4XXK

Crystal structure of the Semet-derivative of the Bilin-binding domain of phycobilisome core-membrane linker ApcE

Summary for 4XXK

• Entry DOI: 10.2210/pdb4xxk/pdb
• Related: 4XXI
• Descriptor: Phycobiliprotein ApcE, PHYCOCYANOBILIN (2 entities in total)
• Functional Keywords: phycobilisome, apce, phycocyanobilin attachment, transferase
• Biological source: Nostoc sp. (strain PCC 7120 / UTEX 2576)
• Cellular location: Cellular thylakoid membrane ; Peripheral membrane protein ; Cytoplasmic side : P80559
• Total number of polymer chains: 2
• Total formula weight: 36812.96

Authors

Tang, K.,Ding, W.-L.,Hoppner, A.,Gartner, W.,Zhao, K.-H. (deposition date: 2015-01-30, release date: 2015-12-16, Last modification date: 2024-10-23)

Primary citation

Tang, K.,Ding, W.-L.,Hoppner, A.,Zhao, C.,Zhang, L.,Hontani, Y.,Kennis, J.T.M.,Gartner, W.,Scheer, H.,Zhou, M.,Zhao, K.-H.
The terminal phycobilisome emitter, LCM: A light-harvesting pigment with a phytochrome chromophore.
Proc.Natl.Acad.Sci.USA, 112:15880-15885, 2015

PubMed Abstract: Photosynthesis relies on energy transfer from light-harvesting complexes to reaction centers. Phycobilisomes, the light-harvesting antennas in cyanobacteria and red algae, attach to the membrane via the multidomain core-membrane linker, L(CM). The chromophore domain of L(CM) forms a bottleneck for funneling the harvested energy either productively to reaction centers or, in case of light overload, to quenchers like orange carotenoid protein (OCP) that prevent photodamage. The crystal structure of the solubly modified chromophore domain from Nostoc sp. PCC7120 was resolved at 2.2 Å. Although its protein fold is similar to the protein folds of phycobiliproteins, the phycocyanobilin (PCB) chromophore adopts ZZZssa geometry, which is unknown among phycobiliproteins but characteristic for sensory photoreceptors (phytochromes and cyanobacteriochromes). However, chromophore photoisomerization is inhibited in L(CM) by tight packing. The ZZZssa geometry of the chromophore and π-π stacking with a neighboring Trp account for the functionally relevant extreme spectral red shift of L(CM). Exciton coupling is excluded by the large distance between two PCBs in a homodimer and by preservation of the spectral features in monomers. The structure also indicates a distinct flexibility that could be involved in quenching. The conclusions from the crystal structure are supported by femtosecond transient absorption spectra in solution.

PubMed: 26669441
DOI: 10.1073/pnas.1519177113

Experimental method

X-RAY DIFFRACTION (2.97 Å)