Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4EZH
DownloadVisualize
BU of 4ezh by Molmil
the crystal structure of KDM6B bound with H3K27me3 peptide
Descriptor: Lysine-specific demethylase 6B, N-OXALYLGLYCINE, NICKEL (II) ION, ...
Authors:Cheng, Z.J, Patel, D.J.
Deposit date:2012-05-02
Release date:2012-08-08
Last modified:2017-08-09
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:A selective jumonji H3K27 demethylase inhibitor modulates the proinflammatory macrophage response.
Nature, 488, 2012
4EZ4
DownloadVisualize
BU of 4ez4 by Molmil
free KDM6B structure
Descriptor: Lysine-specific demethylase 6B, N-OXALYLGLYCINE, NICKEL (II) ION, ...
Authors:Cheng, Z.J, Patel, D.J.
Deposit date:2012-05-02
Release date:2012-08-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:A selective jumonji H3K27 demethylase inhibitor modulates the proinflammatory macrophage response.
Nature, 488, 2012
4EYU
DownloadVisualize
BU of 4eyu by Molmil
The free structure of the mouse C-terminal domain of KDM6B
Descriptor: Lysine-specific demethylase 6B, N-OXALYLGLYCINE, NICKEL (II) ION, ...
Authors:Cheng, Z.J, Patel, D.J.
Deposit date:2012-05-01
Release date:2012-08-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A selective jumonji H3K27 demethylase inhibitor modulates the proinflammatory macrophage response.
Nature, 488, 2012
8JTM
DownloadVisualize
BU of 8jtm by Molmil
CNE55.664 trimer in complex with broadly neutralizing HIV antibody PGT145
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, PGT145 antibody fragment, ...
Authors:Chatterjee, A, Chen, C, Lee, K, Mangala Prasad, V.
Deposit date:2023-06-22
Release date:2023-10-25
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (5.14 Å)
Cite:An HIV-1 broadly neutralizing antibody overcomes structural and dynamic variation through highly focused epitope targeting.
Npj Viruses, 1, 2023
8JTD
DownloadVisualize
BU of 8jtd by Molmil
BJOX2000.664 trimer in complex with Fab fragment of broadly neutralizing HIV antibody PGT145
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, PGT145 antibody fragment, ...
Authors:Chatterjee, A, Chen, C, Lee, K, Mangala Prasad, V.
Deposit date:2023-06-21
Release date:2023-10-25
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (4.9 Å)
Cite:An HIV-1 broadly neutralizing antibody overcomes structural and dynamic variation through highly focused epitope targeting.
Npj Viruses, 1, 2023
4MMN
DownloadVisualize
BU of 4mmn by Molmil
Structural and biochemical analysis of type II free methionine-R-sulfoxide reductase from Thermoplasma acidophilum
Descriptor: Putative uncharacterized protein Ta0848
Authors:Kim, H.S, Kwak, G.H, Lee, K.T, Jo, C.H, Hwang, K.Y, Kim, H.Y.
Deposit date:2013-09-09
Release date:2014-08-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural and biochemical analysis of a type II free methionine-R-sulfoxide reductase from Thermoplasma acidophilum
Arch.Biochem.Biophys., 560, 2014
4MN7
DownloadVisualize
BU of 4mn7 by Molmil
Structural and biochemical analysis of type II free methionine-R-sulfoxide reductase from Thermoplasma acidophilum
Descriptor: METHIONINE SULFOXIDE, Putative uncharacterized protein Ta0848
Authors:Kim, H.S, Kwak, G.H, Lee, K.T, Jo, C.H, Hwang, K.Y, Kim, H.Y.
Deposit date:2013-09-10
Release date:2014-08-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and biochemical analysis of a type II free methionine-R-sulfoxide reductase from Thermoplasma acidophilum
Arch.Biochem.Biophys., 560, 2014
4GQZ
DownloadVisualize
BU of 4gqz by Molmil
Crystal Structure of S.CueP
Descriptor: CHLORIDE ION, Putative periplasmic or exported protein
Authors:Ha, N.C, Yoon, B.Y.
Deposit date:2012-08-24
Release date:2013-08-14
Last modified:2013-10-23
Method:X-RAY DIFFRACTION (1.799 Å)
Cite:Structure of the periplasmic copper-binding protein CueP from Salmonella enterica serovar Typhimurium
Acta Crystallogr.,Sect.D, 69, 2013
7XHY
DownloadVisualize
BU of 7xhy by Molmil
Crystal structure of MerTK Kinase domain with BMS794833
Descriptor: CHLORIDE ION, DIMETHYL SULFOXIDE, Tyrosine-protein kinase Mer, ...
Authors:Kim, J.H, Lee, B.I.
Deposit date:2022-04-11
Release date:2022-11-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:BMS794833 inhibits macrophage efferocytosis by directly binding to MERTK and inhibiting its activity.
Exp.Mol.Med., 54, 2022
6PTS
DownloadVisualize
BU of 6pts by Molmil
NMR data-driven model of KRas-GMPPNP:RBD-CRD complex tethered to a nanodisc (state A)
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Apolipoprotein A-I, GTPase KRas, ...
Authors:Fang, Z, Lee, K, Gasmi-Seabrook, G, Ikura, M, Marshall, C.B.
Deposit date:2019-07-16
Release date:2020-05-13
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Multivalent assembly of KRAS with the RAS-binding and cysteine-rich domains of CRAF on the membrane.
Proc.Natl.Acad.Sci.USA, 117, 2020
6PTW
DownloadVisualize
BU of 6ptw by Molmil
NMR data-driven model of KRas-GMPPNP:RBD-CRD complex tethered to a nanodisc (state B)
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Apolipoprotein A-I, GTPase KRas, ...
Authors:Fang, Z, Lee, K, Gasmi-Seabrook, G, Ikura, M, Marshall, C.B.
Deposit date:2019-07-16
Release date:2020-05-13
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Multivalent assembly of KRAS with the RAS-binding and cysteine-rich domains of CRAF on the membrane.
Proc.Natl.Acad.Sci.USA, 117, 2020
3M6C
DownloadVisualize
BU of 3m6c by Molmil
Crystal structure of Mycobacterium tuberculosis GroEL1 apical domain
Descriptor: 60 kDa chaperonin 1
Authors:Tsai, F.T.F, Sielaff, B, Lee, K.
Deposit date:2010-03-15
Release date:2010-12-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and functional conservation of Mycobacterium tuberculosis GroEL paralogs suggests that GroEL1 Is a chaperonin.
J.Mol.Biol., 405, 2011
2K6P
DownloadVisualize
BU of 2k6p by Molmil
Solution Structure of hypothetical protein, HP1423
Descriptor: Uncharacterized protein HP_1423
Authors:Kim, J, Park, S, Lee, K, Son, W, Sohn, N, Lee, B.
Deposit date:2008-07-15
Release date:2009-06-16
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of hypothetical protein HP1423 (Y1423_HELPY) reveals the presence of alphaL motif related to RNA binding
Proteins, 75, 2009
4DK1
DownloadVisualize
BU of 4dk1 by Molmil
Crystal Structure of MacA-MexA chimeric protein, containing the Pseudomonas aeruginosa MexA alpha-hairpin domain.
Descriptor: Putative MacA, Multidrug resistance protein mexA
Authors:Xu, Y, Ha, N.C.
Deposit date:2012-02-03
Release date:2012-03-07
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (3.499 Å)
Cite:Assembly and channel opening of outer membrane protein in tripartite drug efflux pumps of Gram-negative bacteria.
J.Biol.Chem., 287, 2012
4YJ4
DownloadVisualize
BU of 4yj4 by Molmil
Crystal structure of Bcl-xL in complex with the BIM BH3 domain containing Ile155-to-Arg and Glu158-to-phosphoserine mutations
Descriptor: ACETATE ION, Bcl-2-like protein 1, BIM BH3 domain, ...
Authors:Ku, B, Ha, N.-C, Oh, B.-H.
Deposit date:2015-03-03
Release date:2015-07-29
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Conversion of cell-survival activity of Akt into apoptotic death of cancer cells by two mutations on the BIM BH3 domain.
Cell Death Dis, 6, 2015
4C0P
DownloadVisualize
BU of 4c0p by Molmil
Unliganded Transportin 3
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, TRANSPORTIN-3
Authors:Maertens, G.N, Cook, N.J, Hare, S, Cherepanov, P.
Deposit date:2013-08-06
Release date:2014-01-22
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structural Basis for Nuclear Import of Splicing Factors by Human Transportin 3.
Proc.Natl.Acad.Sci.USA, 111, 2014
4C0O
DownloadVisualize
BU of 4c0o by Molmil
Transportin 3 in complex with phosphorylated ASF/SF2
Descriptor: POTASSIUM ION, SERINE/ARGININE-RICH SPLICING FACTOR 1, TRANSPORTIN-3
Authors:Maertens, G.N, Cook, N.J, Cherepanov, P.
Deposit date:2013-08-06
Release date:2014-01-22
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.557 Å)
Cite:Structural Basis for Nuclear Import of Splicing Factors by Human Transportin 3.
Proc.Natl.Acad.Sci.USA, 111, 2014
8F86
DownloadVisualize
BU of 8f86 by Molmil
SIRT6 bound to an H3K9Ac nucleosome
Descriptor: DNA (148-MER), Histone H2A type 1, Histone H2B, ...
Authors:Markert, J, Whedon, S, Wang, Z, Cole, P, Farnung, L.
Deposit date:2022-11-21
Release date:2023-04-05
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural Basis of Sirtuin 6-Catalyzed Nucleosome Deacetylation.
J.Am.Chem.Soc., 145, 2023
4DK0
DownloadVisualize
BU of 4dk0 by Molmil
Crystal structure of MacA from Actinobacillus actinomycetemcomitans
Descriptor: Putative MacA
Authors:Xu, Y, Piao, S, Ha, N.C.
Deposit date:2012-02-03
Release date:2012-03-07
Last modified:2015-12-09
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Assembly and channel opening of outer membrane protein in tripartite drug efflux pumps of Gram-negative bacteria.
J.Biol.Chem., 287, 2012
4Z85
DownloadVisualize
BU of 4z85 by Molmil
Crystal structur of Pseudomonas fluorescens 2-nitrobenzoate 2-nitroreductase NbaA
Descriptor: 2-nitrobenzoate nitroreductase
Authors:Ha, N.C, Jiao, L, Kim, J.S.
Deposit date:2015-04-08
Release date:2016-01-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and Mechanistic Insights into the Pseudomonas fluorescens 2-Nitrobenzoate 2-Nitroreductase NbaA
Appl.Environ.Microbiol., 81, 2015
4C0Q
DownloadVisualize
BU of 4c0q by Molmil
Transportin 3 in complex with Ran(Q69L)GTP
Descriptor: GTP-BINDING NUCLEAR PROTEIN RAN, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Maertens, G, Hare, S, Cherepanov, P.
Deposit date:2013-08-06
Release date:2014-01-22
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.42 Å)
Cite:Structural Basis for Nuclear Import of Splicing Factors by Human Transportin 3.
Proc.Natl.Acad.Sci.USA, 111, 2014
3HPV
DownloadVisualize
BU of 3hpv by Molmil
Crystal Structure Analysis of the 2,3-dioxygenase LapB from Pseudomonas sp. KL28
Descriptor: Catechol 2,3-dioxygenase, FE (II) ION
Authors:Cho, J.-H, Rhee, S.
Deposit date:2009-06-05
Release date:2009-10-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure and functional analysis of the extradiol dioxygenase LapB from a long-chain alkylphenol degradation pathway in Pseudomonas
J.Biol.Chem., 284, 2009
3HQ0
DownloadVisualize
BU of 3hq0 by Molmil
Crystal Structure Analysis of the 2,3-dioxygenase LapB from Pseudomonas in complex with a product
Descriptor: (2E,4E)-2-hydroxy-6-oxohepta-2,4-dienoic acid, Catechol 2,3-dioxygenase, FE (III) ION
Authors:Cho, J.-H, Rhee, S.
Deposit date:2009-06-05
Release date:2009-10-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure and functional analysis of the extradiol dioxygenase LapB from a long-chain alkylphenol degradation pathway in Pseudomonas
J.Biol.Chem., 284, 2009
3HPY
DownloadVisualize
BU of 3hpy by Molmil
Crystal Structure Analysis of the 2,3-dioxygenase LapB from Pseudomonas in the complex with 4-methylcatechol
Descriptor: 4-METHYLCATECHOL, Catechol 2,3-dioxygenase, FE (III) ION
Authors:Cho, J.-H, Rhee, S.
Deposit date:2009-06-05
Release date:2009-10-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystal structure and functional analysis of the extradiol dioxygenase LapB from a long-chain alkylphenol degradation pathway in Pseudomonas
J.Biol.Chem., 284, 2009
1NDO
DownloadVisualize
BU of 1ndo by Molmil
NAPHTHALENE 1,2-DIOXYGENASE
Descriptor: FE (III) ION, FE2/S2 (INORGANIC) CLUSTER, NAPHTHALENE 1,2-DIOXYGENASE
Authors:Ramaswamy, S, Kauppi, B, Carredano, E.
Deposit date:1998-01-11
Release date:1999-03-23
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure of an aromatic-ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenase.
Structure, 6, 1998

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon