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PDB: 88675 results

8E4K
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BU of 8e4k by Molmil
Co-crystal structure of Chaetomium glucosidase with compound 7
Descriptor: (2R,3R,4R,5S)-2-(hydroxymethyl)-1-[6-({(4M)-4-[2-(morpholin-4-yl)pyrimidin-4-yl]-2-nitrophenyl}amino)hexyl]piperidine-3,4,5-triol, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Karade, S.S, Mariuzza, R.A.
Deposit date:2022-08-18
Release date:2023-02-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure-Based Design of Potent Iminosugar Inhibitors of Endoplasmic Reticulum alpha-Glucosidase I with Anti-SARS-CoV-2 Activity.
J.Med.Chem., 66, 2023
8EB1
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BU of 8eb1 by Molmil
Chim2 - Intragenic antimicrobial peptide
Descriptor: Unconventional myosin-Ih, Transcription activator BRG1 intragenic antimicrobial chimeric peptide
Authors:de Freitas, T.V, Oliveira, A.L, Santos, M.A, Brand, G.D.
Deposit date:2022-08-30
Release date:2023-03-01
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Release of immunomodulatory peptides at bacterial membrane interfaces as a novel strategy to fight microorganisms.
J.Biol.Chem., 299, 2023
7P8V
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BU of 7p8v by Molmil
The structure of E. coli MutL bound to a 3' resected DNA end
Descriptor: DNA mismatch repair protein MutL, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Borsellini, A, Lamers, M.H.
Deposit date:2021-07-23
Release date:2022-06-29
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:MutL binds to 3' resected DNA ends and blocks DNA polymerase access.
Nucleic Acids Res., 50, 2022
6OST
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BU of 6ost by Molmil
RF2 pre-accommodated state bound Release complex 70S at 24ms
Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Fu, Z, Indrisiunaite, G, Kaledhonkar, S, Shah, B, Sun, M, Chen, B, Grassucci, R.A, Ehrenberg, M, Frank, J.
Deposit date:2019-05-02
Release date:2019-06-19
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:The structural basis for release-factor activation during translation termination revealed by time-resolved cryogenic electron microscopy.
Nat Commun, 10, 2019
6ON2
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BU of 6on2 by Molmil
Lon Protease from Yersinia pestis with Y2853 substrate
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent protease La, ...
Authors:Shin, M, Asmita, A, Puchades, C, Adjei, E, Wiseman, R.L, Karzai, A.W, Lander, G.C.
Deposit date:2019-04-19
Release date:2019-05-01
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural basis for distinct operational modes and protease activation in AAA+ protease Lon.
Sci Adv, 6, 2020
6ZW0
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BU of 6zw0 by Molmil
Connectase MJ0548 from Methanocaldococcus jannaschii in complex with an MtrA-derived peptide
Descriptor: 2-[3,6-bis(oxidanyl)-9~{H}-xanthen-9-yl]-5-[(6-oxidanyl-6-oxidanylidene-hexyl)carbamothioylamino]benzoic acid, Connectase MJ0548, Tetrahydromethanopterin S-methyltransferase subunit A
Authors:Fuchs, A.C.D, Hartmann, M.D.
Deposit date:2020-07-27
Release date:2021-06-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Archaeal Connectase is a specific and efficient protein ligase related to proteasome beta subunits.
Proc.Natl.Acad.Sci.USA, 118, 2021
7MWN
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BU of 7mwn by Molmil
An engineered PYL2-based WIN 55,212-2 synthetic cannabinoid sensor with a stabilized HAB1 variant
Descriptor: ACETATE ION, Abscisic acid receptor PYL2, CHLORIDE ION, ...
Authors:Peterson, F.C, Beltran, J, Bedewitz, M, Steiner, P.J, Cutler, S.R, Whitehead, T.A.
Deposit date:2021-05-17
Release date:2022-06-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.902 Å)
Cite:Rapid biosensor development using plant hormone receptors as reprogrammable scaffolds.
Nat.Biotechnol., 40, 2022
7A8U
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BU of 7a8u by Molmil
Crystal structure of sarcomeric protein FATZ-1 (d91-FATZ-1 construct) in complex with rod domain of alpha-actinin-2
Descriptor: Alpha-actinin-2, Myozenin-1
Authors:Sponga, A, Arolas, J.L, Rodriguez Chamorro, A, Mlynek, G, Hollerl, E, Schreiner, C, Pedron, M, Kostan, J, Ribeiro, E.A, Djinovic-Carugo, K.
Deposit date:2020-08-31
Release date:2021-06-30
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.802 Å)
Cite:Order from disorder in the sarcomere: FATZ forms a fuzzy but tight complex and phase-separated condensates with alpha-actinin.
Sci Adv, 7, 2021
6O8O
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BU of 6o8o by Molmil
Crystal Structure of C9S disulfide state of Sulfide-responsive transcriptional repressor (SqrR) from Rhodobacter capsulatus.
Descriptor: CHLORIDE ION, SULFATE ION, Transcriptional regulator, ...
Authors:Capdevila, D.A, Gonzalez-Gutierrez, G, Giedroc, D.P.
Deposit date:2019-03-11
Release date:2020-04-01
Last modified:2020-12-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for persulfide-sensing specificity in a transcriptional regulator.
Nat.Chem.Biol., 17, 2021
6ZQK
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BU of 6zqk by Molmil
HER2-binding scFv-Fab fusion 841
Descriptor: 1,2-ETHANEDIOL, 841 heavy chain, 841 light chain
Authors:Kast, F, Schwill, M, Stueber, J.C, Pfundstein, S, Nagy-Davidescu, G, Monne Rodriguez, J.M, Seehusen, F, Richter, C.P, Honegger, A, Hartmann, K.P, Weber, T.G, Kroener, F, Ernst, P, Piehler, J, Plueckthun, A.
Deposit date:2020-07-09
Release date:2021-06-30
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Engineering an anti-HER2 biparatopic antibody with a multimodal mechanism of action.
Nat Commun, 12, 2021
6MCD
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BU of 6mcd by Molmil
Crystal Structure of tris-thiolate Pb(II) complex with adjacent water in a de novo Three Stranded Coiled Coil Peptide
Descriptor: LEAD (II) ION, Pb(II)(GRAND Coil Ser L12CL16A)-, ZINC ION
Authors:Tolbert, A.E, Ruckthong, L, Stuckey, J.A, Pecoraro, V.L.
Deposit date:2018-08-31
Release date:2020-03-04
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Heteromeric three-stranded coiled coils designed using a Pb(II)(Cys)3template mediated strategy.
Nat.Chem., 12, 2020
7P4K
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BU of 7p4k by Molmil
Soluble epoxide hydrolase in complex with FL217
Descriptor: Bifunctional epoxide hydrolase 2, ~{N}-[[4-(cyclopropylsulfonylamino)-2-(trifluoromethyl)phenyl]methyl]-1-[(3-fluorophenyl)methyl]indole-5-carboxamide
Authors:Ni, X, Kramer, J.S, Lillich, F, Proschak, E, Chaikuad, A, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2021-07-11
Release date:2022-07-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structure-Based Design of Dual Partial Peroxisome Proliferator-Activated Receptor gamma Agonists/Soluble Epoxide Hydrolase Inhibitors.
J.Med.Chem., 64, 2021
6MCX
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BU of 6mcx by Molmil
INFLUENZA VIRUS NEURAMINIDASE SUBTYPE N9 (TERN) RECOMBINANT HEAD DOMAIN
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, GLYCEROL, ...
Authors:Streltsov, V.A, Schmidt, P, McKimm-Breschkin, J.
Deposit date:2018-09-02
Release date:2019-01-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of an Influenza A virus N9 neuraminidase with a tetrabrachion-domain stalk.
Acta Crystallogr.,Sect.F, 75, 2019
6O9V
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BU of 6o9v by Molmil
KirBac3.1 mutant at a resolution of 3.1 Angstroms
Descriptor: 1,1-Methanediyl Bismethanethiosulfonate, DECYLAMINE-N,N-DIMETHYL-N-OXIDE, Inward rectifier potassium channel Kirbac3.1, ...
Authors:Gulbis, J.M, Black, K.A, Miller, D.M.
Deposit date:2019-03-15
Release date:2020-05-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.094 Å)
Cite:A constricted opening in Kir channels does not impede potassium conduction.
Nat Commun, 11, 2020
6O9Z
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BU of 6o9z by Molmil
Electron cryo-microscopy of the eukaryotic translation initiation factor 2B bound to eukaryotic translation initiation factor 2 from Homo sapiens
Descriptor: Eukaryotic translation initiation factor 2 subunit 1, Translation initiation factor eIF-2B subunit alpha, Translation initiation factor eIF-2B subunit beta, ...
Authors:Nguyen, H.C, Kenner, L.R, Frost, A.S.
Deposit date:2019-03-15
Release date:2019-05-15
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:eIF2B-catalyzed nucleotide exchange and phosphoregulation by the integrated stress response.
Science, 364, 2019
6WZS
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BU of 6wzs by Molmil
Fusibacterium ulcerans ZTP riboswitch bound to m-1-pyridinyl AICA
Descriptor: 5-amino-1-(pyridin-3-yl)-1H-imidazole-4-carboxamide, Fusibacterium ulcerans ZTP riboswitch, MAGNESIUM ION, ...
Authors:Pichling, P, Jones, C.P, Ferre-D'Amare, A.R, Tran, B.
Deposit date:2020-05-14
Release date:2021-03-24
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.23 Å)
Cite:Parallel Discovery Strategies Provide a Basis for Riboswitch Ligand Design.
Cell Chem Biol, 27, 2020
7A8T
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BU of 7a8t by Molmil
Crystal structure of sarcomeric protein FATZ-1 (mini-FATZ-1 construct) in complex with rod domain of alpha-actinin-2
Descriptor: Alpha-actinin-2, Myozenin-1
Authors:Sponga, A, Arolas, J.L, Rodriguez Chamorro, A, Mlynek, G, Hollerl, E, Schreiner, C, Pedron, M, Kostan, J, Ribeiro, E.A, Djinovic-Carugo, K.
Deposit date:2020-08-31
Release date:2021-06-30
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Order from disorder in the sarcomere: FATZ forms a fuzzy but tight complex and phase-separated condensates with alpha-actinin.
Sci Adv, 7, 2021
6WZR
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BU of 6wzr by Molmil
Fusibacterium ulcerans ZTP riboswitch bound to p-1-pyridinyl AICA
Descriptor: 5-amino-1-(pyridin-4-yl)-1H-imidazole-4-carboxamide, Fusibacterium ulcerans ZTP riboswitch, MAGNESIUM ION, ...
Authors:Pichling, P, Jones, C.P, Ferre-D'Amare, A.R, Tran, B.
Deposit date:2020-05-14
Release date:2021-03-24
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Parallel Discovery Strategies Provide a Basis for Riboswitch Ligand Design.
Cell Chem Biol, 27, 2020
6OFQ
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BU of 6ofq by Molmil
ABC transporter-associated periplasmic binding protein DppA from Helicobacter pylori in complex with peptide STSA
Descriptor: Heme-binding protein A / AI-2 binding protein A, SER-THR-SER-ALA
Authors:Rahman, M.M, Machuca, M.A, Khan, M.F, Barlow, C.K, Schittenhelm, R.B, Roujeinikova, A.
Deposit date:2019-03-31
Release date:2019-08-21
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Molecular Basis of Unexpected Specificity of ABC Transporter-Associated Substrate-Binding Protein DppA from Helicobacter pylori.
J.Bacteriol., 201, 2019
7OXU
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BU of 7oxu by Molmil
VDR complex - calcitroic acid
Descriptor: Mediator of RNA polymerase II transcription subunit 1, Vitamin D3 receptor A, calcitroic acid
Authors:Rochel, N, Arnold, L.A.
Deposit date:2021-06-23
Release date:2022-07-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:VDR complex - calcitroic acid
To Be Published
6OKD
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BU of 6okd by Molmil
Crystal Structure of human transferrin receptor in complex with a cystine-dense peptide
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ...
Authors:Finton, K.A.K, Rupert, P.B, Strong, R.K.
Deposit date:2019-04-12
Release date:2020-04-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:A TfR-Binding Cystine-Dense Peptide Promotes Blood-Brain Barrier Penetration of Bioactive Molecules.
J.Mol.Biol., 432, 2020
7A00
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BU of 7a00 by Molmil
Crystal structure of Shank1 PDZ in complex with L6F mutant of the C-terminal hexapeptide from GKAP
Descriptor: L6F mutant of C-terminal hexapeptide from Guanylate kinase-associated protein, SH3 and multiple ankyrin repeat domains protein 1
Authors:Zsofia, H, Hetherington, K, Fruzsina, H, Edwards, T.A, Wilson, A.J.
Deposit date:2020-08-05
Release date:2021-07-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Query-guided protein-protein interaction inhibitor discovery.
Chem Sci, 12, 2021
6O5T
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BU of 6o5t by Molmil
Crystal Structure of VIM-2 with Compound 16
Descriptor: ACETATE ION, Beta-lactamase class B VIM-2, ZINC ION, ...
Authors:Akhtar, A, Chen, Y.
Deposit date:2019-03-04
Release date:2019-09-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Heteroaryl Phosphonates as Noncovalent Inhibitors of Both Serine- and Metallocarbapenemases.
J.Med.Chem., 62, 2019
8E84
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BU of 8e84 by Molmil
Human PCNA mutant- C148S
Descriptor: Proliferating cell nuclear antigen
Authors:Magrino, J, Page, B, Gaubitz, C, Kelch, B.A.
Deposit date:2022-08-25
Release date:2023-04-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:A thermosensitive PCNA allele underlies an ataxia-telangiectasia-like disorder.
J.Biol.Chem., 299, 2023
6OR7
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BU of 6or7 by Molmil
Structure of HIV-1 Reverse Transcriptase (RT) in complex with DNA AND (-)FTC-TP
Descriptor: DNA Primer 20-mer, DNA template 27-mer, MAGNESIUM ION, ...
Authors:Bertoletti, N, Chan, A.H, Anderson, K.S.
Deposit date:2019-04-29
Release date:2019-07-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Structural insights into the recognition of nucleoside reverse transcriptase inhibitors by HIV-1 reverse transcriptase: First crystal structures with reverse transcriptase and the active triphosphate forms of lamivudine and emtricitabine.
Protein Sci., 28, 2019

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