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PDB: 89111 results

4S3F
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IspG in complex with Inhibitor 8 (compound 1077)
Descriptor: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, FE3-S4 CLUSTER, but-3-yn-1-yl trihydrogen diphosphate
Authors:Quitterer, F, Frank, A, Wang, K, Rao, G, O'Dowd, B, Li, J, Guerra, F, Abdel-Azeim, S, Bacher, A, Eppinger, J, Oldfield, E, Groll, M.
Deposit date:2015-01-26
Release date:2015-04-29
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Atomic-Resolution Structures of Discrete Stages on the Reaction Coordinate of the [Fe4S4] Enzyme IspG (GcpE).
J.Mol.Biol., 427, 2015
4YWP
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BU of 4ywp by Molmil
Sucrose Binding Site in genetically engineered Carbonic anhydrase IX
Descriptor: Carbonic anhydrase 2, ZINC ION, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
Authors:Pinard, M.A, Aggarwal, M.
Deposit date:2015-03-20
Release date:2015-10-14
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:A sucrose-binding site provides a lead towards an isoform-specific inhibitor of the cancer-associated enzyme carbonic anhydrase IX.
Acta Crystallogr F Struct Biol Commun, 71, 2015
8V9G
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BU of 8v9g by Molmil
GES-5-meropenem complex
Descriptor: (4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid, 1,2-ETHANEDIOL, IODIDE ION, ...
Authors:Smith, C.A, Stewart, N.K, Vakulenko, S.B.
Deposit date:2023-12-08
Release date:2024-04-03
Last modified:2024-04-24
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Restricted Rotational Flexibility of the C5 alpha-Methyl-Substituted Carbapenem NA-1-157 Leads to Potent Inhibition of the GES-5 Carbapenemase.
Acs Infect Dis., 10, 2024
5IPK
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BU of 5ipk by Molmil
Structure of the R432A variant of Adeno-associated virus type 2 VLP
Descriptor: Capsid protein VP1
Authors:Drouin, L.M, Lins, B, Janssen, M.E, Bennet, A, Chipman, P, McKenna, R, Chen, W, Muzyczka, N, Cardone, G, Baker, T.S, Agbandje-McKenna, M.
Deposit date:2016-03-09
Release date:2016-07-20
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Cryo-electron Microscopy Reconstruction and Stability Studies of the Wild Type and the R432A Variant of Adeno-associated Virus Type 2 Reveal that Capsid Structural Stability Is a Major Factor in Genome Packaging.
J.Virol., 90, 2016
4YYX
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BU of 4yyx by Molmil
Crystal structure of the ZO-1 PDZ1 domain in complex with the 7-mer Claudin2 C-terminal tail
Descriptor: FORMIC ACID, Tight junction protein ZO-1 fused with Claudin-2 C-terminal
Authors:Nomme, J, Lavie, A.
Deposit date:2015-03-24
Release date:2015-04-01
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Structural Basis of a Key Factor Regulating the Affinity between the Zonula Occludens First PDZ Domain and Claudins.
J.Biol.Chem., 290, 2015
8V6M
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BU of 8v6m by Molmil
Inactivated-state cryo-EM structure of human TRPV3 in presence of tetrahydrocannabivarin (THCV) in cNW30 nanodiscs
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, SODIUM ION, Tetrahydrocannabivarin, ...
Authors:Nadezhdin, K.D, Neuberger, A, Sobolevsky, A.I.
Deposit date:2023-12-01
Release date:2024-04-17
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.63 Å)
Cite:TRPV3 activation by different agonists accompanied by lipid dissociation from the vanilloid site.
Sci Adv, 10, 2024
5XXM
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BU of 5xxm by Molmil
Crystal structure of GH3 beta-glucosidase from Bacteroides thetaiotaomicron in complex with gluconolactone
Descriptor: D-glucono-1,5-lactone, MAGNESIUM ION, Periplasmic beta-glucosidase, ...
Authors:Nakajima, M, Ishiguro, R, Tanaka, N, Abe, K, Maeda, T, Miyanaga, A, Takahash, Y, Sugimoto, N, Nakai, H, Taguchi, H.
Deposit date:2017-07-04
Release date:2017-12-13
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Function and structure relationships of a beta-1,2-glucooligosaccharide-degrading beta-glucosidase.
FEBS Lett., 591, 2017
6FLF
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BU of 6flf by Molmil
Deoxyguanylosuccinate synthase (DgsS) structure at 1.33 Angstrom resolution.
Descriptor: Adenylosuccinate synthetase
Authors:Sleiman, D, Loc'h, J, Haouz, A, Kaminski, P.A.
Deposit date:2018-01-25
Release date:2019-06-12
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:A third purine biosynthetic pathway encoded by aminoadenine-based viral DNA genomes.
