Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7DJZ
DownloadVisualize
BU of 7djz by Molmil
Crystal structure of SARS-CoV-2 Spike RBD in complex with MW01 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CITRIC ACID, MW01 heavy chain, ...
Authors:Wang, J, Jiao, S, Wang, R, Zhang, J, Zhang, M, Wang, M.
Deposit date:2020-11-22
Release date:2021-06-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.397 Å)
Cite:Antibody-dependent enhancement (ADE) of SARS-CoV-2 pseudoviral infection requires Fc gamma RIIB and virus-antibody complex with bivalent interaction.
Commun Biol, 5, 2022
7DK0
DownloadVisualize
BU of 7dk0 by Molmil
Crystal structure of SARS-CoV-2 Spike RBD in complex with MW05 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, MW05 heavy chain, MW05 light chain, ...
Authors:Wang, J, Jiao, S, Wang, R, Zhang, J, Zhang, M, Wang, M.
Deposit date:2020-11-22
Release date:2021-06-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.199 Å)
Cite:Antibody-dependent enhancement (ADE) of SARS-CoV-2 pseudoviral infection requires Fc gamma RIIB and virus-antibody complex with bivalent interaction.
Commun Biol, 5, 2022
8G05
DownloadVisualize
BU of 8g05 by Molmil
Cryo-EM structure of an orphan GPCR-Gi protein signaling complex
Descriptor: 6-(octylamino)pyrimidine-2,4(3H,5H)-dione, CHOLESTEROL, G-protein coupled receptor 84, ...
Authors:Zhang, X, Wang, Y.J, Li, X, Liu, G.B, Gong, W.M, Zhang, C.
Deposit date:2023-01-31
Release date:2023-11-01
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Pro-phagocytic function and structural basis of GPR84 signaling.
Nat Commun, 14, 2023
6M4J
DownloadVisualize
BU of 6m4j by Molmil
SspA in complex with cysteine
Descriptor: CYSTEINE, PYRIDOXAL-5'-PHOSPHATE, SspA complex protein
Authors:Liu, L, Gao, H.
Deposit date:2020-03-07
Release date:2020-04-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Analysis of an l-Cysteine Desulfurase from an Ssp DNA Phosphorothioation System.
Mbio, 11, 2020
6LQE
DownloadVisualize
BU of 6lqe by Molmil
Crystal structure of Arabidopsis ARID5 PHD finger in complex with H3K4me3 peptide
Descriptor: 15-mer peptide from Histone H3.2, AT-rich interactive domain-containing protein 4, ZINC ION
Authors:Liu, R, Du, J.
Deposit date:2020-01-13
Release date:2020-06-03
Last modified:2020-08-19
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Dual Recognition of H3K4me3 and DNA by the ISWI Component ARID5 Regulates the Floral Transition in Arabidopsis.
Plant Cell, 32, 2020
6LQF
DownloadVisualize
BU of 6lqf by Molmil
Crystal structure of Arabidopsis ARID5 ARID-PHD cassette in complex with H3K4me3 peptide and DNA
Descriptor: 15-mer peptide from Histone H3.2, AT-rich interactive domain-containing protein 4, DNA (5'-D(*TP*TP*TP*AP*GP*AP*TP*CP*TP*AP*AP*A)-3'), ...
Authors:Liu, R, Du, J.
Deposit date:2020-01-13
Release date:2020-06-03
Last modified:2020-08-19
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Dual Recognition of H3K4me3 and DNA by the ISWI Component ARID5 Regulates the Floral Transition in Arabidopsis.
Plant Cell, 32, 2020
8HXQ
DownloadVisualize
BU of 8hxq by Molmil
Nanobody1 in complex with human BCMA ECD
Descriptor: Nanobody1, Tumor necrosis factor receptor superfamily member 17
Authors:Sun, Y, Zhang, B.
Deposit date:2023-01-05
Release date:2024-01-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Antigen-induced chimeric antigen receptor multimerization amplifies on-tumor cytotoxicity.
Signal Transduct Target Ther, 8, 2023
8HXR
DownloadVisualize
BU of 8hxr by Molmil
Nanobody2 in complex with human BCMA ECD
Descriptor: Nanobody2, Tumor necrosis factor receptor superfamily member 17
Authors:Sun, Y, Zhang, B.
Deposit date:2023-01-05
Release date:2024-01-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Antigen-induced chimeric antigen receptor multimerization amplifies on-tumor cytotoxicity.
Signal Transduct Target Ther, 8, 2023
7ES4
DownloadVisualize
BU of 7es4 by Molmil
the crystral structure of DndH-C-domain
Descriptor: DNA phosphorothioation-dependent restriction protein DptH
Authors:Wu, D.
Deposit date:2021-05-08
Release date:2022-05-11
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The functional coupling between restriction and DNA phosphorothioate modification systems underlying the DndFGH restriction complex
Nat Catal, 2022
7EXX
DownloadVisualize
BU of 7exx by Molmil
The structure of DndG
Descriptor: DNA phosphorothioation-dependent restriction protein DptG, SODIUM ION
Authors:Wu, D, Wang, L.
Deposit date:2021-05-28
Release date:2022-06-01
Last modified:2022-12-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The functional coupling between restriction and DNA phosphorothioate modification systems underlying the DndFGH restriction complex
Nat Catal, 2022
6LB9
DownloadVisualize
BU of 6lb9 by Molmil
Magnesium ion-bound SspB crystal structure
Descriptor: DUF4007 domain-containing protein, MAGNESIUM ION
Authors:Liqiong, L, Yubing, Z.
Deposit date:2019-11-13
Release date:2020-03-25
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.227 Å)
Cite:SspABCD-SspE is a phosphorothioation-sensing bacterial defence system with broad anti-phage activities.
Nat Microbiol, 5, 2020
8JJ2
DownloadVisualize
BU of 8jj2 by Molmil
Cryo-EM structure of GluN1-2A NMDAR in complex with human Fab2G7 in one fab conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab2G7 Heavy Chain, ...
Authors:Wang, H, Zhu, S.
Deposit date:2023-05-29
Release date:2024-06-05
Last modified:2024-09-11
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structural basis for antibody-mediated NMDA receptor clustering and endocytosis in autoimmune encephalitis.
Nat.Struct.Mol.Biol., 2024
8JJ1
DownloadVisualize
BU of 8jj1 by Molmil
Cryo-EM structure of GluN1-2A NMDAR in complex with human Fab2G7 in two fab conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab 2G7 Heavy Chain, ...
Authors:Wang, H, Zhu, S.
Deposit date:2023-05-29
Release date:2024-06-05
Last modified:2024-09-11
Method:ELECTRON MICROSCOPY (3.77 Å)
Cite:Structural basis for antibody-mediated NMDA receptor clustering and endocytosis in autoimmune encephalitis.
Nat.Struct.Mol.Biol., 2024
8JIZ
DownloadVisualize
BU of 8jiz by Molmil
Cryo-EM structure of GluN1-2A NMDAR in complex with human Fab5F6 in two fab bind conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab5F6 Heavy Chain, ...
Authors:Wang, H, Zhu, S.
Deposit date:2023-05-29
Release date:2024-06-05
Last modified:2024-09-11
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural basis for antibody-mediated NMDA receptor clustering and endocytosis in autoimmune encephalitis.
Nat.Struct.Mol.Biol., 2024
8JJ0
DownloadVisualize
BU of 8jj0 by Molmil
Cryo-EM structure of GluN1-2A NMDAR in complex with human Fab5F6 in one fab bind conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab5F6 Heavy Chain, ...
Authors:Wang, H, Zhu, S.
Deposit date:2023-05-29
Release date:2024-06-05
Last modified:2024-09-11
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Structural basis for antibody-mediated NMDA receptor clustering and endocytosis in autoimmune encephalitis.
Nat.Struct.Mol.Biol., 2024
8KGK
DownloadVisualize
BU of 8kgk by Molmil
Cryo-EM structure of the GPR61-Gs complex
Descriptor: G-protein coupled receptor 61, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Nie, Y, Qiu, Z, Zheng, S.
Deposit date:2023-08-19
Release date:2023-10-11
Method:ELECTRON MICROSCOPY (3.16 Å)
Cite:Specific binding of GPR174 by endogenous lysophosphatidylserine leads to high constitutive G s signaling.
Nat Commun, 14, 2023
8KG5
DownloadVisualize
BU of 8kg5 by Molmil
Prefusion RSV F Bound to Lonafarnib and D25 Fab
Descriptor: 4-{2-[4-(3,10-DIBROMO-8-CHLORO-6,11-DIHYDRO-5H-BENZO[5,6]CYCLOHEPTA[1,2-B]PYRIDIN-11-YL)PIPERIDIN-1-YL]-2-OXOETHYL}PIPERIDINE-1-CARBOXAMIDE, D25 heavy chain, D25 light chain, ...
Authors:Yang, Q, Xue, B, Liu, F, Peng, W, Chen, X.
Deposit date:2023-08-17
Release date:2024-06-19
Method:ELECTRON MICROSCOPY (3.17 Å)
Cite:Farnesyltransferase inhibitor lonafarnib suppresses respiratory syncytial virus infection by blocking conformational change of fusion glycoprotein.
Signal Transduct Target Ther, 9, 2024
7JU7
DownloadVisualize
BU of 7ju7 by Molmil
The crystal structure of SARS-CoV-2 Main Protease in complex with masitinib
Descriptor: 3C-like proteinase, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Tan, K, Maltseva, N.I, Welk, L.F, Jedrzejczak, R.P, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2020-08-19
Release date:2020-09-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Masitinib is a broad coronavirus 3CL inhibitor that blocks replication of SARS-CoV-2.
Science, 373, 2021
8IVZ
DownloadVisualize
BU of 8ivz by Molmil
Crystal structure of talin R7 in complex with KANK1 KN motif
Descriptor: KN motif and ankyrin repeat domains 1, Talin-1
Authors:Xu, Y, Li, K, Wei, Z, Cong, Y.
Deposit date:2023-03-29
Release date:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:KANK1 shapes focal adhesions by orchestrating protein binding, mechanical force sensing, and phase separation.
Cell Rep, 42, 2023
5GUT
DownloadVisualize
BU of 5gut by Molmil
The crystal structure of mouse DNMT1 (731-1602) mutant - N1248A
Descriptor: DNA (cytosine-5)-methyltransferase 1, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION, ...
Authors:Chen, S.J, Ye, F.
Deposit date:2016-08-31
Release date:2017-09-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.099 Å)
Cite:Biochemical Studies and Molecular Dynamic Simulations Reveal the Molecular Basis of Conformational Changes in DNA Methyltransferase-1.
ACS Chem. Biol., 13, 2018
8KB0
DownloadVisualize
BU of 8kb0 by Molmil
Crystal structure of 01JD-AEAIIVAMV
Descriptor: Beta2-microglobulin, MHC class I antigen alpha chain, peptide of AIV
Authors:Tang, Z, Zhang, N.
Deposit date:2023-08-03
Release date:2024-05-29
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:The impact of micropolymorphism in Anpl-UAA on structural stability and peptide presentation.
Int.J.Biol.Macromol., 267, 2024
8KB1
DownloadVisualize
BU of 8kb1 by Molmil
Crystal structure of 11JD
Descriptor: Beta2-microglobulin, MHC class I antigen, peptide of AIV
Authors:Tang, Z, Zhang, N.
Deposit date:2023-08-03
Release date:2024-05-29
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:The impact of micropolymorphism in Anpl-UAA on structural stability and peptide presentation.
Int.J.Biol.Macromol., 267, 2024
5GUV
DownloadVisualize
BU of 5guv by Molmil
The crystal structure of mouse DNMT1 (731-1602) mutant - R1279D
Descriptor: DNA (cytosine-5)-methyltransferase 1, ZINC ION
Authors:Ye, F, Chen, S.J.
Deposit date:2016-08-31
Release date:2017-08-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.078 Å)
Cite:Biochemical Studies and Molecular Dynamic Simulations Reveal the Molecular Basis of Conformational Changes in DNA Methyltransferase-1.
ACS Chem. Biol., 13, 2018
7DTZ
DownloadVisualize
BU of 7dtz by Molmil
FGFR4 complex with a covalent inhibitor
Descriptor: Fibroblast growth factor receptor 4, N-[2-[[5-[[2,6-bis(chloranyl)-3,5-dimethoxy-phenyl]methoxy]pyrimidin-2-yl]amino]-3-methyl-phenyl]-2-fluoranyl-prop-2-enamide, SULFATE ION
Authors:Chen, X.J, Dai, S.Y, Chen, Y.H.
Deposit date:2021-01-07
Release date:2021-04-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Investigation of Covalent Warheads in the Design of 2-Aminopyrimidine-based FGFR4 Inhibitors.
Acs Med.Chem.Lett., 12, 2021
2MP0
DownloadVisualize
BU of 2mp0 by Molmil
Protein Phosphorylation upon a Fleeting Encounter
Descriptor: Glucose-specific phosphotransferase enzyme IIA component, PHOSPHITE ION, Phosphoenolpyruvate-protein phosphotransferase
Authors:Xing, Q, Yang, J, Huang, P, Zhang, W, Tang, C.
Deposit date:2014-05-08
Release date:2014-08-20
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Visualizing an ultra-weak protein-protein interaction in phosphorylation signaling.
Angew.Chem.Int.Ed.Engl., 53, 2014

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon