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PDB: 89774 results

9AVQ
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Crystal structure of SARS-CoV-2 main protease A191T mutant in complex with an inhibitor Nirmatrelvir
Descriptor: (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase nsp5, DI(HYDROXYETHYL)ETHER
Authors:Bulut, H, Hattori, S, Hayashi, H, Hasegawa, K, Li, M, Wlodawer, A, Tamamura, H, Mitsuya, H.
Deposit date:2024-03-04
Release date:2024-04-24
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Structural and virologic mechanism of emergence of main protease inhibitor-resistance in SARS-CoV-2 as selected with main protease inhibitors
To Be Published
9E1E
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BU of 9e1e by Molmil
Structure of RyR1 in the primed state in the presence of uracil
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1A, ...
Authors:Miotto, M.C, Marks, A.R.
Deposit date:2024-10-21
Release date:2024-10-30
Method:ELECTRON MICROSCOPY (2.92 Å)
Cite:Targeting Ryanodine Receptors with Allopurinol and Xanthine Derivatives for the Treatment of Cardiac and Musculoskeletal Weakness Disorders
To Be Published
9E1I
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BU of 9e1i by Molmil
Structure of RyR1 in the open state in the presence of oxopyricid
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1A, ...
Authors:Miotto, M.C, Marks, A.R.
Deposit date:2024-10-21
Release date:2024-10-30
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Targeting Ryanodine Receptors with Allopurinol and Xanthine Derivatives for the Treatment of Cardiac and Musculoskeletal Weakness Disorders
To Be Published
9E18
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BU of 9e18 by Molmil
Structure of RyR1 in the primed state in the presence of pentoxifylline
Descriptor: 3,7-DIMETHYL-1-(5-OXOHEXYL)-3,7-DIHYDRO-1H-PURINE-2,6-DIONE, ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, ...
Authors:Miotto, M.C, Marks, A.R.
Deposit date:2024-10-21
Release date:2024-10-30
Method:ELECTRON MICROSCOPY (2.68 Å)
Cite:Targeting Ryanodine Receptors with Allopurinol and Xanthine Derivatives for the Treatment of Cardiac and Musculoskeletal Weakness Disorders
To Be Published
9DKZ
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BU of 9dkz by Molmil
In situ microED structure of the Eosinophil major basic protein-1
Descriptor: Bone marrow proteoglycan
Authors:Yang, J.E, Bingman, C.A, Mitchell, J, Mosher, D, Wright, E.R.
Deposit date:2024-09-10
Release date:2024-09-25
Last modified:2024-10-16
Method:ELECTRON CRYSTALLOGRAPHY (3.2 Å)
Cite:In situ microED structure of the Eosinophil major basic protein-1
To Be Published
9FET
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BU of 9fet by Molmil
Crystal Structure of Human Vaccinia-related kinase 2 (VRK-2) bound to JA-47
Descriptor: Serine/threonine-protein kinase VRK2, [4-({4-[(5-cyclopropyl-1H-pyrazol-3-yl)amino]pyrimidin-2-yl}amino)phenyl]acetonitrile
Authors:Wang, G.Q, Amrhein, J.A, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2024-05-21
Release date:2024-09-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of Human Vaccinia-related kinase 2 (VRK-2) bound to JA-47
To Be Published
9DP6
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BU of 9dp6 by Molmil
Mycolicibacterium smegmatis MmpL5-AcpM structure
Descriptor: 4'-PHOSPHOPANTETHEINE, Meromycolate extension acyl carrier protein, MmpL5 protein
Authors:Maharjan, R, Klenotic, P.A, Zhang, Z, Yu, E.W.
Deposit date:2024-09-20
Release date:2024-10-23
Method:ELECTRON MICROSCOPY (2.81 Å)
Cite:Mycolicibacterium smegmatis MmpL5-AcpM structure
To Be Published
9EMJ
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BU of 9emj by Molmil
SARS-CoV-2 methyltransferase nsp10-16 in complex with Toyocamycin and m7GpppA (Cap0-analog)
Descriptor: 1,2-ETHANEDIOL, 2'-O-methyltransferase nsp16, 4-amino-7-(beta-D-ribofuranosyl)-7H-pyrrolo[2,3-d]pyrimidine-5-carbonitrile, ...
Authors:Kremling, V, Sprenger, J, Oberthuer, D, Kiene, A.
Deposit date:2024-03-08
Release date:2024-03-20
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:SARS-CoV-2 methyltransferase nsp10-16 in complex with natural and drug-like purine analogs for guiding structure-based drug development
To Be Published
9FLB
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BU of 9flb by Molmil
Crystal structure of haspin (GSG2) in complex with MU1464
Descriptor: 5-(1-methylpyrazol-4-yl)-3-pyridin-4-yl-thieno[3,2-b]pyridine, SODIUM ION, Serine/threonine-protein kinase haspin
Authors:Chaikuad, A, Paruch, K, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2024-06-04
Release date:2024-09-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of haspin (GSG2) in complex with MU1464
To Be Published
5OW2
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BU of 5ow2 by Molmil
Japanese encephalitis virus capsid protein
Descriptor: 1,2-ETHANEDIOL, CITRATE ANION, capsid protein
Authors:Poonsiri, T, Wright, G.S.A, Antonyuk, S.V.
Deposit date:2017-08-30
Release date:2018-10-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Crystal Structure of the Japanese Encephalitis Virus Capsid Protein.
Viruses, 11, 2019
8QKB
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BU of 8qkb by Molmil
Crystal structure of human cathepsin L in complex with the vinyl sulfone inhibitor K777
Descriptor: 1,2-ETHANEDIOL, Cathepsin L, DI(HYDROXYETHYL)ETHER, ...
Authors:Falke, S, Lieske, J, Guenther, S, Reinke, P.Y.A, Ewert, W, Loboda, J, Karnicar, K, Usenik, A, Lindic, N, Sekirnik, A, Chapman, H.N, Hinrichs, W, Turk, D, Meents, A.
Deposit date:2023-09-14
Release date:2023-09-27
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural Elucidation and Antiviral Activity of Covalent Cathepsin L Inhibitors.
J.Med.Chem., 67, 2024
9E1B
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BU of 9e1b by Molmil
Structure of RyR1 in the open state in the presence of dyphylline
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1A, ...
Authors:Miotto, M.C, Marks, A.R.
Deposit date:2024-10-21
Release date:2024-10-30
Method:ELECTRON MICROSCOPY (4.49 Å)
Cite:Targeting Ryanodine Receptors with Allopurinol and Xanthine Derivatives for the Treatment of Cardiac and Musculoskeletal Weakness Disorders
To Be Published
8Q68
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BU of 8q68 by Molmil
Crystal structure of TEAD1-YBD in complex with irreversible compound SWTX-143
Descriptor: Transcriptional enhancer factor TEF-1, ~{N}-[(3~{S})-5-azanyl-1-[4-(trifluoromethyl)phenyl]-3,4-dihydro-2~{H}-quinolin-3-yl]propanamide
Authors:Ciesielski, F, Spieser, S.A.H, Marchand, A, Gwaltney, S.L.
Deposit date:2023-08-11
Release date:2023-10-04
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:A Novel Irreversible TEAD Inhibitor, SWTX-143, Blocks Hippo Pathway Transcriptional Output and Causes Tumor Regression in Preclinical Mesothelioma Models.
Mol.Cancer Ther., 23, 2024
9JE0
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BU of 9je0 by Molmil
Human URAT1 bound to benzbromarone
Descriptor: Solute carrier family 22 member 12, [3,5-bis(bromanyl)-4-oxidanyl-phenyl]-(2-ethyl-1-benzofuran-3-yl)methanone
Authors:Wu, C, Zhang, C, Jin, S, Wang, J.J, Dai, A, Jiang, Y, Yang, D, Xu, H.E.
Deposit date:2024-09-01
Release date:2024-10-16
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.23 Å)
Cite:Molecular mechanisms of uric acid transport by the native human URAT1 and its inhibition by anti-gout drugs
Biorxiv, 2024
9DVF
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BU of 9dvf by Molmil
Structure of the native PLP synthase subunit PdxS from Methanosarcina acetivorans
Descriptor: Pyridoxal 5'-phosphate synthase subunit PdxS
Authors:Agnew, A, Humm, E, Zhou, K, Gunsalus, R, Zhou, Z.H.
Deposit date:2024-10-07
Release date:2024-10-30
Method:ELECTRON MICROSCOPY (3.38 Å)
Cite:Structure and identification of the native PLP synthase complex from Methanosarcina acetivorans lysate
To Be Published
9EML
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BU of 9eml by Molmil
SARS-CoV-2 methyltransferase nsp10-16 in complex with SAM and m7GpppA (Cap0-analog)/m7GpppAm (Cap1-analog)
Descriptor: 1,2-ETHANEDIOL, 2'-O-methyltransferase nsp16, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ...
Authors:Kremling, V, Sprenger, J, Oberthuer, D, Kiene, A.
Deposit date:2024-03-08
Release date:2024-03-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:SARS-CoV-2 methyltransferase nsp10-16 in complex with natural and drug-like purine analogs for guiding structure-based drug development
To Be Published
9GYO
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BU of 9gyo by Molmil
CryoEM structure of Gs-coupled GPBAR with small molecule agonist P395
Descriptor: 2-(ethylamino)-6-[3-(4-propan-2-ylphenyl)propanoyl]-7,8-dihydro-5H-pyrido[4,3-d]pyrimidine-4-carboxamide, CHOLESTEROL, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Frechard, A, Brooks, I.
