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PDB: 89346 results

3NAD
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BU of 3nad by Molmil
Crystal Structure of Phenolic Acid Decarboxylase from Bacillus pumilus UI-670
Descriptor: Ferulate decarboxylase, SULFATE ION
Authors:Matte, A, Grosse, S, Bergeron, H, Abokitse, K, Lau, P.C.K.
Deposit date:2010-06-01
Release date:2010-11-10
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Structural analysis of Bacillus pumilus phenolic acid decarboxylase, a lipocalin-fold enzyme.
Acta Crystallogr.,Sect.F, 66, 2010
7T73
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BU of 7t73 by Molmil
HIV-1 Envelope ApexGT2.2MUT in complex with PCT64.LMCA Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HIV Envelope ApexGT2.2MUT gp120, ...
Authors:Berndsen, Z.T, Ward, A.B.
Deposit date:2021-12-14
Release date:2022-09-28
Last modified:2023-07-05
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Human immunoglobulin repertoire analysis guides design of vaccine priming immunogens targeting HIV V2-apex broadly neutralizing antibody precursors.
Immunity, 55, 2022
8CKM
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BU of 8ckm by Molmil
Semaphorin-5A TSR 3-4 domains
Descriptor: Semaphorin-5A
Authors:Nagy, G.N, Duman, R, Harlos, K, El Omari, K, Wagner, A, Jones, E.Y.
Deposit date:2023-02-15
Release date:2024-02-28
Last modified:2024-09-11
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Structure and function of Semaphorin-5A glycosaminoglycan interactions.
Nat Commun, 15, 2024
7SVL
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BU of 7svl by Molmil
DPP9 IN COMPLEX WITH LIGAND ICeD-2
Descriptor: (2S)-2-amino-1-(1,3-dihydro-2H-isoindol-2-yl)-2-[(1r,4S)-4-(pyrrolidin-1-yl)cyclohexyl]ethan-1-one, Dipeptidyl peptidase 9
Authors:Lammens, A, Hollenstein, K, Klein, D.J.
Deposit date:2021-11-19
Release date:2022-10-05
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:A Phenotypic Screen Identifies Potent DPP9 Inhibitors Capable of Killing HIV-1 Infected Cells.
Acs Chem.Biol., 17, 2022
6NKC
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BU of 6nkc by Molmil
Crystal Structure of the Lipase Lip_vut1 from Goat Rumen metagenome.
Descriptor: 1,2-ETHANEDIOL, AZIDE ION, CHLORIDE ION, ...
Authors:Kim, Y, Welk, L, Mukendi, G, Nkhi, G, Motloi, T, Jedrzejczak, R, Feto, N, Joachimiak, A.
Deposit date:2019-01-07
Release date:2020-01-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.631 Å)
Cite:Crystal Structure of the Lipase Lip_vut1 from Goat Rumen metagenome.
To Be Published
4TXC
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BU of 4txc by Molmil
Crystal Structure of DAPK1 kinase domain in complex with a small molecule inhibitor
Descriptor: 1,2-ETHANEDIOL, 4-(3-{3-[(R)-{[2-(dimethylamino)ethyl]amino}(hydroxy)methyl]phenyl}imidazo[1,2-b]pyridazin-6-yl)-2-methoxyphenol, Death-associated protein kinase 1
Authors:Sorrell, F.J, Krojer, T, Wilbek, T.S, Skovgaard, T, Berthelsen, J, Dixon-Clarke, S, Chalk, R, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Stromgaard, K, Knapp, S.
Deposit date:2014-07-03
Release date:2014-07-23
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.951 Å)
Cite:Identification and characterization of a small-molecule inhibitor of death-associated protein kinase 1.
Chembiochem, 16, 2015
4TXI
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BU of 4txi by Molmil
Construct of MICAL-1 containing the monooxygenase and calponin homology domains
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Alqassim, S.S, Amzel, L.M, Bianchet, M.A.
Deposit date:2014-07-03
Release date:2016-01-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.309 Å)
Cite:Modulation of MICAL Monooxygenase Activity by its Calponin Homology Domain: Structural and Mechanistic Insights.
Sci Rep, 6, 2016
7BXV
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BU of 7bxv by Molmil
11A1 antibody-peptide complex
Descriptor: 1,2-ETHANEDIOL, Fab of the 11A1 antibody H chain, Fab of the 11A1 antibody L chain, ...
Authors:Irie, K, Irie, Y, Kita, A, Miki, K.
Deposit date:2020-04-21
Release date:2021-04-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:APOE epsilon 4 allele advances the age-dependent decline of amyloid beta clearance in the human cortex.
Biorxiv, 2022
4YZ1
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BU of 4yz1 by Molmil
Crystal Structure of Streptococcus pneumoniae NanC, apo structure.
Descriptor: Putative neuraminidase, SULFATE ION
Authors:Lukacik, P, Owen, D.O, Potter, J.A, Taylor, G.L, Walsh, M.A.
Deposit date:2015-03-24
Release date:2015-09-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Streptococcus pneumoniae NanC: STRUCTURAL INSIGHTS INTO THE SPECIFICITY AND MECHANISM OF A SIALIDASE THAT PRODUCES A SIALIDASE INHIBITOR.
J.Biol.Chem., 290, 2015
6NNA
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BU of 6nna by Molmil
Human Fatty Acid Synthase Psi/KR Tri-Domain with NADPH and Compound 22
Descriptor: 1,2-ETHANEDIOL, Fatty acid synthase,Fatty acid synthase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Toms, A.V, Martin, M.W.
Deposit date:2019-01-14
Release date:2019-02-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Discovery and optimization of novel piperazines as potent inhibitors of fatty acid synthase (FASN).
Bioorg. Med. Chem. Lett., 29, 2019
4ZFQ
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BU of 4zfq by Molmil
Structure of M. tuberculosis (3,3) L,D-Transpeptidase, LdtMt5. (Meropenen-adduct form)
Descriptor: (2S,3R,4S)-4-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid, DI(HYDROXYETHYL)ETHER, L,D-transpeptidase 5
Authors:Basta, L, Ghosh, A, Lamichhane, G, Bianchet, M.A.
Deposit date:2015-04-21
Release date:2015-09-02
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.799 Å)
Cite:Loss of a Functionally and Structurally Distinct ld-Transpeptidase, LdtMt5, Compromises Cell Wall Integrity in Mycobacterium tuberculosis.
J.Biol.Chem., 290, 2015
8A1G
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BU of 8a1g by Molmil
Structure of the SNX1-SNX5 complex
Descriptor: N-PROPANOL, Sorting nexin-1, Sorting nexin-5
Authors:Lopez-Robles, C, Scaramuzza, S, Astorga-Simon, E.N, Banos-Mateos, S, Vidaurrazaga, A, Rojas, A.L, Castano, D, Hierro, A.
Deposit date:2022-06-01
Release date:2023-06-14
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Architecture of the ESCPE-1 membrane coat.
Nat.Struct.Mol.Biol., 30, 2023
6WFZ
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BU of 6wfz by Molmil
Crystal structure of Fab399 in complex with NPNA3 peptide from circumsporozoite protein
Descriptor: Fab399 heavy chain, Fab399 light chain, NPNA3 peptide
Authors:Pholcharee, T, Oyen, D, Wilson, I.A.
Deposit date:2020-04-04
Release date:2020-07-29
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural and biophysical correlation of anti-NANP antibodies with in vivo protection against P. falciparum.
Nat Commun, 12, 2021
5OAE
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BU of 5oae by Molmil
Crystal Structure of tyrosinase from Bacillus megaterium with SVF inhibitor in the active site
Descriptor: 1-[4-[(4-fluorophenyl)methyl]piperidin-1-yl]ethanone, COPPER (II) ION, Tyrosinase
Authors:Deri, B, Gitto, R, Pazy Benhar, Y, Fishman, A.
Deposit date:2017-06-21
Release date:2018-04-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Targeting Tyrosinase: Development and Structural Insights of Novel Inhibitors Bearing Arylpiperidine and Arylpiperazine Fragments.
J. Med. Chem., 61, 2018
3NE7
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BU of 3ne7 by Molmil
Crystal structure of paia n-acetyltransferase from thermoplasma acidophilum in complex with coenzyme a
Descriptor: ACETYLTRANSFERASE, BETA-MERCAPTOETHANOL, COENZYME A, ...
Authors:Filippova, E.V, Minasov, G, Shuvalova, L, Kiryukhina, O, Clancy, S, Joachimiak, A, Anderson, F.W, Midwest Center for Structural Genomics (MCSG)
Deposit date:2010-06-08
Release date:2010-07-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the novel PaiA N-acetyltransferase from Thermoplasma acidophilum involved in the negative control of sporulation and degradative enzyme production.
Proteins, 79, 2011
6NPA
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BU of 6npa by Molmil
X-ray crystal structure of TmpB, (R)-1-hydroxy-2-trimethylaminoethylphosphonate oxygenase, with (R)-1-hydroxy-2-trimethylaminoethylphosphonate
Descriptor: (2R)-2-hydroxy-N,N,N-trimethyl-2-phosphonoethan-1-aminium, FE (II) ION, FE (III) ION, ...
Authors:Rajakovich, L.J, Mitchell, A.J, Boal, A.K.
Deposit date:2019-01-17
Release date:2019-03-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:A New Microbial Pathway for Organophosphonate Degradation Catalyzed by Two Previously Misannotated Non-Heme-Iron Oxygenases.
Biochemistry, 58, 2019
7OGT
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BU of 7ogt by Molmil
Folded elbow of cohesin
Descriptor: Structural maintenance of chromosomes protein 1, Structural maintenance of chromosomes protein 3
Authors:Lee, B.-G, Gonzalez Llamazares, A, Collier, J, Patele, N.J, Nasmyth, K.A, Lowe, J.
Deposit date:2021-05-07
Release date:2021-07-28
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (5.5 Å)
Cite:Folding of cohesin's coiled coil is important for Scc2/4-induced association with chromosomes.
Elife, 10, 2021
4YAK
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BU of 4yak by Molmil
Ca. Korarchaeum cryptofilum dinucleotide forming Acetyl-coenzyme A synthetase 1 in complex with coenzyme A, acetyl-coenzyme A and with phosphorylated phosphohistidine segment (site I orientation)
Descriptor: ACETYL COENZYME *A, COENZYME A, alpha subunit of Acyl-CoA synthetase (NDP forming), ...
Authors:Weisse, R.H.-J, Scheidig, A.J.
Deposit date:2015-02-17
Release date:2016-01-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.464 Å)
Cite:Structure of NDP-forming Acetyl-CoA synthetase ACD1 reveals a large rearrangement for phosphoryl transfer.
Proc.Natl.Acad.Sci.USA, 113, 2016
5NT7
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BU of 5nt7 by Molmil
Structure of the LOTUS domain of Oskar in complex with the C-terminal RecA-like domain of Vasa
Descriptor: ATP-dependent RNA helicase vasa, isoform A, Maternal effect protein oskar
Authors:Jeske, M, Ephrussi, A, Mueller, C.W.
Deposit date:2017-04-27
Release date:2017-05-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The LOTUS domain is a conserved DEAD-box RNA helicase regulator essential for the recruitment of Vasa to the germ plasm and nuage.
Genes Dev., 31, 2017
4Y3L
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BU of 4y3l by Molmil
Endothiapepsin in complex with fragment 205
Descriptor: ACETATE ION, DIMETHYL SULFOXIDE, Endothiapepsin, ...
Authors:Ehrmann, F.R, Huschmann, F.U, Heine, A, Klebe, G.
Deposit date:2015-02-10
Release date:2016-02-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Crystallographic Fragment Sreening of an Entire Library
To Be Published
4TW3
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BU of 4tw3 by Molmil
Insights into Substrate and Metal Binding from the Crystal Structure of Cyanobacterial Aldehyde Deformylating Oxygenase with Substrate Bound
Descriptor: 1,2-ETHANEDIOL, Aldehyde decarbonylase, FE (III) ION, ...
Authors:Buer, B.C, Paul, B, Das, D, Stuckey, J.A, Marsh, E.N.G.
Deposit date:2014-06-29
Release date:2014-10-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Insights into substrate and metal binding from the crystal structure of cyanobacterial aldehyde deformylating oxygenase with substrate bound.
Acs Chem.Biol., 9, 2014
6NPC
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BU of 6npc by Molmil
X-ray crystal structure of TmpA, 2-trimethylaminoethylphosphonate hydroxylase, with Fe, 2OG, and 2-trimethylaminoethylphosphonate
Descriptor: 2-OXOGLUTARIC ACID, FE (II) ION, N,N,N-trimethyl-2-phosphonoethan-1-aminium, ...
Authors:Rajakovich, L.J, Mitchell, A.J, Boal, A.K.
Deposit date:2019-01-17
Release date:2019-03-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A New Microbial Pathway for Organophosphonate Degradation Catalyzed by Two Previously Misannotated Non-Heme-Iron Oxygenases.
Biochemistry, 58, 2019
6O7R
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BU of 6o7r by Molmil
Nitrogenase MoFeP mutant F99Y, S188A from Azotobacter vinelandii in the dithionite reduced state
Descriptor: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, FE (III) ION, FE(8)-S(7) CLUSTER, ...
Authors:Rutledge, H.L, Williamson, L.M, Tezcan, F.A.
Deposit date:2019-03-08
Release date:2019-06-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Redox-Dependent Metastability of the Nitrogenase P-Cluster.
J.Am.Chem.Soc., 141, 2019
6RZ0
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BU of 6rz0 by Molmil
Crystal structure of Escherichia coli Glyoxalase II
Descriptor: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, CHLORIDE ION, GLYCEROL, ...
Authors:Skorupskaite, A, McDonough, M.A, Schofield, C.J.
Deposit date:2019-06-12
Release date:2020-07-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Crystal structure of Escherichia coli Glyoxalase II
To Be Published
4UAF
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BU of 4uaf by Molmil
Importin alpha 1 delta IBB in complex with Influenza PB2 nuclear localization domain
Descriptor: Importin subunit alpha-1, PHOSPHATE ION, Polymerase basic protein 2
Authors:Pumroy, R.A, Cingolani, G.
Deposit date:2014-08-08
Release date:2015-02-04
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.698 Å)
Cite:Molecular Determinants for Nuclear Import of Influenza A PB2 by Importin alpha Isoforms 3 and 7.
Structure, 23, 2015

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