Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8C8P
DownloadVisualize
BU of 8c8p by Molmil
Structure of the SARS-CoV-2 spike glycoprotein in complex with the 10D12 heavy-chain-only antibody (local refinement)
Descriptor: Heavy-chain-only antibody 10D12, Spike glycoprotein,SARS-CoV-2 spike glycoprotein
Authors:Serna Martin, I, Hurdiss, D.L.
Deposit date:2023-01-20
Release date:2023-02-22
Last modified:2023-03-22
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Avidity engineering of human heavy-chain-only antibodies mitigates neutralization resistance of SARS-CoV-2 variants.
Front Immunol, 14, 2023
8Q5B
DownloadVisualize
BU of 8q5b by Molmil
Characterization of the zinc finger u-protein HVO_0758 from Haloferax volcanii: biological roles, zinc binding, and NMR solution structure
Descriptor: Small CPxCG-related zinc finger protein
Authors:Pyper, D.J, Schwalbe, H.
Deposit date:2023-08-08
Release date:2023-12-27
Method:SOLUTION NMR
Cite:Characterization of the zinc finger mu-protein HVO_0758 from Haloferax volcanii : biological roles, zinc binding, and NMR solution structure.
Front Microbiol, 14, 2023
6EEC
DownloadVisualize
BU of 6eec by Molmil
Mycobacterium tuberculosis RNAP promoter unwinding intermediate complex with RbpA/CarD and AP3 promoter captured by Corallopyronin
Descriptor: DNA (63-MER), DNA (65-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Darst, S.A, Campbell, E.A, Boyaci Selcuk, H, Chen, J.
Deposit date:2018-08-13
Release date:2018-11-21
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.55 Å)
Cite:Structures of an RNA polymerase promoter melting intermediate elucidate DNA unwinding.
Nature, 565, 2019
6EDT
DownloadVisualize
BU of 6edt by Molmil
Mycobacterium tuberculosis RNAP open promoter complex with RbpA/CarD and AP3 promoter
Descriptor: DNA (65-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Darst, S.A, Campbell, E.A, Boyaci Selcuk, H, Chen, J.
Deposit date:2018-08-10
Release date:2018-11-21
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY
Cite:Structures of an RNA polymerase promoter melting intermediate elucidate DNA unwinding.
Nature, 565, 2019
9F1T
DownloadVisualize
BU of 9f1t by Molmil
Psychrophilic laccase (multicopper oxidase) from Oenococcus oeni 229 without Histag
Descriptor: COPPER (II) ION, Multicopper oxidase
Authors:Paredes, F, Casino, P.
Deposit date:2024-04-20
Release date:2024-08-07
Last modified:2024-08-21
Method:X-RAY DIFFRACTION (3 Å)
Cite:Biochemical and Structural Characterization of a Novel Psychrophilic Laccase (Multicopper Oxidase) Discovered from Oenococcus oeni 229 (ENOLAB 4002).
Int J Mol Sci, 25, 2024
9F3Z
DownloadVisualize
BU of 9f3z by Molmil
Psychrophilic laccase (multicopper oxidase) from Oenococcus oeni 229 with Histag
Descriptor: COPPER (II) ION, Multicopper oxidase
Authors:Paredes, F, Casino, P.
Deposit date:2024-04-26
Release date:2024-08-07
Last modified:2024-08-21
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Biochemical and Structural Characterization of a Novel Psychrophilic Laccase (Multicopper Oxidase) Discovered from Oenococcus oeni 229 (ENOLAB 4002).
Int J Mol Sci, 25, 2024
4WAS
DownloadVisualize
BU of 4was by Molmil
STRUCTURE OF THE ETR1P/NADP/CROTONYL-COA COMPLEX
Descriptor: CROTONYL COENZYME A, Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1, ...
Authors:Quade, N, Voegeli, B, Rosenthal, R, Capitani, G, Erb, T.J.
Deposit date:2014-08-31
Release date:2015-03-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The use of ene adducts to study and engineer enoyl-thioester reductases.
Nat.Chem.Biol., 11, 2015
7NVJ
DownloadVisualize
BU of 7nvj by Molmil
Crystal structure of UFC1 Y110A & F121A
Descriptor: GLYCEROL, Ubiquitin-fold modifier-conjugating enzyme 1
Authors:Manoj Kumar, P, Padala, P, Isupov, M.N, Wiener, R.
Deposit date:2021-03-15
Release date:2021-09-29
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for UFM1 transfer from UBA5 to UFC1.
