Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8D3Y
DownloadVisualize
BU of 8d3y by Molmil
Human alpha3 Na+/K+-ATPase in its exoplasmic side-open state
Descriptor: FXYD domain-containing ion transport regulator 6, Sodium/potassium-transporting ATPase subunit alpha-3, Sodium/potassium-transporting ATPase subunit beta-1
Authors:Nguyen, P.T, Bai, X.
Deposit date:2022-06-01
Release date:2022-09-21
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural basis for gating mechanism of the human sodium-potassium pump.
Nat Commun, 13, 2022
8D3X
DownloadVisualize
BU of 8d3x by Molmil
Human alpha3 Na+/K+-ATPase in its K+-occluded state
Descriptor: FXYD domain-containing ion transport regulator 6, Sodium/potassium-transporting ATPase subunit alpha-3, Sodium/potassium-transporting ATPase subunit beta-1, ...
Authors:Nguyen, P.T, Bai, X.
Deposit date:2022-06-01
Release date:2022-09-21
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural basis for gating mechanism of the human sodium-potassium pump.
Nat Commun, 13, 2022
8D3U
DownloadVisualize
BU of 8d3u by Molmil
Human alpha3 Na+/K+-ATPase in its Na+-occluded state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, FXYD domain-containing ion transport regulator 6, Sodium/potassium-transporting ATPase subunit alpha-3, ...
Authors:Nguyen, P.T, Bai, X.
Deposit date:2022-06-01
Release date:2022-09-21
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural basis for gating mechanism of the human sodium-potassium pump.
Nat Commun, 13, 2022
8D3W
DownloadVisualize
BU of 8d3w by Molmil
Human alpha3 Na+/K+-ATPase in its AMPPCP-bound cytoplasmic side-open state
Descriptor: FXYD domain-containing ion transport regulator 6, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, Sodium/potassium-transporting ATPase subunit alpha-3, ...
Authors:Nguyen, P.T, Bai, X.
Deposit date:2022-06-01
Release date:2022-09-21
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural basis for gating mechanism of the human sodium-potassium pump.
Nat Commun, 13, 2022
8D3V
DownloadVisualize
BU of 8d3v by Molmil
Human alpha3 Na+/K+-ATPase in its cytoplasmic side-open state
Descriptor: FXYD domain-containing ion transport regulator 6, Sodium/potassium-transporting ATPase subunit alpha-3, Sodium/potassium-transporting ATPase subunit beta-1
Authors:Nguyen, P.T, Bai, X.
Deposit date:2022-06-01
Release date:2022-09-21
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural basis for gating mechanism of the human sodium-potassium pump.
Nat Commun, 13, 2022
3J8H
DownloadVisualize
BU of 3j8h by Molmil
Structure of the rabbit ryanodine receptor RyR1 in complex with FKBP12 at 3.8 Angstrom resolution
Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP1A, Ryanodine receptor 1, ZINC ION
Authors:Yan, Z, Bai, X, Yan, C, Wu, J, Scheres, S.H.W, Shi, Y, Yan, N.
Deposit date:2014-10-26
Release date:2014-12-10
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure of the rabbit ryanodine receptor RyR1 at near-atomic resolution.
Nature, 517, 2015
6U3U
DownloadVisualize
BU of 6u3u by Molmil
Crystal Structure of Shiga Toxin 2K
Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Shiga toxin 2K subunit A, ...
Authors:Zhang, Y.Z, He, X.H.
Deposit date:2019-08-22
Release date:2020-07-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.287 Å)
Cite:Structural and Functional Characterization of Stx2k, a New Subtype of Shiga Toxin 2.
Microorganisms, 8, 2019
3BXW
DownloadVisualize
BU of 3bxw by Molmil
Crystal Structure of Stabilin-1 Interacting Chitinase-Like Protein, SI-CLP
Descriptor: Chitinase domain-containing protein 1, SULFATE ION
Authors:Meng, G, Green, T.J.
Deposit date:2008-01-15
Release date:2009-01-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of human stabilin-1 interacting chitinase-like protein (SI-CLP) reveals a saccharide-binding cleft with lower sugar-binding selectivity.
J.Biol.Chem., 285, 2010
7UDB
DownloadVisualize
BU of 7udb by Molmil
Cryo-EM structure of a synaptobrevin-Munc18-1-syntaxin-1 complex class 2
Descriptor: Synaptobrevin-2, Syntaxin-1A, Syntaxin-binding protein 1
Authors:Rizo, J, Bai, X, Stepien, K.P, Xu, J, Zhang, X.
