li, W, Cate, J.H.D.
登録日2019-04-17
公開日2019-06-19
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural basis for selective stalling of human ribosome nascent chain complexes by a drug-like molecule.
Nat.Struct.Mol.Biol., 26, 2019
6OLE
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BU of 6ole by Molmil
Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs
分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
著者Li, W, Cate, J.H.D.
登録日2019-04-16
公開日2019-06-19
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural basis for selective stalling of human ribosome nascent chain complexes by a drug-like molecule.
Nat.Struct.Mol.Biol., 26, 2019
6OM7
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BU of 6om7 by Molmil
Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs
分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
著者Li, W, Cate, J.H.D.
登録日2019-04-18
公開日2019-06-19
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structural basis for selective stalling of human ribosome nascent chain complexes by a drug-like molecule.
Nat.Struct.Mol.Biol., 26, 2019
6OLZ
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BU of 6olz by Molmil
Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA
分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
著者Li, W, Cate, J.H.D.
登録日2019-04-17
公開日2019-06-19
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Structural basis for selective stalling of human ribosome nascent chain complexes by a drug-like molecule.
Nat.Struct.Mol.Biol., 26, 2019
6OLG
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BU of 6olg by Molmil
Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)
分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
著者Li, W, Cate, J.H.D.
登録日2019-04-16
公開日2019-06-19
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural basis for selective stalling of human ribosome nascent chain complexes by a drug-like molecule.
Nat.Struct.Mol.Biol., 26, 2019
8G6W
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Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe
分子名称: 16S rRNA, 2-AMINO-BENZAMIDE, 23S rRNA, ...
著者Majumdar, C, Cate, J.H.D.
登録日2023-02-16
公開日2023-04-05
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (2.02 Å)
主引用文献Aminobenzoic Acid Derivatives Obstruct Induced Fit in the Catalytic Center of the Ribosome.
Acs Cent.Sci., 9, 2023
8G6X
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Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe
分子名称: 23S rRNA, 3'-amino-3'-deoxyadenosine 5'-(dihydrogen phosphate), 3-aminobenzamide, ...
著者Majumdar, C, Cate, J.H.D.
登録日2023-02-16
公開日2023-03-22
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (2.31 Å)
主引用文献Aminobenzoic Acid Derivatives Obstruct Induced Fit in the Catalytic Center of the Ribosome.
Acs Cent.Sci., 9, 2023
8G6Y
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Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe
分子名称: 23S rRNA, 3'-amino-3'-deoxyadenosine 5'-(dihydrogen phosphate), 3-aminopyridine-4-carboxamide, ...
著者Majumdar, C, Cate, J.H.D.
登録日2023-02-16
公開日2023-04-05
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (2.09 Å)
主引用文献Aminobenzoic Acid Derivatives Obstruct Induced Fit in the Catalytic Center of the Ribosome.
Acs Cent.Sci., 9, 2023
8EIU
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E. coli 70S ribosome with A-loop mutations U2554C and U2555C
分子名称: 16S rRNA, 23S rRNA, 3'-amino-3'-deoxyadenosine 5'-(dihydrogen phosphate), ...
著者Nissley, A.J, Penev, P.I, Watson, Z.L, Banfield, J.F, Cate, J.H.D.
登録日2022-09-15
公開日2023-02-01
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (2.24 Å)
主引用文献Rare ribosomal RNA sequences from archaea stabilize the bacterial ribosome.
Nucleic Acids Res., 51, 2023
8EMM
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Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Watson, Z.L, Cate, J.H.D.
登録日2022-09-28
公開日2023-05-31
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (2.1 Å)
主引用文献Atomistic simulations of the Escherichia coli ribosome provide selection criteria for translationally active substrates.
Nat.Chem., 15, 2023
8FTO
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E. coli 70S ribosome with an improved MS2 tag inserted in H98
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Nissley, A.J, Cate, J.H.D.
登録日2023-01-12
公開日2023-08-02
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (1.85 Å)
主引用文献Interactions between terminal ribosomal RNA helices stabilize the E. coli large ribosomal subunit.
Rna, 29, 2023
4V9P
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Control of ribosomal subunit rotation by elongation factor G
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Pulk, A, Cate, J.H.D.
登録日2013-05-03
公開日2014-07-09
最終更新日2014-12-17
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Control of ribosomal subunit rotation by elongation factor G.
Science, 340, 2013
4V5Y
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Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Borovinskaya, M.A, Pai, R.D, Zhang, W, Schuwirth, B.-S, Holton, J.M, Hirokawa, G, Kaji, H, Kaji, A, Cate, J.H.D.
登録日2007-06-19
公開日2014-07-09
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (4.45 Å)
主引用文献Structural basis for aminoglycoside inhibition of bacterial ribosome recycling.
Nat.Struct.Mol.Biol., 14, 2007

 

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