Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
225D
DownloadVisualize
BU of 225d by Molmil
A TETRAMERIC DNA STRUCTURE WITH PROTONATED CYTOSINE:CYTOSINE BASE PAIRS
Descriptor: DNA (5'-D(*TP*CP*CP*CP*CP*C)-3')
Authors:Gehring, K, Leroy, J.L, Gueron, M.
Deposit date:1995-07-12
Release date:1995-10-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:A tetrameric DNA structure with protonated cytosine.cytosine base pairs.
Nature, 363, 1993
3UVT
DownloadVisualize
BU of 3uvt by Molmil
Crystal structure of the third catalytic domain of ERp46
Descriptor: SULFATE ION, Thioredoxin domain-containing protein 5
Authors:Kozlov, G, Gulerez, I.E, Gehring, K.
Deposit date:2011-11-30
Release date:2012-04-11
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the third catalytic domain of the protein disulfide isomerase ERp46.
Acta Crystallogr.,Sect.F, 68, 2012
6WUR
DownloadVisualize
BU of 6wur by Molmil
Crystal structure of PRL-2 phosphatase C101D mutant in complex with the Bateman domain of CNNM3 magnesium transporter
Descriptor: Metal transporter CNNM3, Protein tyrosine phosphatase type IVA 2, SODIUM ION
Authors:Kozlov, G, Gehring, K.
Deposit date:2020-05-05
Release date:2020-07-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.882 Å)
Cite:Crystal structure of PRL phosphatase C104D mutant in complex with the Bateman domain of CNNM magnesium transporter
J.Biol.Chem., 2020
4Z2Z
DownloadVisualize
BU of 4z2z by Molmil
New crystal structure of yeast Ddi1 aspartyl protease reveals substrate engagement mode
Descriptor: DNA damage-inducible protein 1
Authors:Trempe, J.-F, Feng, X, Gehring, K.
Deposit date:2015-03-30
Release date:2016-04-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural studies of the yeast DNA damage-inducible protein Ddi1 reveal domain architecture of this eukaryotic protein family.
Sci Rep, 6, 2016
5VXQ
DownloadVisualize
BU of 5vxq by Molmil
X-Ray crystallography structure of the parallel stranded duplex formed by 5-rA5-dA-rA5
Descriptor: AMMONIUM ION, DNA/RNA (5'-R(*AP*AP*AP*AP*A)-D(P*A)-R(P*AP*AP*AP*AP*A)-3')
Authors:Xie, J, Chen, Y, Wei, X, Kozlov, G, Gehring, K.
Deposit date:2017-05-23
Release date:2017-08-16
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.002 Å)
Cite:Influence of nucleotide modifications at the C2' position on the Hoogsteen base-paired parallel-stranded duplex of poly(A) RNA.
Nucleic Acids Res., 45, 2017
5VMD
DownloadVisualize
BU of 5vmd by Molmil
Crystal structure of UBR-box from UBR6 in a domain-swapping conformation
Descriptor: 1,2-ETHANEDIOL, F-box only protein 11, ZINC ION
Authors:Munoz-Escobar, J, Kozlov, G, Gehring, K.
Deposit date:2017-04-27
Release date:2017-07-12
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.202 Å)
Cite:Crystal structure of the UBR-box from UBR6/FBXO11 reveals domain swapping mediated by zinc binding.
Protein Sci., 26, 2017
8SMO
DownloadVisualize
BU of 8smo by Molmil
Crystal structure of the complex between truncated MLLE domain of PABPC1 and engineered superPAM2 peptide
Descriptor: Polyadenylate-binding protein 1, SULFATE ION, superPAM2
Authors:Kozlov, G, Gehring, K.
Deposit date:2023-04-26
Release date:2024-05-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of the complex between truncated MLLE domain of PABPC1 and engineered superPAM2 peptide
To Be Published
8CT8
DownloadVisualize
BU of 8ct8 by Molmil
Crystal structure of Drosophila melanogaster PRL/CBS-pair domain complex
Descriptor: IODIDE ION, PRL-1 phosphatase, Unextended protein
Authors:Fakih, R, Goldstein, R.H, Kozlov, G, Gehring, K.
Deposit date:2022-05-13
Release date:2023-03-01
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Burst kinetics and CNNM binding are evolutionarily conserved properties of phosphatases of regenerating liver.
J.Biol.Chem., 299, 2023
1ME1
DownloadVisualize
BU of 1me1 by Molmil
Chimeric hairpin with 2',5'-linked RNA loop and RNA stem
Descriptor: 5'-R(*GP*GP*AP*CP*(U25)P*(U25)P*(C25)P*(5GP)P*GP*UP*CP*C)-3'
Authors:Denisov, A.Y, Hannoush, R.N, Gehring, K, Damha, M.J.
Deposit date:2002-08-07
Release date:2003-08-19
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:A Novel RNA Motif Based on the Structure of Unusually Stable 2',5'-Linked r(UUCG) Loops
J.AM.CHEM.SOC., 125, 2003
1MK3
DownloadVisualize
BU of 1mk3 by Molmil
SOLUTION STRUCTURE OF HUMAN BCL-W PROTEIN
Descriptor: Apoptosis regulator Bcl-W
Authors:Denisov, A.Y, Madiraju, M.S, Chen, G, Khadir, A, Beauparlant, P, Attardo, G, Shore, G.C, Gehring, K.
Deposit date:2002-08-28
Release date:2003-06-03
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of human BCL-w: modulation of ligand binding by the C-terminal helix
J.BIOL.CHEM., 278, 2003
6DJW
DownloadVisualize
BU of 6djw by Molmil
Crystal Structure of pParkin (REP and RING2 deleted)-pUb-UbcH7 complex
Descriptor: RBR-type E3 ubiquitin transferase,RBR-type E3 ubiquitin transferase, Ubiquitin, Ubiquitin-conjugating enzyme E2 L3, ...
Authors:Sauve, V, Sung, G, Trempe, J.F, Gehring, K.
Deposit date:2018-05-26
Release date:2018-07-04
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.801 Å)
Cite:Mechanism of parkin activation by phosphorylation.
Nat. Struct. Mol. Biol., 25, 2018
6DJ3
DownloadVisualize
BU of 6dj3 by Molmil
Crystal structure of CNNM2 cyclic nucleotide-binding homology domain
Descriptor: 1,2-ETHANEDIOL, Metal transporter CNNM2
Authors:Chen, Y.S, Gehring, K.
Deposit date:2018-05-24
Release date:2018-10-31
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The cyclic nucleotide-binding homology domain of the integral membrane protein CNNM mediates dimerization and is required for Mg2+efflux activity.
J. Biol. Chem., 293, 2018
6PIK
DownloadVisualize
BU of 6pik by Molmil
Tetrameric cryo-EM ArnA
Descriptor: Bifunctional polymyxin resistance protein ArnA, UDP-4-amino-4-deoxy-L-arabinose formyltransferase
Authors:Yang, M, Gehring, K.
Deposit date:2019-06-26
Release date:2019-07-31
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (7.8 Å)
Cite:Cryo-electron microscopy structures of ArnA, a key enzyme for polymyxin resistance, revealed unexpected oligomerizations and domain movements.
J.Struct.Biol., 208, 2019
6PIH
DownloadVisualize
BU of 6pih by Molmil
Hexameric ArnA cryo-EM structure
Descriptor: Bifunctional polymyxin resistance protein ArnA, UDP-4-amino-4-deoxy-L-arabinose formyltransferase
Authors:Yang, M, Gehring, K.
Deposit date:2019-06-26
Release date:2019-07-31
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:Cryo-electron microscopy structures of ArnA, a key enzyme for polymyxin resistance, revealed unexpected oligomerizations and domain movements.
J.Struct.Biol., 208, 2019
6B3Y
DownloadVisualize
BU of 6b3y by Molmil
Crystal structure of the PH-like domain from DENND3
Descriptor: DENN domain-containing protein 3
Authors:Kozlov, G, Xu, J, Menade, M, Beaugrand, M, Pan, T, McPherson, P.S, Gehring, K.
Deposit date:2017-09-25
Release date:2018-01-24
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.852 Å)
Cite:A PH-like domain of the Rab12 guanine nucleotide exchange factor DENND3 binds actin and is required for autophagy.
J. Biol. Chem., 293, 2018
8G91
DownloadVisualize
BU of 8g91 by Molmil
LaM domain of human LARP1 in complex with Rp phosphorothioate isomer of AAAAA(SRA) RNA
Descriptor: GLYCEROL, Isoform 2 of La-related protein 1, RNA (5'-R(*AP*AP*AP*AP*AP*(SRA))-3')
Authors:Kozlov, G, Jiang, J, Gehring, K.
Deposit date:2023-02-20
Release date:2024-04-17
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural insights into RNA binding by the LaM domain of LARP1
To Be Published
8G90
DownloadVisualize
BU of 8g90 by Molmil
LaM domain of human LARP1 in complex with Sp phosphorothioate isomer of AAAAA(SRA) RNA
Descriptor: Isoform 2 of La-related protein 1, RNA (5'-R(*AP*AP*AP*AP*AP*(SRA))-3')
Authors:Kozlov, G, Jiang, J, Gehring, K.
Deposit date:2023-02-20
Release date:2024-04-17
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural insights into RNA binding by the LaM domain of LARP1
To Be Published
3KUT
DownloadVisualize
BU of 3kut by Molmil
Crystal structure of the MLLE domain of poly(A)-binding protein in complex with the binding region of Paip2
Descriptor: CHLORIDE ION, PAIP2 protein, Polyadenylate-binding protein 1
Authors:Kozlov, G, Gehring, K.
Deposit date:2009-11-27
Release date:2010-02-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Molecular Determinants of PAM2 Recognition by the MLLE Domain of Poly(A)-Binding Protein.
J.Mol.Biol., 397, 2010
3KUI
DownloadVisualize
BU of 3kui by Molmil
Crystal structure of C-terminal domain of PABPC1 in complex with binding region of eRF3a
Descriptor: GSPT1 protein, Polyadenylate-binding protein 1, SULFATE ION, ...
Authors:Kozlov, G, Gehring, K.
Deposit date:2009-11-27
Release date:2010-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular basis of eRF3 recognition by the MLLE domain of poly(A)-binding protein.
Plos One, 5, 2010
3KUR
DownloadVisualize
BU of 3kur by Molmil
Crystal structure of the MLLE domain of poly(A)-binding protein
Descriptor: CHLORIDE ION, Polyadenylate-binding protein 1
Authors:Kozlov, G, Gehring, K.
Deposit date:2009-11-27
Release date:2010-02-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular Determinants of PAM2 Recognition by the MLLE Domain of Poly(A)-Binding Protein.
J.Mol.Biol., 397, 2010
3KUJ
DownloadVisualize
BU of 3kuj by Molmil
Crystal structure of C-terminal domain of PABPC1 in complex with binding region of eRF3a
Descriptor: GSPT1 protein, Polyadenylate-binding protein 1, SULFATE ION
Authors:Kozlov, G, Gehring, K.
Deposit date:2009-11-27
Release date:2010-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Molecular basis of eRF3 recognition by the MLLE domain of poly(A)-binding protein.
Plos One, 5, 2010
3KUS
DownloadVisualize
BU of 3kus by Molmil
Crystal structure of the MLLE domain of poly(A)-binding protein in complex with the binding region of Paip2
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, PAIP2 protein, ...
Authors:Kozlov, G, Gehring, K.
Deposit date:2009-11-27
Release date:2010-02-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Molecular Determinants of PAM2 Recognition by the MLLE Domain of Poly(A)-Binding Protein.
J.Mol.Biol., 397, 2010
8GK6
DownloadVisualize
BU of 8gk6 by Molmil
Crystal structure of extracellular domain of CNNM4 from Echinococcus granulosus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Metal transporter CNNM4, ...
Authors:Shahsavan, A, Gehring, K.
Deposit date:2023-03-17
Release date:2023-12-13
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Dimerization of the CNNM extracellular domain.
Protein Sci., 33, 2024
4K95
DownloadVisualize
BU of 4k95 by Molmil
Crystal Structure of Parkin
Descriptor: E3 ubiquitin-protein ligase parkin, ZINC ION
Authors:Seirafi, M, Menade, M, Sauve, V, Kozlov, G, Trempe, J.-F, Nagar, B, Gehring, K.
Deposit date:2013-04-19
Release date:2013-05-15
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (6.499 Å)
Cite:Structure of parkin reveals mechanisms for ubiquitin ligase activation.
Science, 340, 2013
4K7D
DownloadVisualize
BU of 4k7d by Molmil
Crystal Structure of Parkin C-terminal RING domains
Descriptor: CHLORIDE ION, E3 ubiquitin-protein ligase parkin, MALONATE ION, ...
Authors:Sauve, V, Trempe, J.-F, Menade, M, Gehring, K.
Deposit date:2013-04-17
Release date:2013-05-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of parkin reveals mechanisms for ubiquitin ligase activation.
Science, 340, 2013

224004

数据于2024-08-21公开中

PDB statisticsPDBj update infoContact PDBjnumon