Deposit date:2022-03-18
Release date:2022-04-06
Last modified:2022-07-06
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:SNARE assembly enlightened by cryo-EM structures of a synaptobrevin-Munc18-1-syntaxin-1 complex.
Sci Adv, 8, 2022
7UDC
DownloadVisualize
BU of 7udc by Molmil
cryo-EM structures of a synaptobrevin-Munc18-1-syntaxin-1 complex class1
Descriptor: Synaptobrevin-2, Syntaxin-1A, Syntaxin-binding protein 1
Authors:Rizo, J, Bai, X, Stepien, K.P, Xu, J, Zhang, X.
Deposit date:2022-03-18
Release date:2022-04-06
Last modified:2022-07-06
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:SNARE assembly enlightened by cryo-EM structures of a synaptobrevin-Munc18-1-syntaxin-1 complex.
Sci Adv, 8, 2022
7YTO
DownloadVisualize
BU of 7yto by Molmil
The Crystal Structure Analysis of Creatine Amidinohydrolase from Alcaligenes sp. KS-85
Descriptor: Creatine amidinohydrolase
Authors:Chen, R.S.
Deposit date:2022-08-15
Release date:2023-08-23
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Creatinase: Using Increased Entropy to Improve the Activity and Thermostability.
J.Phys.Chem.B, 127, 2023
1CP3
DownloadVisualize
BU of 1cp3 by Molmil
CRYSTAL STRUCTURE OF THE COMPLEX OF APOPAIN WITH THE TETRAPEPTIDE INHIBITOR ACE-DVAD-FMC
Descriptor: ACETYL-ASP-VAL-ALA-ASP-FLUOROMETHYLKETONE, APOPAIN
Authors:Mittl, P.R.E, Dimarco, S, Gruetter, M.G.
Deposit date:1996-12-12
Release date:1997-12-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of recombinant human CPP32 in complex with the tetrapeptide acetyl-Asp-Val-Ala-Asp fluoromethyl ketone.
J.Biol.Chem., 272, 1997
6O84
DownloadVisualize
BU of 6o84 by Molmil
Cryo-EM structure of OTOP3 from xenopus tropicalis
Descriptor: LOC100127796 protein,LOC100127796 protein,OTOP3,LOC100127796 protein,LOC100127796 protein
Authors:Chen, Q.F, Bai, X.C, Jiang, Y.X.
Deposit date:2019-03-08
Release date:2019-04-24
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.92 Å)
Cite:Structural and functional characterization of an otopetrin family proton channel.
Elife, 8, 2019
8EQB
DownloadVisualize
BU of 8eqb by Molmil
FAM46C/BCCIPalpha/Nanobody complex
Descriptor: Isoform 2 of BRCA2 and CDKN1A-interacting protein, Synthetic nanobody 1, Terminal nucleotidyltransferase 5C
Authors:Liu, S, Chen, H, Yin, Y, Bai, X, Zhang, X.
Deposit date:2022-10-07
Release date:2023-03-15
Last modified:2023-04-26
Method:ELECTRON MICROSCOPY (6.5 Å)
Cite:Inhibition of FAM46/TENT5 activity by BCCIP alpha adopting a unique fold.
Sci Adv, 9, 2023
2YBY
DownloadVisualize
BU of 2yby by Molmil
Structure of domains 6 and 7 of the mouse complement regulator Factor H
Descriptor: 1,2-ETHANEDIOL, COMPLEMENT FACTOR H
Authors:Everett, R.J, Caesar, J.J.E, Johnson, S.J, Tang, C.M, Lea, S.M.
Deposit date:2011-03-30
Release date:2012-04-18
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Design and Evaluation of Meningococcal Vaccines Through Structure-Based Modification of Host and Pathogen Molecules.
Plos Pathog., 8, 2012
5JSJ
DownloadVisualize
BU of 5jsj by Molmil
Crystal structure of Spindlin1 bound to compound EML631
Descriptor: CHLORIDE ION, MAGNESIUM ION, Spindlin-1, ...
Authors:Su, X, Li, H.
Deposit date:2016-05-08
Release date:2017-05-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.348 Å)
Cite:Developing Spindlin1 small-molecule inhibitors by using protein microarrays
Nat. Chem. Biol., 13, 2017
6C9A
DownloadVisualize
BU of 6c9a by Molmil
Cryo-EM structure of mouse TPC1 channel in the PtdIns(3,5)P2-bound state
Descriptor: (2R)-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,4,6-trihydroxy-3,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:She, J, Guo, J, Chen, Q, Bai, X, Jiang, Y.
