Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4D1Q
DownloadVisualize
BU of 4d1q by Molmil
Hermes transposase bound to its terminal inverted repeat
Descriptor: SODIUM ION, TERMINAL INVERTED REPEAT, TRANSPOSASE
Authors:Hickman, A.B, Ewis, H, Li, X, Knapp, J, Laver, T, Doss, A.L, Tolun, G, Steven, A, Grishaev, A, Bax, A, Atkinson, P, Craig, N.L, Dyda, F.
Deposit date:2014-05-04
Release date:2014-07-30
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structural Basis of Hat Transposon End Recognition by Hermes, an Octameric DNA Transposase from Musca Domestica.
Cell(Cambridge,Mass.), 158, 2014
6HI5
DownloadVisualize
BU of 6hi5 by Molmil
The ATAD2 bromodomain in complex with compound 8
Descriptor: (2~{R})-2-azanyl-~{N}-[5-(5-azanylpyridin-3-yl)-4-ethanoyl-1,3-thiazol-2-yl]propanamide, ATPase family AAA domain-containing protein 2, SULFATE ION
Authors:Sledz, P, Caflisch, A.
Deposit date:2018-08-29
Release date:2019-02-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Hitting a Moving Target: Simulation and Crystallography Study of ATAD2 Bromodomain Blockers.
Acs Med.Chem.Lett., 11, 2020
6HIA
DownloadVisualize
BU of 6hia by Molmil
The ATAD2 bromodomain in complex with compound 13
Descriptor: (2~{R})-~{N}-[5-(5-azanylpyridin-3-yl)-4-ethanoyl-1,3-thiazol-2-yl]-2-carbamimidamido-propanamide, ATPase family AAA domain-containing protein 2, SULFATE ION
Authors:Sledz, P, Caflisch, A.
Deposit date:2018-08-29
Release date:2019-02-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.897 Å)
Cite:Hitting a Moving Target: Simulation and Crystallography Study of ATAD2 Bromodomain Blockers.
Acs Med.Chem.Lett., 11, 2020
4HYS
DownloadVisualize
BU of 4hys by Molmil
Crystal structure of JNK1 in complex with JIP1 peptide and 4-(4-Indazol-1-yl-pyrimidin-2-ylamino)-cyclohexan
Descriptor: C-Jun-amino-terminal kinase-interacting protein 1, Mitogen-activated protein kinase 8, trans-4-{[4-(1H-indazol-1-yl)pyrimidin-2-yl]amino}cyclohexanol
Authors:Kuglstatter, A, Janson, C.
Deposit date:2012-11-14
Release date:2013-10-30
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.415 Å)
Cite:Development of amino-pyrimidine inhibitors of c-Jun N-terminal kinase (JNK): kinase profiling guided optimization of a 1,2,3-benzotriazole lead.
Bioorg.Med.Chem.Lett., 23, 2013
6HOD
DownloadVisualize
BU of 6hod by Molmil
TRANSCRIPTIONAL REPRESSOR ETHR FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH BDM44848
Descriptor: 4-[3-(phenylsulfonylamino)prop-1-ynyl]benzenesulfonamide, HTH-type transcriptional regulator EthR
Authors:Wintjens, R, Wohlkonig, A.
Deposit date:2018-09-17
Release date:2018-12-26
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A comprehensive analysis of the protein-ligand interactions in crystal structures of Mycobacterium tuberculosis EthR.
Biochim Biophys Acta Proteins Proteom, 1867, 2018
4HYU
DownloadVisualize
BU of 4hyu by Molmil
Crystal structure of JNK1 in complex with JIP1 peptide and 4-{4-[4-(3-Methanesulfonyl-propoxy)-indazol-1-yl]-pyrimidin-2-ylamino}-cyclohexan
Descriptor: C-Jun-amino-terminal kinase-interacting protein 1, Mitogen-activated protein kinase 8, trans-4-[(4-{4-[3-(methylsulfonyl)propoxy]-1H-indazol-1-yl}pyrimidin-2-yl)amino]cyclohexanol
Authors:Kuglstatter, A, Ghate, M.
Deposit date:2012-11-14
Release date:2013-10-30
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.152 Å)
Cite:Development of amino-pyrimidine inhibitors of c-Jun N-terminal kinase (JNK): kinase profiling guided optimization of a 1,2,3-benzotriazole lead.
Bioorg.Med.Chem.Lett., 23, 2013
5FU3
DownloadVisualize
BU of 5fu3 by Molmil
The complexity of the Ruminococcus flavefaciens cellulosome reflects an expansion in glycan recognition
Descriptor: CBM74-RFGH5, SODIUM ION, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Basle, A, Luis, A.S, Venditto, I, Gilbert, H.J.
Deposit date:2016-01-20
Release date:2016-06-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Complexity of the Ruminococcus Flavefaciens Cellulosome Reflects an Expansion in Glycan Recognition.
Proc.Natl.Acad.Sci.USA, 113, 2016
6V23
DownloadVisualize
BU of 6v23 by Molmil
Ligand-free L-aspraginase II from E. coli (EcAII)
Descriptor: L-asparaginase 2
Authors:Lubkowski, J, Wlodawer, A.
Deposit date:2019-11-22
Release date:2020-05-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Mechanism of Catalysis by l-Asparaginase.
Biochemistry, 59, 2020
6V2B
DownloadVisualize
BU of 6v2b by Molmil
Complex of double mutant (T89V,K162T) of E. coli L-asparaginase II with L-Asn
Descriptor: ASPARAGINE, CITRIC ACID, L-asparaginase 2
Authors:Lubkowski, J, Wlodawer, A.
Deposit date:2019-11-22
Release date:2020-05-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Mechanism of Catalysis by l-Asparaginase.
Biochemistry, 59, 2020
6VFK
DownloadVisualize
BU of 6vfk by Molmil
De novo designed tetrahedral nanoparticle T33_dn10 displaying 4 copies of BG505-SOSIP trimer on the surface
Descriptor: BG505-SOSIP-T33_dn10A, T33_dn10B
Authors:Antanasijevic, A, Ward, A.B.
Deposit date:2020-01-05
Release date:2020-07-22
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.25 Å)
Cite:Structural and functional evaluation of de novo-designed, two-component nanoparticle carriers for HIV Env trimer immunogens.
Plos Pathog., 16, 2020
6XXO
DownloadVisualize
BU of 6xxo by Molmil
Crystal structure of NB8, a nanobody targeting prostate specific membrane antigen
Descriptor: NB_8
Authors:Shahar, A, Rosenfeld, L, Papo, N.
Deposit date:2020-01-28
Release date:2020-06-10
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Nanobodies Targeting Prostate-Specific Membrane Antigen for the Imaging and Therapy of Prostate Cancer.
J.Med.Chem., 63, 2020
6XXP
DownloadVisualize
BU of 6xxp by Molmil
Crystal structure of NB37, a nanobody targeting prostate specific membrane antigen
Descriptor: NB_37
Authors:Shahar, A, Rosenfeld, L, Papo, N.
Deposit date:2020-01-28
Release date:2020-06-10
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Nanobodies Targeting Prostate-Specific Membrane Antigen for the Imaging and Therapy of Prostate Cancer.
J.Med.Chem., 63, 2020
6XZ4
DownloadVisualize
BU of 6xz4 by Molmil
Crystal structure of TLNRD1
Descriptor: Talin rod domain-containing protein 1
Authors:Cowell, A, Singh, A.K, Brown, D.G, Goult, B.T.
Deposit date:2020-02-01
Release date:2020-05-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Talin rod domain-containing protein 1 (TLNRD1) is a novel actin-bundling protein which promotes filopodia formation.
J.Cell Biol., 220, 2021
7AZT
DownloadVisualize
BU of 7azt by Molmil
X-ray crystallographic structure of (6-4)photolyase from Drosophila melanogaster at room temperature
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, RE11660p
Authors:Cellini, A, Wahlgren, W.Y, Henry, L, Westenhoff, S, Pandey, S.
Deposit date:2020-11-17
Release date:2021-08-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:The three-dimensional structure of Drosophila melanogaster (6-4) photolyase at room temperature.
Acta Crystallogr D Struct Biol, 77, 2021
7ATP
DownloadVisualize
BU of 7atp by Molmil
2.0 angstrom structure in complex with Ca of plant Extended Synaptotagmin 1, C2A domain
Descriptor: CALCIUM ION, CHLORIDE ION, Synaptotagmin-1, ...
Authors:Benavente, J.L, Albert, A.
Deposit date:2020-10-30
Release date:2021-08-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The structure and flexibility analysis of the Arabidopsis synaptotagmin 1 reveal the basis of its regulation at membrane contact sites.
Life Sci Alliance, 4, 2021
6V27
DownloadVisualize
BU of 6v27 by Molmil
Complex of double mutant (T89V,K162T) of E. coli L-asparaginase II with L-Asp
Descriptor: L-asparaginase 2
Authors:Lubkowski, J, Wlodawer, A.
Deposit date:2019-11-22
Release date:2020-05-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Mechanism of Catalysis by l-Asparaginase.
Biochemistry, 59, 2020
7AYV
DownloadVisualize
BU of 7ayv by Molmil
X-ray crystallographic structure of (6-4)photolyase from Drosophila melanogaster at cryogenic temperature
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, RE11660p, ...
Authors:Cellini, A, Wahlgren, W.Y, Henry, L, Westenhoff, S.
Deposit date:2020-11-13
Release date:2021-08-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:The three-dimensional structure of Drosophila melanogaster (6-4) photolyase at room temperature.
Acta Crystallogr D Struct Biol, 77, 2021
6V2C
DownloadVisualize
BU of 6v2c by Molmil
Complex of mutant (K162M) of E. coli L-asparaginase II with L-Asp. Covalent acyl-enzyme intermediate and tetrahedral intermediate
Descriptor: L-asparaginase 2
Authors:Lubkowski, J, Wlodawer, A.
Deposit date:2019-11-22
Release date:2020-05-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Mechanism of Catalysis by l-Asparaginase.
Biochemistry, 59, 2020
7AS6
DownloadVisualize
BU of 7as6 by Molmil
2.0 angstrom structure of plant Extended Synaptotagmin 1, C2A domain
Descriptor: 1,2-ETHANEDIOL, CADMIUM ION, CHLORIDE ION, ...
Authors:Benavente, J.L, Albert, A.
Deposit date:2020-10-27
Release date:2021-08-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:The structure and flexibility analysis of the Arabidopsis synaptotagmin 1 reveal the basis of its regulation at membrane contact sites.
Life Sci Alliance, 4, 2021
6XOK
DownloadVisualize
BU of 6xok by Molmil
X-ray structure of the rhombohedral form of the lipase from Thermomyces lanuginosa at 1.3 A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-hydroxy-3-(octadecanoyloxy)propyl pentacosanoate, Lipase, ...
Authors:McPherson, A.
Deposit date:2020-07-07
Release date:2020-10-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:The crystal Structures of Thermomyces (Humicola) lanuginosa lipase in complex with enzymatic reactants
Current Enzyme Inhibition, 16, 2020
5MN0
DownloadVisualize
BU of 5mn0 by Molmil
ABA RECEPTOR FROM CITRUS, CSPYL1
Descriptor: (2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid, CHLORIDE ION, CSPYL1, ...
Authors:Moreno-Alvero, M, Yunta, C, Gonzalez-Guzman, M, Arbona, V, Granell, A, Martinez-Ripoll, M, Infantes, L, Rodriguez, P.L, Albert, A.
Deposit date:2016-12-12
Release date:2017-08-02
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of Ligand-Bound Intermediates of Crop ABA Receptors Highlights PP2C as Necessary ABA Co-receptor.
Mol Plant, 10, 2017
6XXT
DownloadVisualize
BU of 6xxt by Molmil
The crystal structure of hCA II in complex with a 4-(4-aroylpiperazine-1-carbonyl)benzenesulfonamide derivative.
Descriptor: 4-[4-(phenylcarbonyl)piperazin-1-yl]carbonylbenzenesulfonamide, Carbonic anhydrase 2, GLYCEROL, ...
Authors:Di Fiore, A, De Simone, G.
Deposit date:2020-01-28
Release date:2020-06-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Looking toward the Rim of the Active Site Cavity of Druggable Human Carbonic Anhydrase Isoforms.
Acs Med.Chem.Lett., 11, 2020
3B1J
DownloadVisualize
BU of 3b1j by Molmil
Crystal structure of Glyceraldehyde-3-Phosphate Dehydrogenase complexed with CP12 in the presence of copper from Synechococcus elongatus
Descriptor: COPPER (II) ION, CP12, Glyceraldehyde 3-phosphate dehydrogenase (NADP+), ...
Authors:Matsumura, H, Kai, A, Inoue, T.
Deposit date:2011-07-04
Release date:2012-01-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure Basis for the Regulation of Glyceraldehyde-3-Phosphate Dehydrogenase Activity via the Intrinsically Disordered Protein CP12.
Structure, 19, 2011
1YKQ
DownloadVisualize
BU of 1ykq by Molmil
Crystal structure of Diels-Alder ribozyme
Descriptor: CADMIUM ION, Diels-Alder ribozyme, MAGNESIUM ION
Authors:Serganov, A, Keiper, S, Malinina, L, Tereshko, V, Skripkin, E, Hobartner, C, Polonskaia, A, Phan, A.T, Wombacher, R, Micura, R, Dauter, Z, Jaschke, A, Patel, D.J.
Deposit date:2005-01-18
Release date:2005-02-22
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural basis for Diels-Alder ribozyme-catalyzed carbon-carbon bond formation.
Nat.Struct.Mol.Biol., 12, 2005
4ZM3
DownloadVisualize
BU of 4zm3 by Molmil
Crystal structure of PLP-Dependent 3-Aminobenzoate Synthase PctV wild-type
Descriptor: Aminotransferase, DI(HYDROXYETHYL)ETHER, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Hirayama, A, Miyanaga, A, Kudo, F, Eguchi, T.
Deposit date:2015-05-02
Release date:2015-10-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Mechanism-Based Trapping of the Quinonoid Intermediate by Using the K276R Mutant of PLP-Dependent 3-Aminobenzoate Synthase PctV in the Biosynthesis of Pactamycin.
Chembiochem, 16, 2015

222415

数据于2024-07-10公开中

PDB statisticsPDBj update infoContact PDBjnumon