Deposit date:2024-10-02
Release date:2024-10-09
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Deciphering molecular determinants of GPCR-G protein receptor interactions by complementary integrative structural biology methods
To Be Published
9CUX
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BU of 9cux by Molmil
Crystal Structure of SETDB1 Tudor domain in complex with UNC100016
Descriptor: (2E)-N-(4-{[6-(dimethylamino)hexyl]amino}-2-{[5-(dimethylamino)pentyl]amino}quinazolin-6-yl)but-2-enamide, 1,2-ETHANEDIOL, Histone-lysine N-methyltransferase SETDB1, ...
Authors:Silva, M, Dong, A, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
Deposit date:2024-07-26
Release date:2024-10-02
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Crystal Structure of SETDB1 Tudor domain in complex with UNC100016
To be published
9FLC
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BU of 9flc by Molmil
Crystal structure of haspin (GSG2) in complex with MU1668
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 5-(1-methylpyrazol-3-yl)-3-pyridin-4-yl-thieno[3,2-b]pyridine, GLYCEROL, ...
Authors:Chaikuad, A, Paruch, K, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2024-06-04
Release date:2024-09-11
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Crystal structure of haspin (GSG2) in complex with MU1668
To Be Published
9FLO
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BU of 9flo by Molmil
Crystal structure of human Haspin (GSG2) kinase bound to MU2181
Descriptor: NICKEL (II) ION, Serine/threonine-protein kinase haspin, ~{N}-(1,4-dimethylpyrazol-3-yl)-3-(1,2-thiazol-5-yl)thieno[3,2-b]pyridin-5-amine
Authors:Kraemer, A, Paruch, K, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2024-06-05
Release date:2024-09-11
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of human Haspin (GSG2) kinase bound to MU2181
To Be Published
3NG6
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BU of 3ng6 by Molmil
The crystal structure of hemoglobin I from Trematomus newnesi in deoxygenated state obtained through an oxidation/reduction cycle in which potassium hexacyanoferrate and sodium dithionite were alternatively added
Descriptor: Hemoglobin subunit alpha-1, Hemoglobin subunit beta-1/2, PROTOPORPHYRIN IX CONTAINING FE
Authors:Vergara, A, Vitagliano, L, Merlino, A, Sica, F, Marino, K, Mazzarella, L.
Deposit date:2010-06-11
Release date:2010-07-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:An order-disorder transition plays a role in switching off the root effect in fish hemoglobins.
J.Biol.Chem., 285, 2010
9JE1
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BU of 9je1 by Molmil
Human URAT1 bound to dotinurad
Descriptor: Solute carrier family 22 member 12, dotinurad
Authors:Wu, C, Zhang, C, Jin, S, Wang, J.J, Dai, A, Jiang, Y, Yang, D, Xu, H.E.
Deposit date:2024-09-01
Release date:2024-10-16
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Molecular mechanisms of uric acid transport by the native human URAT1 and its inhibition by anti-gout drugs
Biorxiv, 2024
5BS6
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BU of 5bs6 by Molmil
Apo structure of transcriptional factor AraR from Bacteroides thetaiotaomicron VPI
Descriptor: 1,2-ETHANEDIOL, transcriptional regulator AraR
Authors:Chang, C, Tesar, C, Jedrzejczak, R, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2015-06-01
Release date:2015-06-17
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:A novel transcriptional regulator of L-arabinose utilization in human gut bacteria.
Nucleic Acids Res., 43, 2015
9FLT
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BU of 9flt by Molmil
Crystal structure of human Haspin (GSG2) kinase bound to chemical probe MU1920
Descriptor: NICKEL (II) ION, Serine/threonine-protein kinase haspin, ~{N}-(1,4-dimethylpyrazol-3-yl)-3-pyridin-4-yl-thieno[3,2-b]pyridin-5-amine
Authors:Kraemer, A, Paruch, K, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2024-06-05
Release date:2024-09-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of human Haspin (GSG2) kinase bound to chemical probe MU1920
To Be Published
9CII
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BU of 9cii by Molmil
Crystal structure of Staphylococcal nuclease variant Delta+PHS V23D/L36R at cryogenic temperature
Descriptor: CALCIUM ION, THYMIDINE-3',5'-DIPHOSPHATE, Thermonuclease
Authors:Zhang, Y, Schlessman, J.L, Robinson, A.C, Garcia-Moreno E, B.
Deposit date:2024-07-03
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of Staphylococcal nuclease variant Delta+PHS V23D/L36R at cryogenic temperature
To Be Published

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PDB entries from 2024-11-06

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