Deposit date:2018-01-25
Release date:2018-04-04
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural insights into the voltage and phospholipid activation of the mammalian TPC1 channel.
Nature, 556, 2018
6C96
DownloadVisualize
BU of 6c96 by Molmil
Cryo-EM structure of mouse TPC1 channel in the apo state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, SODIUM ION, ...
Authors:She, J, Guo, J, Chen, Q, Bai, X, Jiang, Y.
Deposit date:2018-01-25
Release date:2018-04-04
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural insights into the voltage and phospholipid activation of the mammalian TPC1 channel.
Nature, 556, 2018
5JSG
DownloadVisualize
BU of 5jsg by Molmil
Crystal structure of Spindlin1 bound to compound EML405
Descriptor: CHLORIDE ION, MAGNESIUM ION, Spindlin-1, ...
Authors:Su, X, Li, H.
Deposit date:2016-05-08
Release date:2017-05-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Developing Spindlin1 small-molecule inhibitors by using protein microarrays
Nat. Chem. Biol., 13, 2017
6O58
DownloadVisualize
BU of 6o58 by Molmil
Human MCU-EMRE complex, dimer of channel
Descriptor: CALCIUM ION, Calcium uniporter protein, mitochondrial, ...
Authors:Wang, Y, Bai, X, Jiang, Y.
Deposit date:2019-03-01
Release date:2019-05-22
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural Mechanism of EMRE-Dependent Gating of the Human Mitochondrial Calcium Uniporter.
Cell, 177, 2019
6O5B
DownloadVisualize
BU of 6o5b by Molmil
Monomer of a cation channel
Descriptor: CALCIUM ION, Calcium uniporter protein, mitochondrial, ...
Authors:Wang, Y, Bai, X, Jiang, Y.
Deposit date:2019-03-01
Release date:2019-05-22
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural Mechanism of EMRE-Dependent Gating of the Human Mitochondrial Calcium Uniporter.
Cell, 177, 2019
3JBT
DownloadVisualize
BU of 3jbt by Molmil
Atomic structure of the Apaf-1 apoptosome
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, Apoptotic protease-activating factor 1, Cytochrome c, ...
Authors:Zhou, M, Li, Y, Hu, Q, Bai, X, Huang, W, Yan, C, Scheres, S.H.W, Shi, Y.
Deposit date:2015-10-15
Release date:2015-11-18
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Atomic structure of the apoptosome: mechanism of cytochrome c- and dATP-mediated activation of Apaf-1
Genes Dev., 29, 2015
3J9K
DownloadVisualize
BU of 3j9k by Molmil
Structure of Dark apoptosome in complex with Dronc CARD domain
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Apaf-1 related killer DARK, Caspase Nc
Authors:Pang, Y, Bai, X, Yan, C, Hao, Q, Chen, Z, Wang, J, Scheres, S.H.W, Shi, Y.
Deposit date:2015-02-04
Release date:2015-02-25
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structure of the apoptosome: mechanistic insights into activation of an initiator caspase from Drosophila.
Genes Dev., 29, 2015
3J9L
DownloadVisualize
BU of 3j9l by Molmil
Structure of Dark apoptosome from Drosophila melanogaster
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, Apaf-1 related killer DARK
Authors:Pang, Y, Bai, X, Yan, C, Hao, Q, Chen, Z, Wang, J, Scheres, S.H.W, Shi, Y.
Deposit date:2015-02-04
Release date:2015-02-25
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structure of the apoptosome: mechanistic insights into activation of an initiator caspase from Drosophila.
Genes Dev., 29, 2015
5WPT
DownloadVisualize
BU of 5wpt by Molmil
Cryo-EM structure of mammalian endolysosomal TRPML1 channel in nanodiscs in closed II conformation at 3.75 Angstrom resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Mucolipin-1, SODIUM ION
Authors:Chen, Q, She, J, Guo, J, Bai, X, Jiang, Y.
Deposit date:2017-08-07
Release date:2017-10-18
Last modified:2023-04-05
Method:ELECTRON MICROSCOPY (3.75 Å)
Cite:Structure of mammalian endolysosomal TRPML1 channel in nanodiscs.
Nature, 550, 2017

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon