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PDB: 89346 results

6FA2
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Antibody derived (Abd-5) small molecule binding to KRAS.
Descriptor: 4-[2-(dimethylamino)ethoxy]-~{N}-[[(3~{R})-5-(6-methoxypyridin-2-yl)-2,3-dihydro-1,4-benzodioxin-3-yl]methyl]benzamide, GTPase KRas, MAGNESIUM ION, ...
Authors:Quevedo, C.E, Cruz-Migoni, A, Ehebauer, M.T, Carr, S.B, Phillips, S.V.E, Rabbitts, T.H.
Deposit date:2017-12-15
Release date:2018-09-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Small molecule inhibitors of RAS-effector protein interactions derived using an intracellular antibody fragment.
Nat Commun, 9, 2018
4XZ1
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ZAP-70-tSH2:Compound-B adduct
Descriptor: 2-[(7-chloro-4-nitro-2,1,3-benzoxadiazol-5-yl)amino]ethanol, Tyrosine-protein kinase ZAP-70, doubly phosphorylated ITAM peptide
Authors:Barros, T, Kuriyan, J, Winger, J.A, Visperas, P.R.
Deposit date:2015-02-03
Release date:2015-07-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Modification by covalent reaction or oxidation of cysteine residues in the tandem-SH2 domains of ZAP-70 and Syk can block phosphopeptide binding.
Biochem. J., 465, 2015
6FA3
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Antibody derived (Abd-6) small molecule binding to KRAS.
Descriptor: DIMETHYL SULFOXIDE, GTPase KRas, MAGNESIUM ION, ...
Authors:Quevedo, C.E, Cruz-Migoni, A, Ehebauer, M.T, Carr, S.B, Phillips, S.E.V, Rabbitts, T.H.
Deposit date:2017-12-15
Release date:2018-08-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Small molecule inhibitors of RAS-effector protein interactions derived using an intracellular antibody fragment.
Nat Commun, 9, 2018
6M7C
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BU of 6m7c by Molmil
Crystal structure of C-terminal fragment of pilus adhesin SpaC from Lactobacillus rhamnosus GG
Descriptor: Pilus assembly protein
Authors:Kant, A, Palva, A, von Ossowski, I, Krishnan, V.
Deposit date:2020-03-18
Release date:2020-07-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.18 Å)
Cite:Crystal structure of lactobacillar SpaC reveals an atypical five-domain pilus tip adhesin: Exposing its substrate-binding and assembly in SpaCBA pili.
J.Struct.Biol., 211, 2020
5K1N
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Human TTR altered by a rhenium tris-carbonyl Pyta-C12 derivative
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Stura, E.A, Ciccone, L, Shepard, W.
Deposit date:2016-05-18
Release date:2016-07-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Human TTR conformation altered by rhenium tris-carbonyl derivatives.
J.Struct.Biol., 195, 2016
7M9X
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BU of 7m9x by Molmil
HIV-1 Protease (I84V) in Complex with NR02-79
Descriptor: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(2S,3R)-4-{(2-ethylbutyl)[(1S)-1-hydroxy-2,3-dihydro-1H-indene-5-sulfonyl]amino}-3-hydroxy-1-phenylbutan-2-yl]carbamate, Protease, SULFATE ION
Authors:Lockbaum, G.J, Schiffer, C.A.
Deposit date:2021-03-31
Release date:2022-08-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.831 Å)
Cite:HIV-1 Protease (I84V) in Complex with NR02-79
To Be Published
5K1X
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Catalytic domain of polyspecific pyrrolysyl-tRNA synthetase mutant Y306A/N346A/C348A/Y384F in complex with AMPPNP
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Weber, A.
Deposit date:2016-05-18
Release date:2016-10-19
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Genetically encoded fluorophenylalanines enable insights into the recognition of lysine trimethylation by an epigenetic reader.
Chem.Commun.(Camb.), 52, 2016
5GMD
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BU of 5gmd by Molmil
Crystal structure of Sulfolobus solfataricus diphosphomevalonate decarboxylase in complex with ATP-gamma-S
Descriptor: (3R)-3-HYDROXY-5-{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-3-METHYLPENTANOIC ACID, ADENOSINE MONOPHOSPHATE, Diphosphomevalonate decarboxylase, ...
Authors:Unno, H, Hemmi, H, Hattori, A.
Deposit date:2016-07-13
Release date:2016-12-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A Single Amino Acid Mutation Converts (R)-5-Diphosphomevalonate Decarboxylase into a Kinase
J. Biol. Chem., 292, 2017
4XZJ
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Crystal structure of ADP-ribosyltransferase Vis in complex with NAD
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Putative NAD(+)--arginine ADP-ribosyltransferase Vis
Authors:Pfoh, R, Ravulapalli, R, Merrill, A.R, Pai, E.F.
Deposit date:2015-02-04
Release date:2015-09-23
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Characterization of Vis Toxin, a Novel ADP-Ribosyltransferase from Vibrio splendidus.
Biochemistry, 54, 2015
7Z4V
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Structure of Serine-Threonine kinase STK25 in complex with compound
Descriptor: 1,2-ETHANEDIOL, Serine/threonine-protein kinase 25, ~{N}-(5-~{tert}-butyl-1~{H}-pyrazol-3-yl)-4-pyrrolidin-1-ylsulfonyl-benzamide
Authors:Nawrotek, A, Vuillard, L, Miallau, L.
Deposit date:2022-03-04
Release date:2022-04-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.644 Å)
Cite:Targeting non-alcoholic fatty liver disease: Design, X-ray co-crystal structure and synthesis of 'first-in-kind' inhibitors of serine/threonine kinase25.
Bioorg.Med.Chem.Lett., 75, 2022
6FCU
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BU of 6fcu by Molmil
The X-ray Structure of Lytic Transglycosylase Slt inactive mutant E503Q from Pseudomonas aeruginosa in complex with 4(NAG-NAMpentapeptide)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-3-O-[(2R)-1-amino-1-oxopropan-2-yl]-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-methyl 2-acetamido-2-deoxy-beta-D-glucopyranoside, ACETATE ION, ALANINE, ...
Authors:Batuecas, M.T, Dominguez-Gil, T, Hermoso, J.A.
Deposit date:2017-12-21
Release date:2018-04-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Exolytic and endolytic turnover of peptidoglycan by lytic transglycosylase Slt ofPseudomonas aeruginosa.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5M7U
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BU of 5m7u by Molmil
Structure of human O-GlcNAc hydrolase with new iminocyclitol type inhibitor
Descriptor: 2-[(2~{R},3~{S},4~{R},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)-1-[3-[3-(trifluoromethyl)phenyl]propyl]pyrrolidin-2-yl]-~{N}-methyl-ethanamide, Protein O-GlcNAcase
Authors:Roth, C, Chan, S, Offen, W.A, Hemsworth, G.R, Willems, L.I, King, D, Varghese, V, Britton, R, Vocadlo, D.J, Davies, G.J.
Deposit date:2016-10-28
Release date:2017-03-29
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and functional insight into human O-GlcNAcase.
Nat. Chem. Biol., 13, 2017
1B2X
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BU of 1b2x by Molmil
BARNASE WILDTYPE STRUCTURE AT PH 7.5 FROM A CRYO_COOLED CRYSTAL AT 100K
Descriptor: PROTEIN (BARNASE), ZINC ION
Authors:Harrison, P, Vaughan, C.K, Buckle, A.M, Fersht, A.R.
Deposit date:1998-12-03
Release date:1998-12-09
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A structural double-mutant cycle: estimating the strength of a buried salt bridge in barnase.
Acta Crystallogr.,Sect.D, 58, 2002
6MAU
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BU of 6mau by Molmil
Crystal structure of human BRD4(1) in complex with CN210 (compound 19)
Descriptor: 1-(4-{6-(3,5-dimethyl-1,2-oxazol-4-yl)-4-[(3S)-3-phenylmorpholin-4-yl]quinazolin-2-yl}-1H-pyrazol-1-yl)-2-methylpropan-2-ol, Bromodomain-containing protein 4, GLYCEROL
Authors:Nadupalli, A, Fontano, E, Connors, C.R, Chan, S.G, Olland, A.M, Lakshminarasimhan, D, White, A, Suto, R.K.
Deposit date:2018-08-28
Release date:2019-04-03
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Lead optimization and efficacy evaluation of quinazoline-based BET family inhibitors for potential treatment of cancer and inflammatory diseases.
Bioorg. Med. Chem. Lett., 29, 2019
4XUB
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BU of 4xub by Molmil
Crystal Structure of the bromodomain of human BAZ2B in complex with BAZ2-ICR chemical probe
Descriptor: 1,2-ETHANEDIOL, 4-{4-(1-methyl-1H-pyrazol-4-yl)-1-[2-(4-methyl-1H-1,2,3-triazol-1-yl)ethyl]-1H-imidazol-5-yl}benzonitrile, Bromodomain adjacent to zinc finger domain protein 2B
Authors:Chaikuad, A, Felletar, I, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2015-01-25
Release date:2015-03-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structure Enabled Design of BAZ2-ICR, A Chemical Probe Targeting the Bromodomains of BAZ2A and BAZ2B.
J.Med.Chem., 58, 2015
3LX9
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BU of 3lx9 by Molmil
Interconversion of Human Lysosomal Enzyme Specificities
Descriptor: 2-acetamido-2-deoxy-alpha-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, Alpha-galactosidase A, ...
Authors:Tomasic, I.B, Metcalf, M.C, Guce, A.I, Clark, N.E, Garman, S.C.
Deposit date:2010-02-25
Release date:2010-05-05
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Interconversion of the specificities of human lysosomal enzymes associated with Fabry and Schindler diseases.
J.Biol.Chem., 285, 2010
6EW9
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BU of 6ew9 by Molmil
CRYSTAL STRUCTURE OF DEGS STRESS SENSOR PROTEASE IN COMPLEX WITH ACTIVATING DNRLGLVYQF PEPTIDE
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, DNRLGLVYQF PEPTIDE, ...
Authors:Vetter, I.R, Porfetye, A.T, Stege, P.
Deposit date:2017-11-03
Release date:2018-04-25
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Identification of Noncatalytic Lysine Residues from Allosteric Circuits via Covalent Probes.
ACS Chem. Biol., 13, 2018
7B6N
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BU of 7b6n by Molmil
Crystal structure of MurE from E.coli in complex with Z757284952
Descriptor: 1,2-ETHANEDIOL, N-(2-(2,4-dioxothiazolidin-3-yl)ethyl)-3-methylbenzamide, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
Authors:Koekemoer, L, Steindel, M, Fairhead, M, Arrowsmith, C.H, Edwards, A.M, Bountra, C, von Delft, F, Krojer, T, Structural Genomics Consortium (SGC)
Deposit date:2020-12-07
Release date:2020-12-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Crystal structure of MurE from E.coli
To Be Published
5BWD
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BU of 5bwd by Molmil
Benzylsuccinate alpha-gamma bound to fumarate
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FUMARIC ACID, TETRAETHYLENE GLYCOL, ...
Authors:Funk, M.A, Drennan, C.L.
Deposit date:2015-06-07
Release date:2015-08-05
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Substrate-bound Structures of Benzylsuccinate Synthase Reveal How Toluene Is Activated in Anaerobic Hydrocarbon Degradation.
J.Biol.Chem., 290, 2015
5MAM
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BU of 5mam by Molmil
Human insulin in complex with serotonin
Descriptor: CHLORIDE ION, Insulin A chain, Insulin B chain, ...
Authors:Brzozowski, A.M, Turkenburg, J.P, Jiracek, J, Zakova, L.
Deposit date:2016-11-03
Release date:2017-04-05
Last modified:2017-05-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Computational and structural evidence for neurotransmitter-mediated modulation of the oligomeric states of human insulin in storage granules.
J. Biol. Chem., 292, 2017
4XWX
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BU of 4xwx by Molmil
Crystal structure of the PTB domain of SHC
Descriptor: 1,2-ETHANEDIOL, SHC-transforming protein 1, SODIUM ION
Authors:Chaikuad, A, Tallant, C, Krojer, T, Dixon-Clarke, S, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2015-01-29
Release date:2015-02-25
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Crystal structure of the PTB domain of SHC
To Be Published
6EY2
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Crystal structure of XIAP-BIR3 in complex with a cIAP1-selective SM
Descriptor: (3~{S},6~{S},7~{S},9~{a}~{S})-~{N}-[(4-~{tert}-butylphenyl)methyl]-7-(hydroxymethyl)-6-[[(2~{S})-2-(methylamino)butanoyl]amino]-5-oxidanylidene-1,2,3,6,7,8,9,9~{a}-octahydropyrrolo[1,2-a]azepine-3-carboxamide, E3 ubiquitin-protein ligase XIAP, ZINC ION
Authors:Cossu, F, Corti, A, Milani, M, Mastrangelo, E.
Deposit date:2017-11-10
Release date:2018-08-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure-based design and molecular profiling of Smac-mimetics selective for cellular IAPs.
FEBS J., 285, 2018
5K5K
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BU of 5k5k by Molmil
Crystal structure of laccasse from Thermus thermophilus HB27 (ascorbic acid 10 min)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Laccase
Authors:Diaz-Vilchis, A, Ruiz-Arellano, R.R, Rosas-Benitez, E, Rudino-Pinera, E.
Deposit date:2016-05-23
Release date:2017-06-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.796 Å)
Cite:Preserving metallic sites affected by radiation damage: the CuT2 case in Thermus thermophilus multicopper oxidase
To be Published
3LWK
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BU of 3lwk by Molmil
Crystal structure of human Beta-crystallin A4 (CRYBA4)
Descriptor: Beta-crystallin A4, GLYCEROL, PHOSPHATE ION
Authors:Chaikuad, A, Shafqat, N, Krojer, T, Yue, W.W, Cocking, R, Vollmar, M, Muniz, J.R.C, Pike, A.C.W, Arrowsmith, C.H, Weigelt, J, Edwards, A.M, Bountra, C, Oppermann, U, Structural Genomics Consortium (SGC)
Deposit date:2010-02-24
Release date:2010-03-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of human Beta-crystallin A4 (CRYBA4)
To be Published
4XXK
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BU of 4xxk by Molmil
Crystal structure of the Semet-derivative of the Bilin-binding domain of phycobilisome core-membrane linker ApcE
Descriptor: PHYCOCYANOBILIN, Phycobiliprotein ApcE
Authors:Tang, K, Ding, W.-L, Hoppner, A, Gartner, W, Zhao, K.-H.
Deposit date:2015-01-30
Release date:2015-12-16
Last modified:2016-01-13
Method:X-RAY DIFFRACTION (2.97 Å)
Cite:The terminal phycobilisome emitter, LCM: A light-harvesting pigment with a phytochrome chromophore.
Proc.Natl.Acad.Sci.USA, 112, 2015

225946

數據於2024-10-09公開中

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