Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6VNW
DownloadVisualize
BU of 6vnw by Molmil
Cryo-EM structure of apo-BBSome
Descriptor: BBS1 domain-containing protein, Bardet-Biedl syndrome 18 protein, Bardet-Biedl syndrome 2 protein homolog, ...
Authors:Yang, S, Walz, T, Nachury, M, Chou, H.
Deposit date:2020-01-29
Release date:2020-07-01
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.44 Å)
Cite:Near-atomic structures of the BBSome reveal the basis for BBSome activation and binding to GPCR cargoes.
Elife, 9, 2020
6VOA
DownloadVisualize
BU of 6voa by Molmil
Cryo-EM structure of the BBSome-ARL6 complex
Descriptor: ADP-ribosylation factor-like protein 6, BBS1 domain-containing protein, Bardet-Biedl syndrome 18 protein, ...
Authors:Yang, S, Walz, T, Nachury, M.V.
Deposit date:2020-01-30
Release date:2020-06-24
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Near-atomic structures of the BBSome reveal the basis for BBSome activation and binding to GPCR cargoes.
Elife, 9, 2020
2KAP
DownloadVisualize
BU of 2kap by Molmil
Solution structure of DLC1-SAM
Descriptor: Rho GTPase-activating protein 7
Authors:Yang, S, Yang, D.
Deposit date:2008-11-12
Release date:2009-10-20
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Characterization of DLC1-SAM equilibrium unfolding at the amino acid residue level
Biochemistry, 48, 2009
3L43
DownloadVisualize
BU of 3l43 by Molmil
Crystal structure of the dynamin 3 GTPase domain bound with GDP
Descriptor: Dynamin-3, GUANOSINE-5'-DIPHOSPHATE, UNKNOWN ATOM OR ION
Authors:Yang, S, Tempel, W, Tong, Y, Nedyalkova, L, Guan, X, Crombet, L, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2009-12-18
Release date:2010-01-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Crystal structure of the dynamin 3 GTPase domain bound with GDP
to be published
6BD4
DownloadVisualize
BU of 6bd4 by Molmil
Crystal structure of human apo-Frizzled4 receptor
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Frizzled-4/Rubredoxin chimeric protein, OLEIC ACID, ...
Authors:Yang, S, Wu, Y, Pu, M, Chen, Y, Dong, S, Guo, Y, Han, G.Y, Stevens, R.C, Zhao, S, Xu, F.
Deposit date:2017-10-21
Release date:2018-08-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the Frizzled 4 receptor in a ligand-free state.
Nature, 560, 2018
5JJY
DownloadVisualize
BU of 5jjy by Molmil
Crystal structure of SETD2 bound to histone H3.3 K36M peptide
Descriptor: Histone H3.3, Histone-lysine N-methyltransferase SETD2, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Yang, S, Zheng, X, Li, H.
Deposit date:2016-04-25
Release date:2016-11-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.053 Å)
Cite:Molecular basis for oncohistone H3 recognition by SETD2 methyltransferase
Genes Dev., 30, 2016
2KET
DownloadVisualize
BU of 2ket by Molmil
solution structure of BMAP-27
Descriptor: Cathelicidin-6
Authors:Yang, S, Jung, H, Kim, J.
Deposit date:2009-02-03
Release date:2009-08-04
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:solution structure of BMAP-27
To be Published
5XBZ
DownloadVisualize
BU of 5xbz by Molmil
Crystal structure of GH family 81 beta-1,3-glucanase from Rhizomucr miehei complexed with laminaripentaose
Descriptor: Endo-beta-1,3-glucanase, beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose, beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose, ...
Authors:Yang, S, Qin, Z, Zhou, P, Yan, Q, Jiang, Z.
Deposit date:2017-03-21
Release date:2018-03-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Catalytic mechanism of glycoside hydrolase family 81 beta-1,3-glucanase
To Be Published
7SC5
DownloadVisualize
BU of 7sc5 by Molmil
Cytoplasmic tail deleted HIV Env trimer in nanodisc
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ...
Authors:Yang, S, Walz, T.
Deposit date:2021-09-27
Release date:2022-11-09
Last modified:2023-02-22
Method:ELECTRON MICROSCOPY (3.88 Å)
Cite:Dynamic HIV-1 spike motion creates vulnerability for its membrane-bound tripod to antibody attack.
Nat Commun, 13, 2022
7SD3
DownloadVisualize
BU of 7sd3 by Molmil
Cytoplasmic tail deleted HIV-1 Env bound with three 4E10 Fabs
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4E10 Fab heavy chain, ...
Authors:Yang, S, Walz, T.
Deposit date:2021-09-29
Release date:2022-11-09
Last modified:2023-02-22
Method:ELECTRON MICROSCOPY (3.67 Å)
Cite:Dynamic HIV-1 spike motion creates vulnerability for its membrane-bound tripod to antibody attack.
Nat Commun, 13, 2022
3UX9
DownloadVisualize
BU of 3ux9 by Molmil
Structural insights into a human anti-IFN antibody exerting therapeutic potential for systemic lupus erythematosus
Descriptor: Interferon alpha-1/13, ScFv antibody
Authors:Ouyang, S, Zhao, L.X, Liang, W, Shaw, N, Liu, Z.-J, Liang, M.-F.
Deposit date:2011-12-04
Release date:2012-02-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural insights into a human anti-IFN antibody exerting therapeutic potential for systemic lupus erythematosus
J.Mol.Med., 2012
4EF4
DownloadVisualize
BU of 4ef4 by Molmil
Crystal structure of STING CTD complex with c-di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), CALCIUM ION, Transmembrane protein 173
Authors:Ouyang, S, Ru, H, Shaw, N, Jiang, Y, Niu, F, Zhu, Y, Qiu, W, Li, Y, Liu, Z.-J.
Deposit date:2012-03-29
Release date:2012-05-16
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.147 Å)
Cite:Structural analysis of the STING adaptor protein reveals a hydrophobic dimer interface and mode of cyclic di-GMP binding
Immunity, 36, 2012
4EF5
DownloadVisualize
BU of 4ef5 by Molmil
Crystal structure of STING CTD
Descriptor: Transmembrane protein 173
Authors:Ouyang, S, Ru, H, Shaw, N, Jiang, Y, Niu, F, Zhu, Y, Qiu, W, Li, Y, Liu, Z.-J.
Deposit date:2012-03-29
Release date:2012-05-16
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structural analysis of the STING adaptor protein reveals a hydrophobic dimer interface and mode of cyclic di-GMP binding
Immunity, 36, 2012
8IPJ
DownloadVisualize
BU of 8ipj by Molmil
Crystal structure of the Legionella effector protein MavL with ADPR-Ub
Descriptor: MavL, Ubiquitin, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE
Authors:Ouyang, S, Guan, H.
Deposit date:2023-03-14
Release date:2024-03-20
Method:X-RAY DIFFRACTION (2.003 Å)
Cite:Crystal structure of the Legionella effector protein MavL with ADPR-Ub
To Be Published
8IPW
DownloadVisualize
BU of 8ipw by Molmil
The sturecture of Legionella effector protein MavL with ADPR
Descriptor: MavL, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE
Authors:Ouyang, S, Hongxin, G.
Deposit date:2023-03-15
Release date:2024-03-20
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:The sturecture of Legionella effector protein MavL with ADPR
To Be Published
7WQY
DownloadVisualize
BU of 7wqy by Molmil
Crystal structure of grass carp ARF1-GDP complex
Descriptor: ARF1, GUANOSINE-5'-DIPHOSPHATE
Authors:Ouyang, S, Chang, M, Li, P.
Deposit date:2022-01-26
Release date:2023-03-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of grass carp ARF1
To Be Published
7DMS
DownloadVisualize
BU of 7dms by Molmil
A Fe(II)-binding effector of Yersinia pseudotuberculosis
Descriptor: Fe(II)-binding effector
Authors:Ouyang, S, Hongxin, G.
Deposit date:2020-12-07
Release date:2021-12-08
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:A Fe(II)-binding effector of Yersinia pseudotuberculosis
To Be Published
4WY5
DownloadVisualize
BU of 4wy5 by Molmil
Structural analysis of two fungal esterases from Rhizomucor miehei explaining their substrate specificity
Descriptor: Esterase, SULFATE ION
Authors:Qin, Z, Yang, S, Duan, X, Yan, Q, Jiang, Z.
Deposit date:2014-11-15
Release date:2015-07-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Structural insights into the substrate specificity of two esterases from the thermophilic Rhizomucor miehei
J.Lipid Res., 56, 2015
2GYT
DownloadVisualize
BU of 2gyt by Molmil
Solution structure of the SAM (sterile alpha motif) domain of DLC1 (deleted in liver cancer 1)
Descriptor: Deleted in liver cancer 1 protein, isoform 2
Authors:Yang, S.
Deposit date:2006-05-10
Release date:2007-04-24
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:The SAM domain of the RhoGAP DLC1 binds EF1A1 to regulate cell migration
J.Cell.Sci., 122, 2009
5JLE
DownloadVisualize
BU of 5jle by Molmil
Crystal structure of SETD2 bound to SAH
Descriptor: Histone-lysine N-methyltransferase SETD2, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION
Authors:Li, H, Yang, S, Zheng, X.
Deposit date:2016-04-27
Release date:2016-11-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular basis for oncohistone H3 recognition by SETD2 methyltransferase
Genes Dev., 30, 2016
5JLB
DownloadVisualize
BU of 5jlb by Molmil
Crystal structure of SETD2 bound to histone H3.3 K36I peptide
Descriptor: GLYCEROL, Histone H3.3, Histone-lysine N-methyltransferase SETD2, ...
Authors:Li, H, Yang, S.
Deposit date:2016-04-26
Release date:2016-11-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Molecular basis for oncohistone H3 recognition by SETD2 methyltransferase
Genes Dev., 30, 2016
4WY8
DownloadVisualize
BU of 4wy8 by Molmil
Structural analysis of two fungal esterases from Rhizomucor miehei explaining their substrate specificity
Descriptor: esterase
Authors:Qin, Z, Yang, S, Duan, X, Yan, Q, Jiang, Z.
Deposit date:2014-11-16
Release date:2015-07-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Structural insights into the substrate specificity of two esterases from the thermophilic Rhizomucor miehei
J.Lipid Res., 56, 2015
5XDM
DownloadVisualize
BU of 5xdm by Molmil
Structure of the C-terminal domain of E. coli MinC at 3.0 angstrom resolution
Descriptor: Septum site-determining protein MinC
Authors:Zheng, J, Shen, Q, Yang, S.
Deposit date:2017-03-28
Release date:2018-02-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.004 Å)
Cite:Characterization of C-terminal structure of MinC and its implication in evolution of bacterial cell division
Sci Rep, 7, 2017
6J9J
DownloadVisualize
BU of 6j9j by Molmil
crystal structure of SESTD2 in complex with H3.3S31phK36M peptide
Descriptor: H3.3S31phK36M(29-42), Histone-lysine N-methyltransferase SETD2, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Yang, S, Li, H.T.
Deposit date:2019-01-23
Release date:2020-02-26
Last modified:2020-08-12
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Histone H3.3 phosphorylation amplifies stimulation-induced transcription.
Nature, 583, 2020
8H5D
DownloadVisualize
BU of 8h5d by Molmil
Crystal structure of YojK mutant in complex with UDP
Descriptor: GLYCEROL, Glycosyltransferase, URIDINE-5'-DIPHOSPHATE
Authors:Hou, X.D, Yang, S, Yin, D.J, Rao, Y.J.
Deposit date:2022-10-12
Release date:2023-10-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Improving the Thermostability of Glycosyltransferase YojK by Targeting Mutagenesis for Highly Efficient Biosynthesis of Rebaudioside D
To Be Published

222036

PDB entries from 2024-07-03

PDB statisticsPDBj update infoContact PDBjnumon