Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7ZH7
DownloadVisualize
BU of 7zh7 by Molmil
Cryo-EM structure of ex vivo AA amyloid from renal tissue of a short hair cat deceased in a shelter
分子名称: Serum amyloid A protein
著者Schulte, T, Chaves-Sanjuan, A, Ricagno, S.
登録日2022-04-05
公開日2022-11-30
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Cryo-EM structure of ex vivo fibrils associated with extreme AA amyloidosis prevalence in a cat shelter.
Nat Commun, 13, 2022
6GRZ
DownloadVisualize
BU of 6grz by Molmil
Crystal structure of the light chain dimer mH6
分子名称: GLYCEROL, mH6
著者Maritan, M, Ricagno, S, Ambrosetti, A, Oberti, L.
登録日2018-06-13
公開日2019-06-12
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Inherent Biophysical Properties Modulate the Toxicity of Soluble Amyloidogenic Light Chains
J.Mol.Biol., 2020
8Q34
DownloadVisualize
BU of 8q34 by Molmil
Crystal structure of the first bromodomain of human BRD4 in complex with the ligand ZZ001229a
分子名称: 1,2-ETHANEDIOL, Bromodomain-containing protein 4, ~{N}-(1~{H}-imidazo[4,5-b]pyridin-2-ylmethyl)-3-(3-methyl-1,2-diazirin-3-yl)propanamide
著者MacLean, E.M, Gao, Q, Williams, E, Balcomb, B.H, von Delft, F, Bajusz, D, Keeley, A, Abranyi-Balogh, P, Koekemoer, L, Keseru, G.M.
登録日2023-08-03
公開日2024-02-07
最終更新日2024-08-14
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Mapping protein binding sites by photoreactive fragment pharmacophores.
Commun Chem, 7, 2024
4RYX
DownloadVisualize
BU of 4ryx by Molmil
Crystal structure of RPE65 in complex with emixustat and palmitate, P6522 crystal form
分子名称: (1R)-3-amino-1-[3-(cyclohexylmethoxy)phenyl]propan-1-ol, (4S)-2-METHYL-2,4-PENTANEDIOL, FE (II) ION, ...
著者Kiser, P.D, Palczewski, K.
登録日2014-12-17
公開日2015-05-27
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Molecular pharmacodynamics of emixustat in protection against retinal degeneration.
J.Clin.Invest., 125, 2015
4RYY
DownloadVisualize
BU of 4ryy by Molmil
Crystal structure of RPE65 in complex with R-emixustat and palmitate
分子名称: (1R)-3-amino-1-[3-(cyclohexylmethoxy)phenyl]propan-1-ol, FE (II) ION, PALMITIC ACID, ...
著者Kiser, P.D, Palczewski, K.
登録日2014-12-17
公開日2015-05-27
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Molecular pharmacodynamics of emixustat in protection against retinal degeneration.
J.Clin.Invest., 125, 2015
4RYZ
DownloadVisualize
BU of 4ryz by Molmil
Crystal structure of RPE65 in complex with S-emixustat and palmitate
分子名称: (1S)-3-amino-1-[3-(cyclohexylmethoxy)phenyl]propan-1-ol, FE (II) ION, PALMITIC ACID, ...
著者Kiser, P.D, Palczewski, K.
登録日2014-12-17
公開日2015-05-27
最終更新日2021-07-07
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Molecular pharmacodynamics of emixustat in protection against retinal degeneration.
J.Clin.Invest., 125, 2015
4ZHK
DownloadVisualize
BU of 4zhk by Molmil
Crystal structure of RPE65 in complex with MB-002
分子名称: (1R)-1-[3-(cyclohexylmethoxy)phenyl]propane-1,3-diol, (1S)-1-[3-(cyclohexylmethoxy)phenyl]propane-1,3-diol, FE (II) ION, ...
著者Kiser, P.D, Palczewski, K.
登録日2015-04-25
公開日2015-05-27
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Molecular pharmacodynamics of emixustat in protection against retinal degeneration.
J.Clin.Invest., 125, 2015
8F43
DownloadVisualize
BU of 8f43 by Molmil
HNH Nuclease Domain from G. stearothermophilus Cas9, K597A mutant
分子名称: CRISPR-associated endonuclease Cas9
著者D'Ordine, A.M, Belato, H.B, Lisi, G.P, Jogl, G.
登録日2022-11-10
公開日2022-12-21
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献Disruption of electrostatic contacts in the HNH nuclease from a thermophilic Cas9 rewires allosteric motions and enhances high-temperature DNA cleavage.
J.Chem.Phys., 157, 2022
8CPE
DownloadVisualize
BU of 8cpe by Molmil
CryoEM structure of AL55 amyloid fibrils extracted from the kidney of an AL amyloidosis patient.
分子名称: Immunoglobulin lambda light chain
著者Puri, S, Schulte, T, Chaves-Sanjuan, A, Ricagno, S.
登録日2023-03-02
公開日2023-08-16
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献The Cryo-EM STRUCTURE of Renal Amyloid Fibril Suggests Structurally Homogeneous Multiorgan Aggregation in AL Amyloidosis.
J.Mol.Biol., 435, 2023
6O56
DownloadVisualize
BU of 6o56 by Molmil
HNH Nuclease from S. pyogenes Cas9
分子名称: CRISPR-associated endonuclease Cas9/Csn1
著者Newton, J.C, Lisi, G.P, Jogl, G.
登録日2019-03-01
公開日2020-01-15
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Allosteric Motions of the CRISPR-Cas9 HNH Nuclease Probed by NMR and Molecular Dynamics.
J.Am.Chem.Soc., 142, 2020
6H0K
DownloadVisualize
BU of 6h0k by Molmil
Hen egg-white lysozyme structure determined with data from the EuXFEL, the first MHz free electron laser, 7.47 keV photon energy
分子名称: Lysozyme C
著者Gruenbein, M.L, Gorel, A, Stricker, M, Bean, R, Bielecki, J, Doerner, K, Hartmann, E, Hilpert, M, Kloos, M, Letrun, R, Sztuk-Dambietz, J, Mancuso, A, Meserschmidt, M, Nass-Kovacs, G, Ramilli, M, Roome, C.M, Sato, T, Doak, R.B, Shoeman, R.L, Foucar, L, Colletier, J.P, Barends, T.R.M, Stan, C, Schlichting, I.
登録日2018-07-10
公開日2018-09-05
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Megahertz data collection from protein microcrystals at an X-ray free-electron laser.
Nat Commun, 9, 2018
6H0L
DownloadVisualize
BU of 6h0l by Molmil
Hen egg-white lysozyme structure determined with data from the EuXFEL, 9.22 keV photon energy
分子名称: Lysozyme C
著者Gruenbein, M.L, Gorel, A, Stricker, M, Bean, R, Bielecki, J, Doerner, K, Hartmann, E, Hilpert, M, Kloos, M, Letrun, R, Sztuk-Dambietz, J, Mancuso, A, Meserschmidt, M, Nass-Kovacs, G, Ramilli, M, Roome, C.M, Sato, T, Doak, R.B, Shoeman, R.L, Foucar, L, Colletier, J.P, Barends, T.R.M, Stan, C, Schlichting, I.
登録日2018-07-10
公開日2018-09-05
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Megahertz data collection from protein microcrystals at an X-ray free-electron laser.
Nat Commun, 9, 2018
9FAB
DownloadVisualize
BU of 9fab by Molmil
Additional cryo-EM structure of cardiac amyloid AL59 - bent polymorph
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Monoclonal immunoglobulin light chains (LC)
著者Schulte, T, Speranzini, V, Chaves-Sanjuan, A, Milazzo, M, Ricagno, S.
登録日2024-05-10
公開日2024-08-14
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Additional cryo-EM structure of cardiac amyloid AL59 - bent polymorph
To be published
9FAC
DownloadVisualize
BU of 9fac by Molmil
Additional cryo-EM structure of cardiac amyloid AL59 - mixed polymorph
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Monoclonal immunoglobulin light chains (LC)
著者Schulte, T, Speranzini, V, Chaves-Sanjuan, A, Milazzo, M, Ricagno, S.
登録日2024-05-10
公開日2024-08-14
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Helical superstructures between amyloid and collagen in cardiac fibrils from a patient with AL amyloidosis.
Nat Commun, 15, 2024
9FAA
DownloadVisualize
BU of 9faa by Molmil
Cryo-EM structure of cardiac collagen-associated amyloid AL59
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Monoclonal immunoglobulin light chains (LC)
著者Schulte, T, Speranzini, V, Chaves-Sanjuan, A, Milazzo, M, Ricagno, S.
登録日2024-05-10
公開日2024-07-17
最終更新日2024-08-14
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Helical superstructures between amyloid and collagen in cardiac fibrils from a patient with AL amyloidosis.
Nat Commun, 15, 2024
8QWE
DownloadVisualize
BU of 8qwe by Molmil
Ternary complex of ReChb - crRNA - target dsDNA
分子名称: MAGNESIUM ION, ReChb, crRNA, ...
著者Lopez-Alonso, J.P, Ubarretxena-Belandia, I, Tascon, I.
登録日2023-10-19
公開日2024-10-02
実験手法ELECTRON MICROSCOPY (3.14 Å)
主引用文献A resurrected ancestor of Cas12a expands target access and substrate 2 recognition for nucleic-acid editing and detection
Nature Biotechnology, 2024
8QWD
DownloadVisualize
BU of 8qwd by Molmil
Apo ReChb
分子名称: MAGNESIUM ION, ReChb
著者Lopez-Alonso, J.P, Ubarretxena-Belandia, I, Tascon, I.
登録日2023-10-19
公開日2024-10-02
実験手法ELECTRON MICROSCOPY (3.33 Å)
主引用文献A resurrected ancestor of Cas12a expands target access and substrate 2 recognition for nucleic-acid editing and detection
Nature Biotechnology, 2024
8QWF
DownloadVisualize
BU of 8qwf by Molmil
ReChb - crRNA - target dsDNA complex in the presence of collateral dsDNA
分子名称: MAGNESIUM ION, ReChb, crRNA, ...
著者Lopez-Alonso, J.P, Ubarretxena-Belandia, I, Tascon, I.
登録日2023-10-19
公開日2024-10-02
実験手法ELECTRON MICROSCOPY (3.08 Å)
主引用文献A resurrected ancestor of Cas12a expands target access and substrate 2 recognition for nucleic-acid editing and detection
Nature Biotechnology, 2024
6P5F
DownloadVisualize
BU of 6p5f by Molmil
Photoactive Yellow Protein PYP Pure Dark
分子名称: Photoactive yellow protein
著者Pandey, S, Schmidt, M.
登録日2019-05-30
公開日2019-09-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Time-resolved serial femtosecond crystallography at the European XFEL.
Nat.Methods, 17, 2020
6P5E
DownloadVisualize
BU of 6p5e by Molmil
Photoactive Yellow Protein PYP 80ps
分子名称: Photoactive yellow protein
著者Pandey, S, Schmidt, M.
登録日2019-05-30
公開日2019-09-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Time-resolved serial femtosecond crystallography at the European XFEL.
Nat.Methods, 17, 2020
5N9G
DownloadVisualize
BU of 5n9g by Molmil
TFIIIB -TBP/Brf2/DNA and SANT domain of Bdp1-
分子名称: DNA/RNA (25-MER), DNA/RNA (27-MER), SODIUM ION, ...
著者Gouge, J, Vannini, A, Guthertz, N.
登録日2017-02-24
公開日2017-06-14
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Molecular mechanisms of Bdp1 in TFIIIB assembly and RNA polymerase III transcription initiation.
Nat Commun, 8, 2017
6P5D
DownloadVisualize
BU of 6p5d by Molmil
Photoactive Yellow Protein PYP 30ps
分子名称: Photoactive yellow protein
著者Pandey, S, Schmidt, M.
登録日2019-05-30
公開日2019-09-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Time-resolved serial femtosecond crystallography at the European XFEL.
Nat.Methods, 17, 2020
7MPZ
DownloadVisualize
BU of 7mpz by Molmil
HNH Nuclease Domain from G. stearothermophilus Cas9
分子名称: CRISPR-associated endonuclease Cas9
著者D'Ordine, A.M, Belato, H.B, Lisi, G.P, Jogl, G.
登録日2021-05-05
公開日2021-12-22
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Structural and dynamic insights into the HNH nuclease of divergent Cas9 species.
J.Struct.Biol., 214, 2021
8P89
DownloadVisualize
BU of 8p89 by Molmil
X-ray structure of cardiotoxic light chain H3 in complex to neutralizing nanobody B5
分子名称: CHLORIDE ION, Light chain H3, Nanobody B5
著者Broggini, L, Ricagno, S.
登録日2023-05-31
公開日2024-01-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (3.187 Å)
主引用文献Nanobodies counteract the toxicity of an amyloidogenic light chain by stabilizing a partially open dimeric conformation.
J.Mol.Biol., 435, 2023
8P88
DownloadVisualize
BU of 8p88 by Molmil
X-ray structure of cardiotoxic light chain H3 in complex to neutralizing nanobody C4
分子名称: CHLORIDE ION, Light Chain H3, Nanobody C4, ...
著者Broggini, L, Ricagno, S.
登録日2023-05-31
公開日2024-01-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.022 Å)
主引用文献Nanobodies counteract the toxicity of an amyloidogenic light chain by stabilizing a partially open dimeric conformation.
J.Mol.Biol., 435, 2023

227111

件を2024-11-06に公開中

PDB statisticsPDBj update infoContact PDBjnumon