Science, 372, 2021
8P4Z
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BU of 8p4z by Molmil
Crystal structure of the human CDK7 kinase domain in complex with LDC4297
Descriptor: 2-[(3R)-piperidin-3-yl]oxy-8-propan-2-yl-N-[(2-pyrazol-1-ylphenyl)methyl]pyrazolo[1,5-a][1,3,5]triazin-4-amine, Cyclin-dependent kinase 7, GLYCEROL, ...
Authors:Laursen, M, Caing-Carlsson, R, Houssari, R, Javadi, A, Kimbung, Y.R, Murina, V, Orozco-Rodriguez, J.M, Svensson, A, Welin, M, Logan, D, Svensson, B, Walse, B.
Deposit date:2023-05-23
Release date:2023-06-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystal structure of the human CDK7 kinase domain in complex with LDC4297
To Be Published
5V8L
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BU of 5v8l by Molmil
BG505 SOSIP.664 trimer in complex with broadly neutralizing HIV antibodies 3BNC117 and PGT145
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 3BNC117 antibody, ...
Authors:Lee, J.H, Ward, A.B.
Deposit date:2017-03-22
Release date:2017-05-03
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:A Broadly Neutralizing Antibody Targets the Dynamic HIV Envelope Trimer Apex via a Long, Rigidified, and Anionic beta-Hairpin Structure.
Immunity, 46, 2017
4TMU
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BU of 4tmu by Molmil
Crystal structure of RecQ catalytic core from C. sakazakii bound to DNA
Descriptor: DNA (29-MER), RecQ, ZINC ION
Authors:Manthei, K.A, Keck, J.L.
Deposit date:2014-06-02
Release date:2015-03-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural mechanisms of DNA binding and unwinding in bacterial RecQ helicases.
Proc.Natl.Acad.Sci.USA, 112, 2015
8V6L
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BU of 8v6l by Molmil
Open-state cryo-EM structure of human TRPV3 in presence of tetrahydrocannabivarin (THCV) in cNW30 nanodiscs
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, SODIUM ION, Tetrahydrocannabivarin, ...
Authors:Nadezhdin, K.D, Neuberger, A, Sobolevsky, A.I.
Deposit date:2023-12-01
Release date:2024-04-17
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.68 Å)
Cite:TRPV3 activation by different agonists accompanied by lipid dissociation from the vanilloid site.
Sci Adv, 10, 2024
6DK5
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BU of 6dk5 by Molmil
The X-ray crystal structure of human endothelin-1, a polypeptide hormone regulator of blood pressure
Descriptor: Endothelin-1
Authors:McPherson, A.
Deposit date:2018-05-28
Release date:2019-01-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The X-ray crystal structure of human endothelin 1, a polypeptide hormone regulator of blood pressure.
Acta Crystallogr F Struct Biol Commun, 75, 2019
6GR2
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BU of 6gr2 by Molmil
Structure of human galactokinase in complex with galactose and ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Galactokinase, SULFATE ION, ...
Authors:Bezerra, G.A, Mackinnon, S, Williams, E, Zhang, M, Arrowsmith, C, Edwards, A, Bountra, C, Lai, K, Yue, W.W, Structural Genomics Consortium (SGC)
Deposit date:2018-06-08
Release date:2019-06-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Structure of human galactokinase in complex with galactose and ADP
To Be Published
4YXW
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BU of 4yxw by Molmil
Bovine heart mitochondrial F1-ATPase inhibited by AMP-PNP and ADP in the presence of thiophosphate.
Descriptor: ATP synthase subunit alpha, mitochondrial, ATP synthase subunit beta, ...
Authors:Bason, J.V, Montgomery, M.G, Leslie, A.G.W, Walker, J.E.
Deposit date:2015-03-23
Release date:2015-05-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:How release of phosphate from mammalian F1-ATPase generates a rotary substep.
Proc.Natl.Acad.Sci.USA, 112, 2015
7KIY
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BU of 7kiy by Molmil
Plasmodium falciparum RhopH complex in soluble form
Descriptor: Cytoadherence linked asexual protein 3, High molecular weight rhoptry protein 3, High molecular weight rhoptry protein-2
Authors:Schureck, M.A, Darling, J.E, Merk, A, Subramaniam, S, Desai, S.A.
Deposit date:2020-10-25
Release date:2021-01-13
Method:ELECTRON MICROSCOPY (2.92 Å)
Cite:Malaria parasites use a soluble RhopH complex for erythrocyte invasion and an integral form for nutrient uptake.
Elife, 10, 2021
4RK7
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BU of 4rk7 by Molmil
Crystal structure of LacI family transcriptional regulator CCPA from Weissella paramesenteroides, Target EFI-512926, with bound sucrose
Descriptor: Glucose-resistance amylase regulator, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
Authors:Patskovsky, Y, Toro, R, Bhosle, R, Al Obaidi, N, Chamala, S, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Lafleur, J, Siedel, R.D, Hillerich, B, Love, J, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-10-11
Release date:2014-10-29
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of transcriptional regulator CCPA from Weissella paramesenteroides, Target EFI-512926
To be Published
6VVO
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BU of 6vvo by Molmil
Structure of the human clamp loader (Replication Factor C, RFC) bound to the sliding clamp (Proliferating Cell Nuclear Antigen, PCNA)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Gaubitz, C, Liu, X, Stone, N.P, Kelch, B.A.
Deposit date:2020-02-18
Release date:2020-02-26
Last modified:2020-03-25
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure of the human clamp loader bound to the sliding clamp: a further twist on AAA+ mechanism
Biorxiv, 2020
5H80
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BU of 5h80 by Molmil
Biotin Carboxylase domain of single-chain bacterial carboxylase
Descriptor: 1,2-ETHANEDIOL, Carboxylase
Authors:Hagmann, A, Hunkeler, M, Stuttfeld, E, Maier, T.
Deposit date:2015-12-23
Release date:2016-07-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Hybrid Structure of a Dynamic Single-Chain Carboxylase from Deinococcus radiodurans.
Structure, 24, 2016
8BJ9
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BU of 8bj9 by Molmil
X-ray structure of the CeuE Homologue from Parageobacillus thermoglucosidasius - 5LICAM complex.
Descriptor: ABC transporter, FE (III) ION, N,N'-pentane-1,5-diylbis(2,3-dihydroxybenzamide), ...
Authors:Blagova, E.V, Bennett, M, Booth, R, Dodson, E.J, Duhme-KLair, A.-K, Wilson, K.S.
Deposit date:2022-11-03
Release date:2023-07-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.069 Å)
Cite:Thermostable homologues of the periplasmic siderophore-binding protein CeuE from Geobacillus stearothermophilus and Parageobacillus thermoglucosidasius.
Acta Crystallogr D Struct Biol, 79, 2023
8V6K
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BU of 8v6k by Molmil
Apo-state cryo-EM structure of human TRPV3 in cNW30 nanodiscs
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, SODIUM ION, Transient receptor potential cation channel subfamily V member 3
Authors:Nadezhdin, K.D, Neuberger, A, Sobolevsky, A.I.
Deposit date:2023-12-01
Release date:2024-04-17
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (2.46 Å)
Cite:TRPV3 activation by different agonists accompanied by lipid dissociation from the vanilloid site.
Sci Adv, 10, 2024
8BNW
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BU of 8bnw by Molmil
X-ray structure of the CeuE Homologue from Parageobacillus thermoglucosidasius - apo form
Descriptor: ABC transporter, NICKEL (II) ION, SULFATE ION
Authors:Blagova, E.V, Bennett, M, Booth, R, Dodson, E.J, Duhme-KLair, A.-K, Wilson, K.S.
Deposit date:2022-11-14
Release date:2023-07-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.133 Å)
Cite:Thermostable homologues of the periplasmic siderophore-binding protein CeuE from Geobacillus stearothermophilus and Parageobacillus thermoglucosidasius.
Acta Crystallogr D Struct Biol, 79, 2023
7QES
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BU of 7qes by Molmil
human Connexin 26 at 55mm Hg PCO2, pH7.4: two masked subunits, class A
Descriptor: DODECYL-BETA-D-MALTOSIDE, Gap junction beta-2 protein, PHOSPHATIDYLETHANOLAMINE
Authors:Brotherton, D.H, Cameron, A.D, Savva, C.G, Ragan, T.J.
Deposit date:2021-12-03
Release date:2022-06-15
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Conformational changes and CO 2 -induced channel gating in connexin26.
Structure, 30, 2022
6DMU
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BU of 6dmu by Molmil
PI(4,5)P2 bound full-length rbTRPV5
Descriptor: Transient receptor potential cation channel subfamily V member 5, [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate
Authors:Hughes, T.E.T, Pumroy, R.A, Moiseenkova-Bell, V.Y.
Deposit date:2018-06-05
Release date:2018-10-24
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural insights on TRPV5 gating by endogenous modulators.
Nat Commun, 9, 2018
5Y30
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BU of 5y30 by Molmil
Crystal structure of LGI1 LRR domain
Descriptor: Leucine-rich glioma-inactivated protein 1
Authors:Yamagata, A, Fukai, S.
Deposit date:2017-07-27
Release date:2018-05-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.781 Å)
Cite:Structural basis of epilepsy-related ligand-receptor complex LGI1-ADAM22.
Nat Commun, 9, 2018

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