Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4N4R
DownloadVisualize
BU of 4n4r by Molmil
Structure basis of lipopolysaccharide biogenesis
Descriptor: CACODYLATE ION, LPS-assembly lipoprotein LptE, LPS-assembly protein LptD, ...
Authors:Dong, H, Xiang, Q, Wang, Z, Paterson, N.G, He, C, Zhang, Y, Wang, W, Dong, C.
Deposit date:2013-10-08
Release date:2014-06-25
Last modified:2014-07-16
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis for outer membrane lipopolysaccharide insertion.
Nature, 511, 2014
4L02
DownloadVisualize
BU of 4l02 by Molmil
Crystal Structure of SphK1 with inhibitor
Descriptor: (2R,4S)-1-[2-(4-{[4-(3,4-dichlorophenyl)-1,3-thiazol-2-yl]amino}phenyl)ethyl]-2-(hydroxymethyl)piperidin-4-ol, Sphingosine kinase 1
Authors:Min, X, Walker, N, Wang, Z.
Deposit date:2013-05-30
Release date:2013-07-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structure guided design of a series of sphingosine kinase (SphK) inhibitors.
Bioorg.Med.Chem.Lett., 23, 2013
6UK5
DownloadVisualize
BU of 6uk5 by Molmil
Structure of SAM bound CalS10, an amino pentose methyltransferase from Micromonospora echinaspora involved in calicheamicin biosynthesis
Descriptor: ACETATE ION, CalS10, DI(HYDROXYETHYL)ETHER, ...
Authors:Alvarado, S.K, Miller, M.D, Xu, W, Wang, Z, Van Lanen, S.G, Thorson, J.S, Phillips Jr, G.N.
Deposit date:2019-10-04
Release date:2020-10-07
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of SAM bound CalS10, an amino pentose methyltransferase from Micromonospora echinaspora involved in calicheamicin biosynthesis
To Be Published
6U6X
DownloadVisualize
BU of 6u6x by Molmil
Human SAMHD1 bound to deoxyribo(C*G*C*C*T)-oligonucleotide
Descriptor: DNA SC-GS-SC-SC-DT, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, ZINC ION
Authors:Taylor, A.B, Bhattacharya, A, Wang, Z, Ivanov, D.N.
Deposit date:2019-08-30
Release date:2020-09-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Nucleic acid binding by SAMHD1 contributes to the antiretroviral activity and is enhanced by the GpsN modification.
Nat Commun, 12, 2021
6U6Y
DownloadVisualize
BU of 6u6y by Molmil
Human SAMHD1 bound to ribo(CGCCU)-oligonucleotide
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, RNA CGCCU, ...
Authors:Taylor, A.B, Bhattacharya, A, Wang, Z, Ivanov, D.N.
Deposit date:2019-08-30
Release date:2020-09-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Nucleic acid binding by SAMHD1 contributes to the antiretroviral activity and is enhanced by the GpsN modification.
Nat Commun, 12, 2021
3GEQ
DownloadVisualize
BU of 3geq by Molmil
Structural basis for the chemical rescue of Src kinase activity
Descriptor: 1-TERT-BUTYL-3-(4-CHLORO-PHENYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-YLAMINE, Proto-oncogene tyrosine-protein kinase Src
Authors:Muratore, K.E, Seeliger, M.A, Wang, Z, Fomina, D, Neiswinger, J, Havranek, J.J, Baker, D, Kuriyan, J, Cole, P.A.
Deposit date:2009-02-25
Release date:2009-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Comparative analysis of mutant tyrosine kinase chemical rescue.
Biochemistry, 48, 2009
6V3F
DownloadVisualize
BU of 6v3f by Molmil
Structure of NPC1-like intracellular cholesterol transporter 1 (NPC1L1)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, ...
Authors:Huang, C.S, Yu, X, Min, X, Wang, Z.
Deposit date:2019-11-25
Release date:2020-07-01
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Cryo-EM structures of NPC1L1 reveal mechanisms of cholesterol transport and ezetimibe inhibition
Sci Adv, 6, 2020
6UWD
DownloadVisualize
BU of 6uwd by Molmil
Crystal structure of Apo AtmM
Descriptor: ACETATE ION, D-glucose O-methyltransferase, MAGNESIUM ION
Authors:Alvarado, S.K, Wang, Z, Miller, M.D, Thorson, J.S, Phillips Jr, G.N.
Deposit date:2019-11-05
Release date:2020-11-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Structure of Apo AtmM
To Be Published
6URT
DownloadVisualize
BU of 6urt by Molmil
Extended Sensor Paddles with Bound Lipids Revealed in Mechanosensitive Channel YnaI
Descriptor: Low conductance mechanosensitive channel YnaI, O-{(R)-hydroxy[(2R)-3-(icosyloxy)-2-(tetradecanoyloxy)propoxy]phosphoryl}-L-serine
Authors:Hu, W, Wang, Z, Zheng, H.
Deposit date:2019-10-24
Release date:2020-10-28
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:Extended Sensor Paddles with Bound Lipids Revealed in Mechanosensitive Channel YnaI
To Be Published
6UV6
DownloadVisualize
BU of 6uv6 by Molmil
AtmM with bound rebeccamycin analogue
Descriptor: 12-beta-D-glucopyranosyl-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione, D-glucose O-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Alvarado, S.K, Wang, Z, Miller, M.D, Thorson, J.S, Phillips Jr, G.N.
Deposit date:2019-11-01
Release date:2020-11-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Structure of AtmM Bound with Glycosylated Indolocarbazole
To Be Published
6V3H
DownloadVisualize
BU of 6v3h by Molmil
Structure of NPC1-like intracellular cholesterol transporter 1 (NPC1L1) in complex with an ezetimibe analog
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4-[(2S,3R)-3-[(3S)-3-(4-fluorophenyl)-3-hydroxypropyl]-1-(4-{3-[(methylsulfonyl)amino]prop-1-yn-1-yl}phenyl)-4-oxoazetidin-2-yl]phenyl beta-D-glucopyranosiduronic acid, ...
Authors:Huang, C.S, Yu, X, Min, X, Wang, Z.
Deposit date:2019-11-25
Release date:2020-07-01
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Cryo-EM structures of NPC1L1 reveal mechanisms of cholesterol transport and ezetimibe inhibition
Sci Adv, 6, 2020
8JQB
DownloadVisualize
BU of 8jqb by Molmil
Structure of Gabija GajA-GajB 4:4 Complex
Descriptor: Endonuclease GajA, Gabija protein GajB
Authors:Li, J, Wang, Z, Wang, L.
Deposit date:2023-06-13
Release date:2024-02-28
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structures and activation mechanism of the Gabija anti-phage system.
Nature, 2024
8JQC
DownloadVisualize
BU of 8jqc by Molmil
Novel Anti-phage System
Descriptor: Endonuclease GajA, Gabija protein GajB
Authors:Li, J, Wang, Z, Wang, L.
Deposit date:2023-06-13
Release date:2024-02-28
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.39 Å)
Cite:Structures and activation mechanism of the Gabija anti-phage system.
Nature, 2024
8JQ9
DownloadVisualize
BU of 8jq9 by Molmil
Novel Anti-phage System
Descriptor: Endonuclease GajA
Authors:Li, J, Wang, Z, Wang, L.
Deposit date:2023-06-13
Release date:2024-02-28
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (2.66 Å)
Cite:Structures and activation mechanism of the Gabija anti-phage system.
Nature, 2024
8HUD
DownloadVisualize
BU of 8hud by Molmil
Cryo-EM structure of the EvCas9-sgRNA-target DNA ternary complex
Descriptor: CRISPR-associated endonuclease Cas9, Non-target DNA strand, Target DNA strand, ...
Authors:Tang, N, Wu, Z, Gao, Y, Chen, W, Su, M, Wang, Z, Ji, Q.
Deposit date:2022-12-23
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (3.43 Å)
Cite:Cryo-EM structure of the EvCas9-sgRNA-target DNA ternary complex
To Be Published
5VT2
DownloadVisualize
BU of 5vt2 by Molmil
Crystal structure of growth differentiation factor
Descriptor: 1,2-ETHANEDIOL, Growth/differentiation factor 15
Authors:Min, X, Wang, Z.
Deposit date:2017-05-15
Release date:2017-11-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Long-acting MIC-1/GDF15 molecules to treat obesity: Evidence from mice to monkeys.
Sci Transl Med, 9, 2017
3JAV
DownloadVisualize
BU of 3jav by Molmil
Structure of full-length IP3R1 channel in the apo-state determined by single particle cryo-EM
Descriptor: Inositol 1,4,5-trisphosphate receptor type 1
Authors:Fan, G, Baker, M.L, Wang, Z, Baker, M.R, Sinyagovskiy, P.A, Chiu, W, Ludtke, S.J, Serysheva, I.I.
Deposit date:2015-06-30
Release date:2015-10-07
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Gating machinery of InsP3R channels revealed by electron cryomicroscopy.
Nature, 527, 2015
5WI9
DownloadVisualize
BU of 5wi9 by Molmil
Crystal structure of KL with an agonist Fab
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 39F7 Fab heavy chain, ...
Authors:Johnstone, S, Min, X, Wang, Z.
Deposit date:2017-07-18
Release date:2018-07-25
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Agonistic beta-Klotho antibody mimics fibroblast growth factor 21 (FGF21) functions.
J. Biol. Chem., 293, 2018
5GNY
DownloadVisualize
BU of 5gny by Molmil
The structure of WT Bgl6
Descriptor: Beta-glucosidase, beta-D-glucopyranose
Authors:Xie, W, Pang, P, Cao, L.C, Liu, Y.H, Wang, Z.
Deposit date:2016-07-25
Release date:2017-04-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.105 Å)
Cite:Structures of a glucose-tolerant beta-glucosidase provide insights into its mechanism.
J. Struct. Biol., 198, 2017
5GNX
DownloadVisualize
BU of 5gnx by Molmil
The E171Q mutant structure of Bgl6
Descriptor: Beta-glucosidase, GLYCEROL, PROPANOIC ACID, ...
Authors:Xie, W, Pang, P, Cao, L.C, Liu, Y.H, Wang, Z.
Deposit date:2016-07-25
Release date:2017-04-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures of a glucose-tolerant beta-glucosidase provide insights into its mechanism.
J. Struct. Biol., 198, 2017
5GNZ
DownloadVisualize
BU of 5gnz by Molmil
The M3 mutant structure of Bgl6
Descriptor: Beta-glucosidase, GLYCEROL, beta-D-glucopyranose
Authors:Xie, W, Pang, P, Cao, L.C, Liu, Y.H, Wang, Z.
Deposit date:2016-07-25
Release date:2017-04-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structures of a glucose-tolerant beta-glucosidase provide insights into its mechanism.
J. Struct. Biol., 198, 2017
6B8O
DownloadVisualize
BU of 6b8o by Molmil
WT Ig-like V Domain with Phosphatidylserine
Descriptor: 1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINE, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Sudom, A, Wang, Z.
Deposit date:2017-10-09
Release date:2018-06-27
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Molecular basis for the loss-of-function effects of the Alzheimer's disease-associated R47H variant of the immune receptor TREM2.
J. Biol. Chem., 293, 2018
7WVZ
DownloadVisualize
BU of 7wvz by Molmil
CalA3_modular PKS_KS-AT-DH-KR
Descriptor: Beta-ketoacyl-acyl-carrier-protein synthase I
Authors:Wang, J, Wang, Z.
Deposit date:2022-02-12
Release date:2023-02-22
Last modified:2023-10-11
Method:ELECTRON MICROSCOPY (3.38 Å)
Cite:C-N bond formation by a polyketide synthase.
Nat Commun, 14, 2023
6ITM
DownloadVisualize
BU of 6itm by Molmil
Crystal structure of FXR in complex with agonist XJ034
Descriptor: 1-adamantyl-[4-(5-chloranyl-2-methyl-phenyl)piperazin-1-yl]methanone, Bile acid receptor, HD3 Peptide from Nuclear receptor coactivator 1
Authors:Zhang, H, Wang, Z.
Deposit date:2018-11-23
Release date:2019-11-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Pose Filter-Based Ensemble Learning Enables Discovery of Orally Active, Nonsteroidal Farnesoid X Receptor Agonists.
J.Chem.Inf.Model., 60, 2020
7XSC
DownloadVisualize
BU of 7xsc by Molmil
Crystal structure of SARS-CoV-2 spike receptor binding domain bound with P5S-2B10
Descriptor: P5S-2B10 Heavy chain, P5S-2B10 Light chain, Spike protein S1
Authors:Wang, X, Wang, Z, Lin, Z.
Deposit date:2022-05-13
Release date:2023-05-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Infection with wild-type SARS-CoV-2 elicits broadly neutralizing and protective antibodies against omicron subvariants.
Nat.Immunol., 24, 2023

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon