Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4M0A
DownloadVisualize
BU of 4m0a by Molmil
Human DNA Polymerase Mu post-catalytic complex
Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DNA-directed DNA/RNA polymerase mu, ...
Authors:Moon, A.F, Pryor, J.M, Ramsden, D.A, Kunkel, T.A, Bebenek, K, Pedersen, L.C.
Deposit date:2013-08-01
Release date:2014-02-05
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Sustained active site rigidity during synthesis by human DNA polymerase mu.
Nat.Struct.Mol.Biol., 21, 2014
4MGW
DownloadVisualize
BU of 4mgw by Molmil
Comparison of the structural and dynamic effects of 5-methylcytosine and 5-chlorocytosine in a CpG dinucleotide sequence
Descriptor: ClC containing Dickerson-Drew dodecamer, MAGNESIUM ION
Authors:Theruvathu, J.A, Whitney, Y, Montgomery Pettitt, B, Sowers, L.C.
Deposit date:2013-08-29
Release date:2013-11-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Comparison of the structural and dynamic effects of 5-methylcytosine and 5-chlorocytosine in a CpG dinucleotide sequence.
Biochemistry, 52, 2013
4LQW
DownloadVisualize
BU of 4lqw by Molmil
Crystal structure of HIV-1 capsid N-terminal domain in complex with NUP358 cyclophilin
Descriptor: Capsid protein p24, E3 SUMO-protein ligase RanBP2
Authors:Price, A.J, James, L.C.
Deposit date:2013-07-19
Release date:2013-08-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:HIV-1 capsid undergoes coupled binding and isomerization by the nuclear pore protein NUP358.
Retrovirology, 10, 2013
4L4T
DownloadVisualize
BU of 4l4t by Molmil
Structure of human MAIT TCR in complex with human MR1-6-FP
Descriptor: 2-amino-4-oxo-3,4-dihydropteridine-6-carbaldehyde, Beta-2-microglobulin, MAIT T-cell receptor alpha chain, ...
Authors:Patel, O, Kjer-Nielsen, L, Le Nours, J, Eckle, S.B.G, Birkinshaw, R.W, Beddoe, T, Corbett, A.J, Liu, L, Miles, J.J, Meehan, B, Reantragoon, R, Sandoval-Romero, M.L, Sullivan, L.C, Brooks, A.G, Chen, Z, Fairlie, D.P, McCluskey, J, Rossjohn, J.
Deposit date:2013-06-09
Release date:2013-07-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Recognition of vitamin B metabolites by mucosal-associated invariant T cells.
Nat Commun, 4, 2013
4NKK
DownloadVisualize
BU of 4nkk by Molmil
Crystal structure of a multi-drug resistant clinical isolate-769 HIV-1 protease variant that is resistant to the dimerization inhibitory activity of TLF-PafF
Descriptor: HIV-1 protease
Authors:Yedidi, R.S, Proteasa, G, Kovari, L.C.
Deposit date:2013-11-12
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A multi-drug resistant HIV-1 protease is resistant to the dimerization inhibitory activity of TLF-PafF.
J.Mol.Graph.Model., 53C, 2014
4LZG
DownloadVisualize
BU of 4lzg by Molmil
Binary complex of human DNA Polymerase Mu with DNA
Descriptor: CHLORIDE ION, DNA-directed DNA/RNA polymerase mu, GLYCEROL, ...
Authors:Moon, A.F, Pryor, J.M, Ramsden, D.A, Kunkel, T.A, Bebenek, K, Pedersen, L.C.
Deposit date:2013-07-31
Release date:2014-02-05
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.599 Å)
Cite:Sustained active site rigidity during synthesis by human DNA polymerase mu.
Nat.Struct.Mol.Biol., 21, 2014
4L4V
DownloadVisualize
BU of 4l4v by Molmil
Structure of human MAIT TCR in complex with human MR1-RL-6-Me-7-OH
Descriptor: 1-deoxy-1-(7-hydroxy-6-methyl-2,4-dioxo-3,4-dihydropteridin-8(2H)-yl)-D-ribitol, Beta-2-microglobulin, GLYCEROL, ...
Authors:Patel, O, Kjer-Nielsen, L, Le Nours, J, Eckle, S.B.G, Birkinshaw, R.W, Beddoe, T, Corbett, A.J, Liu, L, Miles, J.J, Meehan, B, Reantragoon, R, Sandoval-Romero, M.L, Sullivan, L.C, Brooks, A.G, Chen, Z, Fairlie, D.P, McCluskey, J, Rossjohn, J.
Deposit date:2013-06-09
Release date:2013-07-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Recognition of vitamin B metabolites by mucosal-associated invariant T cells.
Nat Commun, 4, 2013
4NJ7
DownloadVisualize
BU of 4nj7 by Molmil
PB1 Domain of AtARF7 - SeMet Derivative
Descriptor: Auxin response factor 7
Authors:Korasick, D.A, Westfall, C.S, Lee, S.G, Nanao, M, Jez, J.M, Strader, L.C.
Deposit date:2013-11-08
Release date:2014-03-26
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (3 Å)
Cite:Molecular basis for AUXIN RESPONSE FACTOR protein interaction and the control of auxin response repression.
Proc.Natl.Acad.Sci.USA, 111, 2014
4NJ6
DownloadVisualize
BU of 4nj6 by Molmil
PB1 Domain of AtARF7
Descriptor: Auxin response factor 7
Authors:Korasick, D.A, Westfall, C.S, Lee, S.G, Nanao, M, Jez, J.M, Strader, L.C.
Deposit date:2013-11-08
Release date:2014-03-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular basis for AUXIN RESPONSE FACTOR protein interaction and the control of auxin response repression.
Proc.Natl.Acad.Sci.USA, 111, 2014
4NDZ
DownloadVisualize
BU of 4ndz by Molmil
Structure of Maltose Binding Protein fusion to 2-O-Sulfotransferase with bound heptasaccharide and PAP
Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, Maltose-binding periplasmic protein, Heparan sulfate 2-O-sulfotransferase 1 fusion, ...
Authors:Liu, C, Sheng, J, Krahn, J.M, Perera, L, Xu, Y, Hsieh, P, Liu, J, Pedersen, L.C.
Deposit date:2013-10-28
Release date:2014-03-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Deciphering the role of 2-O-sulfotransferase in regulating heparan sulfate biosynthesis
To be Published
4P09
DownloadVisualize
BU of 4p09 by Molmil
Crystal structure of HOIP PUB domain
Descriptor: E3 ubiquitin-protein ligase RNF31
Authors:Akutsu, M, Schaeffer, V, Olma, M.H, Gomes, L.C, Kawasaki, M, Dikic, I.
Deposit date:2014-02-20
Release date:2014-05-07
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Binding of OTULIN to the PUB domain of HOIP controls NF-kappa B signaling.
Mol.Cell, 54, 2014
4P0A
DownloadVisualize
BU of 4p0a by Molmil
Crystal structure of HOIP PUB domain in complex with p97 PIM
Descriptor: E3 ubiquitin-protein ligase RNF31, Transitional endoplasmic reticulum ATPase
Authors:Akutsu, M, Schaeffer, V, Olma, M.H, Gomes, L.C, Kawasaki, M, Dikic, I.
Deposit date:2014-02-20
Release date:2014-05-07
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3001 Å)
Cite:Binding of OTULIN to the PUB domain of HOIP controls NF-kappa B signaling.
Mol.Cell, 54, 2014
4M04
DownloadVisualize
BU of 4m04 by Molmil
Human DNA Polymerase Mu ternary complex
Descriptor: 1,2-ETHANEDIOL, 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Moon, A.F, Pryor, J.M, Ramsden, D.A, Kunkel, T.A, Bebenek, K, Pedersen, L.C.
Deposit date:2013-08-01
Release date:2014-02-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.898 Å)
Cite:Sustained active site rigidity during synthesis by human DNA polymerase mu.
Nat.Struct.Mol.Biol., 21, 2014
4OUO
DownloadVisualize
BU of 4ouo by Molmil
anti-Bla g 1 scFv
Descriptor: CHLORIDE ION, SULFATE ION, anti Bla g 1 scFv
Authors:Mueller, G.A, Ankney, J.A, Glesner, J, Khurana, T, Edwards, L.L, Pedersen, L.C, Perera, L, Slater, J.E, Pomes, A, London, R.E.
Deposit date:2014-02-18
Release date:2014-03-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Characterization of an anti-Bla g 1 scFv: Epitope mapping and cross-reactivity.
Mol.Immunol., 59, 2014
4P0B
DownloadVisualize
BU of 4p0b by Molmil
Crystal structure of HOIP PUB domain in complex with OTULIN PIM
Descriptor: E3 ubiquitin-protein ligase RNF31, Ubiquitin thioesterase otulin
Authors:Akutsu, M, Schaeffer, V, Olma, M.H, Gomes, L.C, Kawasaki, M, Dikic, I.
Deposit date:2014-02-20
Release date:2014-05-07
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.7005 Å)
Cite:Binding of OTULIN to the PUB domain of HOIP controls NF-kappa B signaling.
Mol.Cell, 54, 2014
4LZD
DownloadVisualize
BU of 4lzd by Molmil
Human DNA polymerase mu- Apoenzyme
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DNA-directed DNA/RNA polymerase mu, ...
Authors:Moon, A.F, Pryor, J.M, Ramsden, D.A, Kunkel, T.A, Bebenek, K, Pedersen, L.C.
Deposit date:2013-07-31
Release date:2014-02-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.849 Å)
Cite:Sustained active site rigidity during synthesis by human DNA polymerase mu.
Nat.Struct.Mol.Biol., 21, 2014
2DO8
DownloadVisualize
BU of 2do8 by Molmil
Solution Structure of UPF0301 protein HD_1794
Descriptor: UPF0301 protein HD_1794
Authors:Zhang, Q, Liu, G, Shastry, R, Jiang, M, Cunningham, K, Ma, L.C, Xiao, R, Acton, T.R, Montelione, G.T, Szyperski, T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2006-04-27
Release date:2006-05-25
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution Structure of UPF0301 protein HD_1794
To be published
2BX5
DownloadVisualize
BU of 2bx5 by Molmil
Is FR1 the antibody's Achillies heel
Descriptor: VD9 VKI LIGHT-CHAIN
Authors:James, L.C.
Deposit date:2005-07-22
Release date:2006-11-15
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Beta-Edge Interactions in a Pentadecameric Human Antibody Vkappa Domain.
J.Mol.Biol., 367, 2007
2BCV
DownloadVisualize
BU of 2bcv by Molmil
DNA polymerase lambda in complex with Dttp and a DNA duplex containing an unpaired Dtmp
Descriptor: 5'-D(*CP*AP*GP*TP*AP*(O2C))-3', 5'-D(*CP*GP*GP*CP*AP*GP*TP*TP*AP*CP*TP*G)-3', 5'-D(P*GP*CP*CP*G)-3', ...
Authors:Garcia-Diaz, M, Bebenek, K, Krahn, J.M, Pedersen, L.C, Kunkel, T.A.
Deposit date:2005-10-19
Release date:2006-03-07
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural analysis of strand misalignment during DNA synthesis by a human DNA polymerase
Cell(Cambridge,Mass.), 124, 2006
2BLS
DownloadVisualize
BU of 2bls by Molmil
AMPC BETA-LACTAMASE FROM ESCHERICHIA COLI
Descriptor: AMPC BETA-LACTAMASE
Authors:Usher, K.C, Wery, J.-P, Blaszczak, L.C, Remington, S.J.
Deposit date:1998-06-03
Release date:1998-08-12
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Three-dimensional structure of AmpC beta-lactamase from Escherichia coli bound to a transition-state analogue: possible implications for the oxyanion hypothesis and for inhibitor design.
Biochemistry, 37, 1998
2BFI
DownloadVisualize
BU of 2bfi by Molmil
Molecular basis for amyloid fibril formation and stability
Descriptor: SYNTHETIC PEPTIDE
Authors:Makin, O.S, Atkins, E, Sikorski, P, Johansson, J, Serpell, L.C.
Deposit date:2004-12-07
Release date:2005-01-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Molecular Basis for Amyloid Fibril Formation and Stability
Proc.Natl.Acad.Sci.USA, 102, 2005
2C1N
DownloadVisualize
BU of 2c1n by Molmil
Molecular basis for the recognition of phosphorylated and phosphoacetylated histone H3 by 14-3-3
Descriptor: 14-3-3 PROTEIN ZETA/DELTA, HISTONE H3 ACETYLPHOSPHOPEPTIDE
Authors:Welburn, J.P.I, Macdonald, N, Noble, M.E.M, Nguyen, A, Yaffe, M.B, Clynes, D, Moggs, J.G, Orphanides, G, Thomson, S, Edmunds, J.W, Clayton, A.L, Endicott, J.A, Mahadevan, L.C.
Deposit date:2005-09-16
Release date:2005-11-02
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular Basis for the Recognition of Phosphorylated and Phosphoacetylated Histone H3 by 14-3-3.
Mol.Cell, 20, 2005
2C1J
DownloadVisualize
BU of 2c1j by Molmil
Molecular basis for the recognition of phosphorylated and phosphoacetylated histone H3 by 14-3-3
Descriptor: 14-3-3 PROTEIN ZETA/DELTA, HISTONE H3 ACETYLPHOSPHOPEPTIDE
Authors:Welburn, J.P.I, Macdonald, N, Noble, M.E.M, Nguyen, A, Yaffe, M.B, Clynes, D, Moggs, J.G, Orphanides, G, Thomson, S, Edmunds, J.W, Clayton, A.L, Endicott, J.A, Mahadevan, L.C.
Deposit date:2005-09-15
Release date:2005-11-02
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Molecular Basis for the Recognition of Phosphorylated and Phosphoacetylated Histone H3 by 14-3-3.
Mol.Cell, 20, 2005
2C8V
DownloadVisualize
BU of 2c8v by Molmil
Insights into the role of nucleotide-dependent conformational change in nitrogenase catalysis: Structural characterization of the nitrogenase Fe protein Leu127 deletion variant with bound MgATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, FE2/S2 (INORGANIC) CLUSTER, MAGNESIUM ION, ...
Authors:Sen, S, Krishnakumar, A, McClead, J, Johnson, M.K, Seefeldt, L.C, Szilagyi, R.K, Peters, J.W.
Deposit date:2005-12-08
Release date:2006-06-01
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Insights Into the Role of Nucleotide-Dependent Conformational Change in Nitrogenase Catalysis: Structural Characterization of the Nitrogenase Fe Protein Leu127 Deletion Variant with Bound Mgatp.
J.Inorg.Biochem., 100, 2006
2BCU
DownloadVisualize
BU of 2bcu by Molmil
DNA polymerase lambda in complex with a DNA duplex containing an unpaired Damp and a T:T mismatch
Descriptor: 5'-D(*CP*AP*GP*TP*TP*CP*G)-3', 5'-D(*CP*GP*GP*CP*CP*GP*AP*TP*AP*CP*TP*G)-3', 5'-D(P*GP*CP*CP*G)-3', ...
Authors:Garcia-Diaz, M, Bebenek, K, Krahn, J.M, Pedersen, L.C, Kunkel, T.A.
Deposit date:2005-10-19
Release date:2006-03-07
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural analysis of strand misalignment during DNA synthesis by a human DNA polymerase
Cell(Cambridge,Mass.), 124, 2006

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon