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6M9L
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BU of 6m9l by Molmil
Structure-based Design, Synthesis, and Biological Evaluation of Imidazo[4,5-b]pyridine-2-one based p38 MAP Kinase Inhibitors by scaffold hopping - compound 10
分子名称: 3-benzyl-6-[(2,4-difluorophenyl)amino]-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one, Mitogen-activated protein kinase 14
著者Lane, W, Okada, K.
登録日2018-08-23
公開日2019-04-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Structure-Based Design, Synthesis, and Biological Evaluation of Imidazo[4,5-b]pyridin-2-one-Based p38 MAP Kinase Inhibitors: Part 1.
Chemmedchem, 14, 2019
6M95
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BU of 6m95 by Molmil
Structure-based Design, Synthesis, and Biological Evaluation of Imidazo[4,5-b]pyridine-2-one based p38 MAP Kinase Inhibitors by scaffold hopping: compound 1
分子名称: (4-benzylpiperidin-1-yl)[2-methoxy-4-(methylsulfanyl)phenyl]methanone, Mitogen-activated protein kinase 14
著者Lane, W, Okada, K.
登録日2018-08-22
公開日2019-04-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure-Based Design, Synthesis, and Biological Evaluation of Imidazo[4,5-b]pyridin-2-one-Based p38 MAP Kinase Inhibitors: Part 1.
Chemmedchem, 14, 2019
6ZWI
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BU of 6zwi by Molmil
Human butyrylcholinesterase in complex with ((6-((2E,4E)-5-(benzo[d][1,3]dioxol-5-yl)penta-2,4-dienamido)hexyl)triphenylphosphonium bromide)
分子名称: (2~{E},4~{E})-5-(1,3-benzodioxol-5-yl)-~{N}-[6-(triphenyl-$l^{5}-phosphanyl)hexyl]penta-2,4-dienamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Da Silva, O, Nachon, F, Dias, J, Brazzolotto, X.
登録日2020-07-28
公開日2021-06-09
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Fine-Tuning the Biological Profile of Multitarget Mitochondriotropic Antioxidants for Neurodegenerative Diseases.
Antioxidants (Basel), 10, 2021
6ZWE
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BU of 6zwe by Molmil
Crystal structure of human acetylcholinesterase in complex with ((6-((2E,4E)-5-(benzo[d][1,3]dioxol-5-yl)penta-2,4-dienamido)hexyl)triphenylphosphonium bromide)
分子名称: (2~{E},4~{E})-5-(1,3-benzodioxol-5-yl)-~{N}-[6-(triphenyl-$l^{5}-phosphanyl)hexyl]penta-2,4-dienamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Da Silva, O, Dias, J, Nachon, F, Brazzolotto, X.
登録日2020-07-28
公開日2021-06-09
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Fine-Tuning the Biological Profile of Multitarget Mitochondriotropic Antioxidants for Neurodegenerative Diseases.
Antioxidants (Basel), 10, 2021
8CPE
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BU of 8cpe by Molmil
CryoEM structure of AL55 amyloid fibrils extracted from the kidney of an AL amyloidosis patient.
分子名称: Immunoglobulin lambda light chain
著者Puri, S, Schulte, T, Chaves-Sanjuan, A, Ricagno, S.
登録日2023-03-02
公開日2023-08-16
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献The Cryo-EM STRUCTURE of Renal Amyloid Fibril Suggests Structurally Homogeneous Multiorgan Aggregation in AL Amyloidosis.
J.Mol.Biol., 435, 2023
1WQV
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BU of 1wqv by Molmil
Human Factor Viia-Tissue Factor Complexed with propylsulfonamide-D-Thr-Met-p-aminobenzamidine
分子名称: CALCIUM ION, Coagulation factor VII, N-[DIHYDROXY(PROPYL)-LAMBDA~4~-SULFANYL]THREONYL-N~1~-{4-[AMINO(IMINO)METHYL]BENZYL}METHIONINAMIDE, ...
著者Kadono, S, Sakamoto, A, Kikuchi, Y, Oh-eda, M, Yabuta, N, Koga, T, Hattori, K, Shiraishi, T, Haramura, M, Kodama, H.
登録日2004-10-02
公開日2005-10-02
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of human factor VIIa/tissue factor in complex with peptide mimetic inhibitor
Biochem.Biophys.Res.Commun., 324, 2004
6M30
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BU of 6m30 by Molmil
Crystal structure of a mutant Staphylococcus equorum manganese superoxide dismutase N73F
分子名称: MANGANESE (II) ION, Superoxide dismutase
著者Retnoningrum, D.S, Yoshida, H, Razani, M.D, Meidianto, V.F, Hartanto, A, Artarini, A, Ismaya, W.T.
登録日2020-03-02
公開日2021-02-10
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Unprecedented Role of The N73-F124 Pair in The Staphylococcus equorum MnSOD Activity.
Curr Enzym Inhib, 2021
2JSP
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BU of 2jsp by Molmil
The prokaryotic Cys2His2 zinc finger adopts a novel fold as revealed by the NMR structure of A. tumefaciens Ros DNA binding domain
分子名称: Transcriptional regulatory protein ros
著者Malgieri, G.
登録日2007-07-10
公開日2007-10-16
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献The prokaryotic Cys2His2 zinc-finger adopts a novel fold as revealed by the NMR structure of Agrobacterium tumefaciens Ros DNA-binding domain.
Proc.Natl.Acad.Sci.Usa, 104, 2007
2M3Z
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BU of 2m3z by Molmil
NMR solution structure of HIV-1 nucleocapsid protein in complex with an inhibitor displaying a 2 inhibitors:1 NC stoichiometry
分子名称: (3E)-3-{(2Z)-[(5Z)-5-(furan-2-ylmethylidene)-4-oxo-1,3-thiazolidin-2-ylidene]hydrazinylidene}-2-oxo-2,3-dihydro-1H-indole-5-sulfonic acid, NUCLEOCAPSID PROTEIN P7, ZINC ION
著者Goudreau, N, Hucke, O.
登録日2013-01-28
公開日2013-02-27
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Discovery and Structural Characterization of a New Inhibitor Series of HIV-1 Nucleocapsid Function: NMR Solution Structure Determination of a Ternary Complex Involving a 2:1 Inhibitor/NC Stoichiometry.
J.Mol.Biol., 425, 2013
4Y1H
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BU of 4y1h by Molmil
Crystal structure of K33 linked tri-Ubiquitin
分子名称: 1,2-ETHANEDIOL, Ubiquitin-40S ribosomal protein S27a
著者Kristariyanto, Y.A, Abdul Rehman, S.A, Choi, S.Y, Ritorto, S, Campbell, D.G, Morrice, N.A, Toth, R, Kulathu, Y.
登録日2015-02-07
公開日2015-03-18
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Assembly and structure of Lys33-linked polyubiquitin reveals distinct conformations.
Biochem.J., 467, 2015
4XYZ
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BU of 4xyz by Molmil
Crystal structure of K33 linked di-Ubiquitin
分子名称: 1,2-ETHANEDIOL, ACETATE ION, IODIDE ION, ...
著者Kristariyanto, Y.A, Abdul Rehman, S.A, Choi, S.Y, Ritorto, S, Campbell, D.G, Morrice, N.A, Toth, R, Kulathu, Y.
登録日2015-02-03
公開日2015-03-18
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Assembly and structure of Lys33-linked polyubiquitin reveals distinct conformations.
Biochem.J., 467, 2015
5WJJ
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BU of 5wjj by Molmil
Structure-based Design, Synthesis, and Biological Evaluation of Imidazo[1,2-b]pyridazine-based p38 MAP Kinase Inhibitors
分子名称: Mitogen-activated protein kinase 14, N-{4-[2-(4-fluoro-3-methylphenyl)imidazo[1,2-b]pyridazin-3-yl]pyridin-2-yl}-2-methyl-1-oxo-1lambda~5~-pyridine-4-carboxamide
著者Snell, G.P, Okada, K, Bragstad, K, Sang, B.-C.
登録日2017-07-23
公開日2018-01-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure-based design, synthesis, and biological evaluation of imidazo[1,2-b]pyridazine-based p38 MAP kinase inhibitors.
Bioorg. Med. Chem., 26, 2018
7PNL
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BU of 7pnl by Molmil
Complex between monomolecular human telomeric G-quadruplex and a sulfonamide derivative of the natural alkaloid Berberine
分子名称: 4-[[1-[3-[(17-methoxy-5,7-dioxa-13-azoniapentacyclo[11.8.0.0^{2,10}.0^{4,8}.0^{15,20}]henicosa-1(21),2(10),3,8,13,15,17,19-octaen-16-yl)oxy]propyl]triazol-4-yl]methoxy]benzenesulfonamide, G-guadruplex DNA (23-mer), POTASSIUM ION
著者Bazzicalupi, C, Gratteri, P, Petreni, A, Nocentini, A.
登録日2021-09-07
公開日2022-09-21
最終更新日2024-07-24
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Development of a multi-targeted chemotherapeutic approach based on G-quadruplex stabilisation and carbonic anhydrase inhibition.
J Enzyme Inhib Med Chem, 39, 2024
4E91
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BU of 4e91 by Molmil
Crystal Structure of the N-Terminal Domain of HIV-1 Capsid in Complex With Inhibitor BD3
分子名称: (3S)-1-ethyl-3-[3-hydroxy-5-(pyridin-3-yl)phenyl]-5-phenyl-7-(trifluoromethyl)-1H-1,5-benzodiazepine-2,4(3H,5H)-dione, 4-{2-[5-(3-chlorophenyl)-1H-pyrazol-4-yl]-1-[3-(1H-imidazol-1-yl)propyl]-1H-benzimidazol-5-yl}benzoic acid, Gag protein, ...
著者Lemke, C.T.
登録日2012-03-20
公開日2012-04-25
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Distinct Effects of Two HIV-1 Capsid Assembly Inhibitor Families That Bind the Same Site within the N-Terminal Domain of the Viral CA Protein.
J.Virol., 86, 2012
4E92
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BU of 4e92 by Molmil
Crystal Structure of the N-Terminal Domain of HIV-1 Capsid in Complex With Inhibitor BM4
分子名称: 3-{5-[3-ethyl-5-(5-methylfuran-2-yl)-1H-pyrazol-1-yl]-1-[(6-oxo-1,6-dihydropyridin-3-yl)methyl]-1H-benzimidazol-2-yl}-4-hydroxybenzoic acid, 4-{2-[5-(3-chlorophenyl)-1H-pyrazol-4-yl]-1-[3-(1H-imidazol-1-yl)propyl]-1H-benzimidazol-5-yl}benzoic acid, Gag protein
著者Lemke, C.T.
登録日2012-03-20
公開日2012-04-25
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Distinct Effects of Two HIV-1 Capsid Assembly Inhibitor Families That Bind the Same Site within the N-Terminal Domain of the Viral CA Protein.
J.Virol., 86, 2012
8P89
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BU of 8p89 by Molmil
X-ray structure of cardiotoxic light chain H3 in complex to neutralizing nanobody B5
分子名称: CHLORIDE ION, Light chain H3, Nanobody B5
著者Broggini, L, Ricagno, S.
登録日2023-05-31
公開日2024-01-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (3.187 Å)
主引用文献Nanobodies counteract the toxicity of an amyloidogenic light chain by stabilizing a partially open dimeric conformation.
J.Mol.Biol., 435, 2023
8P88
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BU of 8p88 by Molmil
X-ray structure of cardiotoxic light chain H3 in complex to neutralizing nanobody C4
分子名称: CHLORIDE ION, Light Chain H3, Nanobody C4, ...
著者Broggini, L, Ricagno, S.
登録日2023-05-31
公開日2024-01-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.022 Å)
主引用文献Nanobodies counteract the toxicity of an amyloidogenic light chain by stabilizing a partially open dimeric conformation.
J.Mol.Biol., 435, 2023
2D5K
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BU of 2d5k by Molmil
Crystal structure of Dps from Staphylococcus aureus
分子名称: Dps family protein, GLYCEROL
著者Tanaka, Y, Yao, M, Watanabe, N, Tanaka, I.
登録日2005-11-02
公開日2006-10-17
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Nucleoid compaction by MrgA(Asp56Ala/Glu60Ala) does not contribute to staphylococcal cell survival against oxidative stress and phagocytic killing by macrophages
FEMS Microbiol. Lett., 360, 2014
6ANL
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BU of 6anl by Molmil
Structure-based Design, Synthesis, and Biological Evaluation of Imidazo[1,2-b]pyridazine-based p38 MAP Kinase Inhibitors
分子名称: Mitogen-activated protein kinase 14, TAK-715
著者Snell, G.P, Okada, K, Bragstad, K, Sang, B.-C.
登録日2017-08-14
公開日2018-01-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure-based design, synthesis, and biological evaluation of imidazo[1,2-b]pyridazine-based p38 MAP kinase inhibitors.
Bioorg. Med. Chem., 26, 2018
4TL7
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BU of 4tl7 by Molmil
Crystal structure of N-terminal C1 domain of KaiC
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, Circadian clock protein kinase KaiC, ...
著者Abe, J, Hiyama, T.B, Mukaiyama, A, Son, S, Akiyama, S.
登録日2014-05-29
公開日2015-07-01
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.936 Å)
主引用文献Circadian rhythms. Atomic-scale origins of slowness in the cyanobacterial circadian clock.
Science, 349, 2015
4TLC
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BU of 4tlc by Molmil
Crystal structure of N-terminal C1 domain of KaiC
分子名称: CHLORIDE ION, Circadian clock protein kinase KaiC, MAGNESIUM ION, ...
著者Abe, J, Hiyama, T.B, Mukaiyama, A, Son, S, Akiyama, S.
登録日2014-05-29
公開日2015-07-01
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Atomic-scale origins of slowness in the cyanobacterial circadian clock
Science, 349, 2015
4TLA
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BU of 4tla by Molmil
Crystal structure of N-terminal C1 domain of KaiC
分子名称: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, Circadian clock protein kinase KaiC, ...
著者Abe, J, Hiyama, T.B, Mukaiyama, A, Son, S, Akiyama, S.
登録日2014-05-29
公開日2015-07-01
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Circadian rhythms. Atomic-scale origins of slowness in the cyanobacterial circadian clock.
Science, 349, 2015
4TLB
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BU of 4tlb by Molmil
Crystal structure of N-terminal C1 domain of KaiC
分子名称: CHLORIDE ION, Circadian clock protein kinase KaiC, MAGNESIUM ION, ...
著者Abe, J, Hiyama, T.B, Mukaiyama, A, Son, S, Akiyama, S.
登録日2014-05-29
公開日2015-07-01
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.983 Å)
主引用文献Circadian rhythms. Atomic-scale origins of slowness in the cyanobacterial circadian clock.
Science, 349, 2015
6J6Y
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BU of 6j6y by Molmil
FGFR4 D2 - Fab complex
分子名称: Fab Heavy chain, Fab light chain, Fibroblast growth factor receptor 4
著者Takahashi, M, Hanzawa, H.
登録日2019-01-16
公開日2019-08-07
最終更新日2019-10-16
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Preclinical Development of U3-1784, a Novel FGFR4 Antibody Against Cancer, and Avoidance of Its On-target Toxicity.
Mol.Cancer Ther., 18, 2019
4TL9
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BU of 4tl9 by Molmil
Crystal structure of N-terminal C1 domain of KaiC
分子名称: CHLORIDE ION, Circadian clock protein kinase KaiC, MAGNESIUM ION, ...
著者Abe, J, Hiyama, T.B, Mukaiyama, A, Son, S, Akiyama, S.
登録日2014-05-29
公開日2015-07-01
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.822 Å)
主引用文献Circadian rhythms. Atomic-scale origins of slowness in the cyanobacterial circadian clock.
Science, 349, 2015

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