Nat Commun, 12, 2021
7NVK
DownloadVisualize
BU of 7nvk by Molmil
Crystal structure of UBA5 fragment fused to the N-terminus of UFC1
Descriptor: Ubiquitin-like modifier-activating enzyme 5,Ubiquitin-fold modifier-conjugating enzyme 1
Authors:Manoj Kumar, P, Padala, P, Isupov, M.N, Wiener, R.
Deposit date:2021-03-15
Release date:2021-09-29
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.651 Å)
Cite:Structural basis for UFM1 transfer from UBA5 to UFC1.
Nat Commun, 12, 2021
7NW1
DownloadVisualize
BU of 7nw1 by Molmil
Crystal structure of UFC1 in complex with UBA5
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Manoj Kumar, P, Padala, P, Isupov, M.N, Wiener, R.
Deposit date:2021-03-16
Release date:2021-09-29
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural basis for UFM1 transfer from UBA5 to UFC1.
Nat Commun, 12, 2021
7NUR
DownloadVisualize
BU of 7nur by Molmil
Structure of the Toxoplasma gondii kinase Ron13, kinase-dead mutant
Descriptor: Protein kinase domain-containing protein
Authors:Korkhov, V.M, Mehta, V.
Deposit date:2021-03-13
Release date:2021-05-26
Last modified:2021-07-07
Method:ELECTRON MICROSCOPY (3.125 Å)
Cite:Structural insights into an atypical secretory pathway kinase crucial for Toxoplasma gondii invasion.
Nat Commun, 12, 2021
8OO2
DownloadVisualize
BU of 8oo2 by Molmil
ChdA complex with amido-chelocardin
Descriptor: 2-carboxamido-2-deacetyl-chelocardin, MAGNESIUM ION, Putative transcriptional regulator
Authors:Koehnke, J, Sikandar, A.
Deposit date:2023-04-04
Release date:2023-08-02
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Revision of the Absolute Configurations of Chelocardin and Amidochelocardin.
Angew.Chem.Int.Ed.Engl., 62, 2023
5C37
DownloadVisualize
BU of 5c37 by Molmil
Structure of the beta-ketoacyl reductase domain of human fatty acid synthase bound to a spiro-imidazolone inhibitor
Descriptor: 6-{[(3R)-1-(cyclopropylcarbonyl)pyrrolidin-3-yl]methyl}-5-[4-(1-methyl-1H-indazol-5-yl)phenyl]-4,6-diazaspiro[2.4]hept-4-en-7-one, CHLORIDE ION, Fatty acid synthase, ...
Authors:Schubert, C, Milligan, C.M, Vo, K, Grasberger, B.
Deposit date:2015-06-17
Release date:2016-06-22
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Design and synthesis of a series of bioavailable fatty acid synthase (FASN) KR domain inhibitors for cancer therapy.
Bioorg.Med.Chem.Lett., 28, 2018
6ZTD
DownloadVisualize
BU of 6ztd by Molmil
Crystal structure of the BCR Fab fragment from subset #169 case P6540
Descriptor: Heavy chain of the Fab fragment from BCR derived from the P6540 CLL clone, Light chain of the Fab fragment from BCR derived from the P6540 CLL clone
Authors:Carriles, A.A, Minici, C, Degano, M.
Deposit date:2020-07-18
Release date:2021-05-26
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.43 Å)
Cite:Higher-order immunoglobulin repertoire restrictions in CLL: the illustrative case of stereotyped subsets 2 and 169.
Blood, 137, 2021
8BM0
DownloadVisualize
BU of 8bm0 by Molmil
Structure of GroEL:GroES-ATP complex plunge frozen 200 ms after reaction initiation
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Chaperonin GroEL, Co-chaperonin GroES, ...
Authors:Dhurandhar, M, Torino, S, Efremov, R.
Deposit date:2022-11-10
Release date:2023-08-09
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Time-resolved cryo-EM using a combination of droplet microfluidics with on-demand jetting.
Nat.Methods, 20, 2023
5LVY
DownloadVisualize
BU of 5lvy by Molmil
Structural studies of the Aggregative Adherence Fimbriae of Enteroaggregative Escherichia coli
Descriptor: Adhesin protein
Authors:Liu, B, Matthews, S.
Deposit date:2016-09-14
Release date:2017-07-26
Last modified:2017-08-02
Method:SOLUTION NMR
Cite:Structural and functional studies of Escherichia coli aggregative adherence fimbriae (AAF/V) reveal a deficiency in extracellular matrix binding.
Biochim. Biophys. Acta, 1865, 2017
6OBD
DownloadVisualize
BU of 6obd by Molmil
Crystal structure of anti-GLD52 Fab complex with human GLD52 peptide mimetic
Descriptor: GLD52 peptide mimetic, PHOSPHORIC ACID MONO-(2-AMINO-ETHYL) ESTER, ZINC ION, ...
Authors:Wei, R.
Deposit date:2019-03-20
Release date:2019-07-03
Last modified:2019-09-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Engineering an anti-CD52 antibody for enhanced deamidation stability.
Mabs, 11, 2019
7NDX
DownloadVisualize
BU of 7ndx by Molmil
Crystal structure of the human HSP40 DNAJB1-CTDs in complex with a peptide of NudC
Descriptor: 1,2-ETHANEDIOL, DnaJ homolog subfamily B member 1, Nuclear migration protein nudC
Authors:Delhommel, F, Zak, K.M, Popowicz, G.M, Sattler, M.
Deposit date:2021-02-02
Release date:2022-01-19
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.541 Å)
Cite:NudC guides client transfer between the Hsp40/70 and Hsp90 chaperone systems.
Mol.Cell, 82, 2022
7KMY
DownloadVisualize
BU of 7kmy by Molmil
Structure of Mtb Lpd bound to 010705
Descriptor: Dihydrolipoyl dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Lima, C.D.
Deposit date:2020-11-03
Release date:2021-01-27
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Whole Cell Active Inhibitors of Mycobacterial Lipoamide Dehydrogenase Afford Selectivity over the Human Enzyme through Tight Binding Interactions.
Acs Infect Dis., 7, 2021
6MWR
DownloadVisualize
BU of 6mwr by Molmil
Recognition of MHC-like molecule
Descriptor: 1-deoxy-1-({2,6-dioxo-5-[(E)-propylideneamino]-1,2,3,6-tetrahydropyrimidin-4-yl}amino)-D-ribitol, 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-2-microglobulin, ...
Authors:Le Nours, J, Rossjohn, J.
Deposit date:2018-10-30
Release date:2019-12-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:A class of gamma delta T cell receptors recognize the underside of the antigen-presenting molecule MR1.
Science, 366, 2019
3S2R
DownloadVisualize
BU of 3s2r by Molmil
ATChloroNEET (H87C mutant)
Descriptor: AT5g51720/MIO24_14, FE2/S2 (INORGANIC) CLUSTER
Authors:livnah, O, Eisenberg-Domovich, Y, nechushtai, R.
Deposit date:2011-05-17
Release date:2012-05-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:Arabidopsis thaliana ChloroNEET, a Member of the New NEET Family of Human Proteins, is Involved in Development, Senescence and Iron Metabolism.
To be Published
3S2Q
DownloadVisualize
BU of 3s2q by Molmil
The crystal structure of AT5g51720 (AT-NEET)
Descriptor: AT5g51720/MIO24_14, FE2/S2 (INORGANIC) CLUSTER, ZINC ION
Authors:Livnah, O, Eisenberg-Domovich, Y, Nechushtai, R.
Deposit date:2011-05-17
Release date:2012-05-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Arabidopsis thaliana ChloroNEET, a Member of the New NEET Family of Human Proteins, is Involved in Development, Senescence and Iron Metabolism.
To be Published
6UF2
DownloadVisualize
BU of 6uf2 by Molmil
NMR structure of biofilm-related Se0862 from Synechococcus elongatus
Descriptor: Biofilm-related protein
Authors:Zhang, N, LiWang, A.L.
Deposit date:2019-09-23
Release date:2020-09-30
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution NMR structure of Se0862, a highly conserved cyanobacterial protein involved in biofilm formation.
Protein Sci., 29, 2020
6MCY
DownloadVisualize
BU of 6mcy by Molmil
Crystal structure of mouse Bak
Descriptor: 1,2-ETHANEDIOL, Bcl-2 homologous antagonist/killer, FORMIC ACID
Authors:Brouwer, J.M, Czabotar, P.E, Colman, P.M.
Deposit date:2018-09-03
Release date:2019-09-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.748 Å)
Cite:A small molecule interacts with VDAC2 to block mouse BAK-driven apoptosis.
Nat.Chem.Biol., 15, 2019
6FII
DownloadVisualize
BU of 6fii by Molmil
Tubulin-Spongistatin complex
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, DIMETHYL SULFOXIDE, ...
Authors:Menchon, G, Prota, A.E, Lucena Angell, D, Bucher, P, Mueller, R, Paterson, I, Diaz, J.F, Altmann, K.-H, Steinmetz, M.O.
Deposit date:2018-01-18
Release date:2018-05-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.405 Å)
Cite:A fluorescence anisotropy assay to discover and characterize ligands targeting the maytansine site of tubulin.
Nat Commun, 9, 2018

224201

PDB entries from 2024-08-28

PDB statisticsPDBj update infoContact PDBjnumon