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5OPH
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BU of 5oph by Molmil
G-quadruplex structure of DNA oligonucleotide containing GGGGCC repeats linked to ALS and FTD
分子名称: DNA (5'-D(*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*(BGM)P*G)-3')
著者Brcic, J, Plavec, J.
登録日2017-08-09
公開日2018-08-29
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献NMR structure of a G-quadruplex formed by four d(G4C2) repeats: insights into structural polymorphism.
Nucleic Acids Res., 46, 2018
5M1W
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BU of 5m1w by Molmil
Structure of a stable G-hairpin
分子名称: DNA (5'-D(*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*G)-3')
著者Gajarsky, M, Zivkovic, M.L, Stadlbauer, P, Pagano, B, Fiala, R, Amato, J, Tomaska, L, Sponer, J, Plavec, J, Trantirek, L.
登録日2016-10-11
公開日2017-03-01
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure of a Stable G-Hairpin.
J. Am. Chem. Soc., 139, 2017
6GH0
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BU of 6gh0 by Molmil
Two-quartet kit* G-quadruplex is formed via double-stranded pre-folded structure
分子名称: DNA (5'-D(*GP*GP*CP*GP*AP*GP*GP*AP*GP*GP*GP*GP*CP*GP*TP*GP*GP*CP*CP*GP*GP*C)-3')
著者Kotar, A, Rigo, R, Sissi, C, Plavec, J.
登録日2018-05-04
公開日2019-01-09
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Two-quartet kit* G-quadruplex is formed via double-stranded pre-folded structure.
Nucleic Acids Res., 47, 2019
5LIG
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BU of 5lig by Molmil
G-Quadruplex formed at the 5'-end of NHEIII_1 Element in human c-MYC promoter bound to triangulenium based fluorescence probe DAOTA-M2
分子名称: 8,12-bis(2-morpholinoethyl)-8H-benzo[ij]xantheno[1,9,8-cdef][2,7]naphthyridin-12-iumhexafluorophosphate, DNA (5'-D(*TP*AP*GP*GP*GP*AP*GP*GP*GP*TP*AP*GP*GP*GP*AP*GP*GP*GP*T)-3')
著者Kotar, A, Wang, B, Shivalingam, A, Gonzalez-Garcia, J, Vilar, R, Plavec, J.
登録日2016-07-14
公開日2016-09-14
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献NMR Structure of a Triangulenium-Based Long-Lived Fluorescence Probe Bound to a G-Quadruplex.
Angew.Chem.Int.Ed.Engl., 55, 2016
8C7B
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BU of 8c7b by Molmil
Slow cation movements within tetramolecular G-quadruplex: vacant cation binding sites in addition to all syn G-quartet
分子名称: DNA (5'-D(*GP*GP*GP*GP*CP*C)-3')
著者Wang, B, Zalar, M, Plavec, J, Sket, P.
登録日2023-01-14
公開日2023-11-22
実験手法SOLUTION NMR
主引用文献Insight into Tetramolecular DNA G-Quadruplexes Associated with ALS and FTLD: Cation Interactions and Formation of Higher-Ordered Structure.
Int J Mol Sci, 24, 2023
8C7A
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BU of 8c7a by Molmil
Slow cation movements within tetramolecular G-quadruplex: vacant cation binding sites in addition to all syn G-quartet
分子名称: DNA (5'-D(*GP*GP*GP*GP*CP*C)-3')
著者Wang, B, Zalar, M, Plavec, J, Sket, P.
登録日2023-01-14
公開日2023-11-22
実験手法SOLUTION NMR
主引用文献Insight into Tetramolecular DNA G-Quadruplexes Associated with ALS and FTLD: Cation Interactions and Formation of Higher-Ordered Structure.
Int J Mol Sci, 24, 2023
5NYS
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BU of 5nys by Molmil
M2 G-quadruplex dilute solution
分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*AP*CP*GP*GP*GP*CP*GP*GP*GP*CP*AP*GP*GP*GP*T)-3')
著者Trajkovski, M, Plavec, J, Endoh, T, Tateishi-Karimata, H, Sugimoto, N.
登録日2017-05-11
公開日2018-04-11
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Pursuing origins of (poly)ethylene glycol-induced G-quadruplex structural modulations.
Nucleic Acids Res., 46, 2018
5NYT
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BU of 5nyt by Molmil
M2 G-quadruplex 20 wt% ethylene glycol
分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*AP*CP*GP*GP*GP*CP*GP*GP*GP*CP*AP*GP*GP*GP*T)-3')
著者Trajkovski, M, Plavec, J, Endoh, T, Tateishi-Karimata, H, Sugimoto, N.
登録日2017-05-11
公開日2018-04-11
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Pursuing origins of (poly)ethylene glycol-induced G-quadruplex structural modulations.
Nucleic Acids Res., 46, 2018
5O4D
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BU of 5o4d by Molmil
G-quadruplex of Human papillomavirus type 52
分子名称: DNA (5'-D(*GP*GP*GP*TP*AP*GP*GP*GP*CP*AP*GP*GP*GP*GP*AP*CP*AP*CP*AP*GP*GP*GP*T)-3')
著者Marusic, M, Plavec, J.
登録日2017-05-29
公開日2018-06-13
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Towards Understanding of Polymorphism of the G-rich Region of Human Papillomavirus Type 52.
Molecules, 24, 2019
5NYU
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BU of 5nyu by Molmil
M2 G-quadruplex 10 wt% PEG8000
分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*AP*CP*GP*GP*GP*CP*GP*GP*GP*CP*AP*GP*GP*GP*T)-3')
著者Trajkovski, M, Plavec, J, Endoh, T, Tateishi-Karimata, H, Sugimoto, N.
登録日2017-05-11
公開日2018-04-11
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Pursuing origins of (poly)ethylene glycol-induced G-quadruplex structural modulations.
Nucleic Acids Res., 46, 2018
5L6R
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BU of 5l6r by Molmil
PrP226* - Solution-state NMR structure of truncated human prion protein
分子名称: Major prion protein
著者Kovac, V, Zupancic, B, Ilc, G, Curin Serbec, V, Plavec, J.
登録日2016-05-31
公開日2016-10-05
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Truncated prion protein PrP226* - A structural view on its role in amyloid disease.
Biochem. Biophys. Res. Commun., 484, 2017
5LQG
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BU of 5lqg by Molmil
A two-quartet G-quadruplex formed by human telomere in KCl solution at neutral pH
分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*G)-3')
著者Galer, P, Wang, B, Sket, P, Plavec, J.
登録日2016-08-17
公開日2018-06-13
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Reversible pH Switch of Two-Quartet G-Quadruplexes Formed by Human Telomere.
Angew.Chem.Int.Ed.Engl., 55, 2016
5M2L
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BU of 5m2l by Molmil
Structure of DNA tetrameric AGCGA-quadruplex adopted by 15-mer d(GCGAGGGAGCGAGGG), VK34, oligonucleotide found in regulatory region of the PLEKHG3 human gene
分子名称: DNA (5'-D(*GP*CP*GP*AP*GP*GP*GP*AP*GP*CP*GP*AP*GP*GP*G)-3')
著者Kocman, V, Plavec, J.
登録日2016-10-13
公開日2017-05-31
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Tetrahelical structural family adopted by AGCGA-rich regulatory DNA regions.
Nat Commun, 8, 2017
5LQH
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BU of 5lqh by Molmil
A two-quartet G-quadruplex formed by human telomere in KCl solution at pH 5.0
分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*G)-3')
著者Galer, P, Wang, B, Sket, P, Plavec, J.
登録日2016-08-17
公開日2018-01-17
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Reversible pH Switch of Two-Quartet G-Quadruplexes Formed by Human Telomere.
Angew.Chem.Int.Ed.Engl., 55, 2016
5M1L
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BU of 5m1l by Molmil
Structure of DNA AGCGA-quadruplex adopted by 15-mer d(GCGAGGGAGCGAGGG), VK34, oligonucleotide found in regulatory region of the PLEKHG3 human gene
分子名称: DNA (5'-D(*GP*CP*GP*AP*GP*GP*GP*AP*GP*CP*GP*AP*GP*GP*G)-3')
著者Kocman, V, Plavec, J.
登録日2016-10-09
公開日2017-05-31
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Tetrahelical structural family adopted by AGCGA-rich regulatory DNA regions.
Nat Commun, 8, 2017
5LSN
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BU of 5lsn by Molmil
SINEB2 element of the long non-coding RNA activator of translation AS Uchl1
分子名称: RNA (29-MER)
著者Podbevsek, P, Plavec, J.
登録日2016-09-05
公開日2017-09-20
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural determinants of the SINE B2 element embedded in the long non-coding RNA activator of translation AS Uchl1.
Sci Rep, 8, 2018
5M4W
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BU of 5m4w by Molmil
Structure of DNA AGCGA-quadruplex adopted by 15-mer oligonucleotide found in regulatory region of the PLEKHG3 human gene with G11 to I11 mutation, d(GCGAGGGAGCIAGGG),VK34_I11
分子名称: DNA (5'-D(*GP*CP*GP*AP*GP*GP*GP*AP*GP*CP*IP*AP*GP*GP*G)-3')
著者Kocman, V, Plavec, J.
登録日2016-10-19
公開日2017-05-31
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Tetrahelical structural family adopted by AGCGA-rich regulatory DNA regions.
Nat Commun, 8, 2017
5LKN
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BU of 5lkn by Molmil
NMR solution structure of human FNIII domain 2 of NCAM
分子名称: Neural cell adhesion molecule 1
著者Slapsak, U, Salzano, G, Amin, L, Abskharon, R.N.N, Ilc, G, Zupancic, B, Biljan, I, Plavec, J, Giachin, G, Legname, G.
登録日2016-07-22
公開日2016-09-14
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献The N Terminus of the Prion Protein Mediates Functional Interactions with the Neuronal Cell Adhesion Molecule (NCAM) Fibronectin Domain.
J.Biol.Chem., 291, 2016
5MTA
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BU of 5mta by Molmil
G-quadruplex formed within promoters of Plasmodium falciparum B var genes
分子名称: UpsB-Q-1, DNA (34-MER)
著者Juribasic Kulcsar, M, Plavec, J.
登録日2017-01-09
公開日2018-02-28
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Stabilizing interactions in long-loop G-quadruplex formed within promoters of Plasmodium falciparum B var genes
To Be Published
5MTG
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BU of 5mtg by Molmil
G-quadruplex formed within promoters of Plasmodium falciparum B var genes - form I
分子名称: UpsB-Q-1 DNA (34-MER)
著者Juribasic Kulcsar, M, Plavec, J.
登録日2017-01-09
公開日2018-02-28
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Stabilizing interactions in long-loop G-quadruplex formed within promoters of Plasmodium falciparum B var genes
To Be Published
2N2D
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BU of 2n2d by Molmil
Structure of DNA G-quadruplex adopted by ALS and FTD related GGGGCC repeat with G21 to Br-G21 substitution
分子名称: DNA (5'-D(*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*(BGM)P*G)-3')
著者Brcic, J, Plavec, J.
登録日2015-05-06
公開日2015-09-23
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution structure of a DNA quadruplex containing ALS and FTD related GGGGCC repeat stabilized by 8-bromodeoxyguanosine substitution.
Nucleic Acids Res., 43, 2015
2M53
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G-rich VEGF aptamer with LNA modifications
分子名称: G-rich VEGF aptamer
著者Marusic, M, Veedu, R.N, Plavec, J.
登録日2013-02-13
公開日2013-08-28
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献G-rich VEGF aptamer with locked and unlocked nucleic acid modifications exhibits a unique G-quadruplex fold.
Nucleic Acids Res., 41, 2013
2JXV
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BU of 2jxv by Molmil
Solution structure of a let-7 miRNA:lin-41 mRNA complex from C. elegans
分子名称: RNA (33-MER)
著者Cevec, M, Thibaudeau, C, Plavec, J.
登録日2007-11-30
公開日2008-04-29
最終更新日2022-03-16
実験手法SOLUTION NMR
主引用文献Solution structure of a let-7 miRNA:lin-41 mRNA complex from C. elegans.
Nucleic Acids Res., 36, 2008
2KUN
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BU of 2kun by Molmil
Three dimensional structure of HuPrP(90-231 M129 Q212P)
分子名称: Major prion protein
著者Ilc, G, Giachin, G, Jaremko, M, Jaremko, L, Zhukov, I, Plavec, J, Legname, G, Benetti, F.
登録日2010-02-23
公開日2010-08-25
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献NMR structure of the human prion protein with the pathological Q212P mutation reveals unique structural features.
Plos One, 5, 2010
2KPV
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NMR model of the first let-7 miRNA complementary site (LCS1) in 3'-UTR of lin-41 mRNA from C. elegans
分子名称: RNA (34-MER)
著者Cevec, M, Thibaudeau, C, Plavec, J.
登録日2009-10-20
公開日2010-08-04
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献NMR structure of the let-7 miRNA interacting with the site LCS1 of lin-41 mRNA from Caenorhabditis elegans.
Nucleic Acids Res., 38, 2010

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