Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7SGN
DownloadVisualize
BU of 7sgn by Molmil
Crystal structure of periplasmic domain of Helicobacter pylori FliL (residues 81 to 183) (crystal form A)
分子名称: Flagellar protein FliL
著者Chan, K.L, Peterson, B, Khan, M.F, Roujeinikova, A.
登録日2021-10-06
公開日2022-03-23
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献The flagellar motor protein FliL forms a scaffold of circumferentially positioned rings required for stator activation.
Proc.Natl.Acad.Sci.USA, 119, 2022
7SGP
DownloadVisualize
BU of 7sgp by Molmil
Crystal structure of periplasmic domain of Helicobacter pylori FliL (residues 81 to 183) (crystal form C)
分子名称: Flagellar protein FliL
著者Chan, K.L, Peterson, B, Khan, M.F, Roujeinikova, A.
登録日2021-10-06
公開日2022-03-23
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The flagellar motor protein FliL forms a scaffold of circumferentially positioned rings required for stator activation.
Proc.Natl.Acad.Sci.USA, 119, 2022
5E6H
DownloadVisualize
BU of 5e6h by Molmil
A Linked Jumonji Domain of the KDM5A Lysine Demethylase
分子名称: 2-OXOGLUTARIC ACID, GLYCEROL, Lysine-specific demethylase 5A, ...
著者Horton, J.R, Cheng, X.
登録日2015-10-09
公開日2015-12-16
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.238 Å)
主引用文献Characterization of a Linked Jumonji Domain of the KDM5/JARID1 Family of Histone H3 Lysine 4 Demethylases.
J.Biol.Chem., 291, 2016
7YW2
DownloadVisualize
BU of 7yw2 by Molmil
Crystal structure of tRNA 2'-phosphotransferase from Mus musculus
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, GLYCINE, ...
著者Yang, X.Y, Liu, X.H.
登録日2022-08-21
公開日2023-07-26
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.23 Å)
主引用文献Structural and biochemical insights into the molecular mechanism of TRPT1 for nucleic acid ADP-ribosylation.
Nucleic Acids Res., 51, 2023
7YW3
DownloadVisualize
BU of 7yw3 by Molmil
Crystal structure of tRNA 2'-phosphotransferase from Homo sapiens
分子名称: 1,2-ETHANEDIOL, [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate, tRNA 2'-phosphotransferase 1
著者Yang, X.Y, Liu, X.H.
登録日2022-08-21
公開日2023-07-26
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural and biochemical insights into the molecular mechanism of TRPT1 for nucleic acid ADP-ribosylation.
Nucleic Acids Res., 51, 2023
7YW4
DownloadVisualize
BU of 7yw4 by Molmil
Crystal structure of tRNA 2'-phosphotransferase from Saccharomyces cerevisiae
分子名称: D(-)-TARTARIC ACID, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, tRNA 2'-phosphotransferase
著者Yang, X.Y, Liu, X.H.
登録日2022-08-21
公開日2023-07-26
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.18 Å)
主引用文献Structural and biochemical insights into the molecular mechanism of TRPT1 for nucleic acid ADP-ribosylation.
Nucleic Acids Res., 51, 2023
5YIJ
DownloadVisualize
BU of 5yij by Molmil
Structure of a Legionella effector with substrates
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, SdeA, Ubiquitin
著者Feng, Y, Mu, Y, Wang, H.
登録日2017-10-05
公開日2018-05-30
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.18 Å)
主引用文献Structural basis of ubiquitin modification by the Legionella effector SdeA.
Nature, 557, 2018
7JU6
DownloadVisualize
BU of 7ju6 by Molmil
Structure of RET protein tyrosine kinase in complex with selpercatinib
分子名称: FORMIC ACID, Proto-oncogene tyrosine-protein kinase receptor Ret, Selpercatinib
著者Terzyan, S.S, Shen, T, Wu, J, Mooers, B.H.M.
登録日2020-08-19
公開日2020-11-11
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.06 Å)
主引用文献Structural basis of acquired resistance to selpercatinib and pralsetinib mediated by non-gatekeeper RET mutations.
Ann Oncol, 32, 2021
2X51
DownloadVisualize
BU of 2x51 by Molmil
M6 delta Insert1
分子名称: CALCIUM ION, CALMODULIN, GLYCEROL, ...
著者Squires, G, Houdusse, A.
登録日2010-02-04
公開日2011-01-26
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Role of Insert-1 of Myosin Vi in Modulating Nucleotide Affinity.
J.Biol.Chem., 286, 2011
7YQK
DownloadVisualize
BU of 7yqk by Molmil
cryo-EM structure of gammaH2AXK15ub-H4K20me2 nucleosome bound to 53BP1
分子名称: DNA (145-MER), Histone H2AX, Histone H2B, ...
著者Ai, H.S, GuoChao, C, Qingyue, G, Ze-Bin, T, Zhiheng, D, Xin, L, Fan, Y, Ziyu, X, Jia-Bin, L, Changlin, T, Liu, L.
登録日2022-08-07
公開日2022-08-17
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (3.38 Å)
主引用文献Chemical Synthesis of Post-Translationally Modified H2AX Reveals Redundancy in Interplay between Histone Phosphorylation, Ubiquitination, and Methylation on the Binding of 53BP1 with Nucleosomes.
J.Am.Chem.Soc., 144, 2022
7JU5
DownloadVisualize
BU of 7ju5 by Molmil
Structure of RET protein tyrosine kinase in complex with pralsetinib
分子名称: FORMIC ACID, Pralsetinib, Proto-oncogene tyrosine-protein kinase receptor Ret
著者Terzyan, S.S, Shen, T, Wu, J, Mooers, B.H.M.
登録日2020-08-19
公開日2020-11-11
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis of acquired resistance to selpercatinib and pralsetinib mediated by non-gatekeeper RET mutations.
Ann Oncol, 32, 2021
7JYD
DownloadVisualize
BU of 7jyd by Molmil
Human Liver Receptor Homolog-1 in Complex with 10CA and a Fragment of Tif2
分子名称: 10-[(3aR,6R,6aR)-6-hydroxy-3-phenyl-3a-(1-phenylethenyl)-1,3a,4,5,6,6a-hexahydropentalen-2-yl]decanoic acid, Nuclear receptor coactivator 2, Nuclear receptor subfamily 5 group A member 2
著者D'Agostino, E.H, Mays, S.G, Ortlund, E.A.
登録日2020-08-30
公開日2022-03-02
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Tapping into a phospholipid-LRH-1 axis yields a powerful anti-inflammatory agent with in vivo activity against colitis
To Be Published
7JYE
DownloadVisualize
BU of 7jye by Molmil
Human Liver Receptor Homolog-1 in Complex with 9ChoP and a Fragment of Tif2
分子名称: 9-[(3~{a}~{R},6~{R},6~{a}~{R})-6-oxidanyl-3-phenyl-3~{a}-(1-phenylethenyl)-4,5,6,6~{a}-tetrahydro-1~{H}-pentalen-2-yl]nonyl 2-(trimethyl-$l^{4}-azanyl)ethyl hydrogen phosphate, Nuclear receptor coactivator 2, Nuclear receptor subfamily 5 group A member 2
著者D'Agostino, E.H, Mays, S.G, Ortlund, E.A.
登録日2020-08-30
公開日2022-03-02
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.551 Å)
主引用文献Tapping into a phospholipid-LRH-1 axis yields a powerful anti-inflammatory agent with in vivo activity against colitis
To Be Published
6KIK
DownloadVisualize
BU of 6kik by Molmil
Crystal structure of a thermostable aldo-keto reductase Tm1743 in complex with inhibitor tolrestat
分子名称: Oxidoreductase, aldo/keto reductase family, TOLRESTAT
著者Zhang, C.Y, Liu, X.M, Wang, C, Tang, W.R.
登録日2019-07-18
公開日2019-09-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.601 Å)
主引用文献Tolrestat acts atypically as a competitive inhibitor of the thermostable aldo-keto reductase Tm1743 from Thermotoga maritima.
Febs Lett., 594, 2020
6KIY
DownloadVisualize
BU of 6kiy by Molmil
Crystal structure of a thermostable aldo-keto reductase Tm1743 in complex with inhibitor Epalrestat
分子名称: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Oxidoreductase, aldo/keto reductase family, ...
著者Zhang, C.Y, Liu, X.M, Wang, C, Min, Z.Z, Xu, X.L.
登録日2019-07-20
公開日2019-09-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Tolrestat acts atypically as a competitive inhibitor of the thermostable aldo-keto reductase Tm1743 from Thermotoga maritima.
Febs Lett., 594, 2020
6KY6
DownloadVisualize
BU of 6ky6 by Molmil
Crystal structure of a thermostable aldo-keto reductase Tm1743 in complexs with inhibitor epalrestat in space group P3221cc
分子名称: 2,5-diketo-D-gluconic acid reductase, CHLORIDE ION, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
著者Zhang, C.Y, Min, Z.Z, Liu, X.M, Wang, C, Tang, W.R.
登録日2019-09-16
公開日2019-10-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Tolrestat acts atypically as a competitive inhibitor of the thermostable aldo-keto reductase Tm1743 from Thermotoga maritima.
Febs Lett., 594, 2020
5KCY
DownloadVisualize
BU of 5kcy by Molmil
Crystal structure of the aromatic prenyltransferase AtaPT from Aspergillus terreus A8-4 in complex with geranyl S-thiolodiphosphate and (+)-butyrolactone II
分子名称: GERANYL S-THIOLODIPHOSPHATE, aromatic prenyltransferase, methyl (2~{R})-3-(4-hydroxyphenyl)-2-[(4-hydroxyphenyl)methyl]-4-oxidanyl-5-oxidanylidene-furan-2-carboxylate
著者Sun, F, Gao, B.
登録日2016-06-07
公開日2016-12-21
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Molecular insights into the enzyme promiscuity of an aromatic prenyltransferase.
Nat. Chem. Biol., 13, 2017
5KD0
DownloadVisualize
BU of 5kd0 by Molmil
Crystal structure of the aromatic prenyltransferase AtaPT(E91A) mutant from Aspergillus terreus A8-4 in complex with geranyl S-thiolodiphosphate and (+)-butyrolactone II
分子名称: GERANYL S-THIOLODIPHOSPHATE, aromatic prenyltransferase, methyl (2~{R})-3-(4-hydroxyphenyl)-2-[(4-hydroxyphenyl)methyl]-4-oxidanyl-5-oxidanylidene-furan-2-carboxylate
著者Sun, F, Gao, B.
登録日2016-06-07
公開日2016-12-21
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.82 Å)
主引用文献Molecular insights into the enzyme promiscuity of an aromatic prenyltransferase.
Nat. Chem. Biol., 13, 2017
6IHH
DownloadVisualize
BU of 6ihh by Molmil
Crystal structure of RasADH F12 from Ralstonia.sp in complex with NADPH and A6O
分子名称: (2R,3S)-2-ethyl-2-[(2E)-2-(6-methoxy-3,4-dihydro-2H-naphthalen-1-ylidene)ethyl]-3-oxidanyl-cyclopentan-1-one, Alclohol dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Zhang, H.L, Chen, X, Liu, W.D, Wu, Q.Q, Zhu, D.M.
登録日2018-09-30
公開日2019-10-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Efficient reductive desymmetrization of bulky 1,3-cyclodiketones enabled by structure-guided directed evolution of a carbonyl reductase.
Nat Catal, 2, 2019
5KD6
DownloadVisualize
BU of 5kd6 by Molmil
Crystal structure of the aromatic prenyltransferase AtaPT from Aspergillus terreus A8-4 in complex with dimethylallyl S-thiolodiphosphate and (-)-butyrolactone II
分子名称: DIMETHYLALLYL S-THIOLODIPHOSPHATE, aromatic prenyltransferase, methyl (2S)-4-hydroxy-3-(4-hydroxyphenyl)-2-[(4-hydroxyphenyl)methyl]-5-oxo-2,5-dihydrofuran-2-carboxylate
著者Sun, F, Gao, B.
登録日2016-06-07
公開日2016-12-21
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Molecular insights into the enzyme promiscuity of an aromatic prenyltransferase.
Nat. Chem. Biol., 13, 2017
5JYC
DownloadVisualize
BU of 5jyc by Molmil
Crystal structure of the E153Q mutant of the CFTR inhibitory factor Cif containing the adducted 14,15-EET hydrolysis intermediate
分子名称: (5~{Z},11~{Z},14~{R},15~{R})-14,15-bis(oxidanyl)icosa-5,8,11-trienoic acid, CFTR inhibitory factor
著者Hvorecny, K.L, Madden, D.R.
登録日2016-05-13
公開日2017-01-11
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Pseudomonas aeruginosa sabotages the generation of host proresolving lipid mediators.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5KCG
DownloadVisualize
BU of 5kcg by Molmil
Crystal structure of the aromatic prenyltransferase AtaPT (apo state) from Aspergillus terreus A8-4
分子名称: aromatic prenyltransferase
著者Sun, F, Gao, B.
登録日2016-06-06
公開日2016-12-21
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Molecular insights into the enzyme promiscuity of an aromatic prenyltransferase.
Nat. Chem. Biol., 13, 2017
5Y6M
DownloadVisualize
BU of 5y6m by Molmil
Zika virus helicase in complex with ADP-AlF3
分子名称: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, Helicase domain from Genome polyprotein, ...
著者Yang, X.Y, Chen, C, Tian, H.L, Chi, H, Mu, Z.Y, Zhang, T.Q, Yang, K.L, Zhao, Q, Liu, X.H, Wang, Z.F, Ji, X.Y, Yang, H.T.
登録日2017-08-12
公開日2018-07-04
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.002 Å)
主引用文献Mechanism of ATP hydrolysis by the Zika virus helicase.
FASEB J., 32, 2018
8YBN
DownloadVisualize
BU of 8ybn by Molmil
Crystal structure of nanobody SEB-Nb8 bound to staphylococcal enterotoxin B (SEB)
分子名称: Enterotoxin type B, nanobody SEB-Nb8
著者Ding, Y, Zong, X, Liu, R, Liu, P.
登録日2024-02-15
公開日2024-12-25
実験手法X-RAY DIFFRACTION (2.18 Å)
主引用文献Structural insights into the binding of nanobodies to the Staphylococcal enterotoxin B.
Int.J.Biol.Macromol., 276, 2024
8YBO
DownloadVisualize
BU of 8ybo by Molmil
Crystal structure of nanobody SEB-Nb11 bound to staphylococcal enterotoxin B (SEB)
分子名称: Enterotoxin type B, nanobody SEB-Nb11
著者Ding, Y, Zong, X, Liu, R, Liu, P.
登録日2024-02-15
公開日2024-12-25
最終更新日2025-01-01
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献Structural insights into the binding of nanobodies to the Staphylococcal enterotoxin B.
Int.J.Biol.Macromol., 276, 2024

238582

件を2025-07-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon