Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6AY2
DownloadVisualize
BU of 6ay2 by Molmil
Structure of CathB with covalently linked Compound 28
Descriptor: Cathepsin B, N~1~-[(2S)-1-amino-5-(carbamoylamino)pentan-2-yl]-N'~1~-[(1R)-1-(thiophen-3-yl)ethyl]cyclobutane-1,1-dicarboxamide
Authors:Kiefer, J.R, Steinbacher, S.
Deposit date:2017-09-07
Release date:2017-12-27
Last modified:2018-02-21
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Discovery of Peptidomimetic Antibody-Drug Conjugate Linkers with Enhanced Protease Specificity.
J. Med. Chem., 61, 2018
8X9G
DownloadVisualize
BU of 8x9g by Molmil
Crystal structure of CO dehydrogenase mutant in complex with BV
Descriptor: 1-(phenylmethyl)-4-[1-(phenylmethyl)pyridin-1-ium-4-yl]pyridin-1-ium, Carbon monoxide dehydrogenase 2, FE(4)-NI(1)-S(4) CLUSTER, ...
Authors:Lee, H.H, Heo, Y, Yoon, H.J, Kim, S.M, Kong, S.Y.
Deposit date:2023-11-30
Release date:2024-04-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Identifying a key spot for electron mediator-interaction to tailor CO dehydrogenase's affinity.
Nat Commun, 15, 2024
8X9H
DownloadVisualize
BU of 8x9h by Molmil
Crystal structure of CO dehydrogenase mutant (F41C)
Descriptor: Carbon monoxide dehydrogenase 2, FE (III) ION, FE(4)-NI(1)-S(4) CLUSTER, ...
Authors:Lee, H.H, Heo, Y, Yoon, H.J, Kim, S.M, Kong, S.Y.
Deposit date:2023-11-30
Release date:2024-04-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Identifying a key spot for electron mediator-interaction to tailor CO dehydrogenase's affinity.
Nat Commun, 15, 2024
8X9F
DownloadVisualize
BU of 8x9f by Molmil
Crystal structure of CO dehydrogenase mutant in complex with EV
Descriptor: 1,2-ETHANEDIOL, 1-ethyl-4-(1-ethylpyridin-1-ium-4-yl)pyridin-1-ium, Carbon monoxide dehydrogenase 2, ...
Authors:Lee, H.H, Heo, Y, Yoon, H.J, Kim, S.M, Kong, S.Y.
Deposit date:2023-11-30
Release date:2024-04-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Identifying a key spot for electron mediator-interaction to tailor CO dehydrogenase's affinity.
Nat Commun, 15, 2024
8X9E
DownloadVisualize
BU of 8x9e by Molmil
Crystal structure of CO dehydrogenase mutant with increased affinity for electron mediators in low PEG concentration
Descriptor: 1,2-ETHANEDIOL, Carbon monoxide dehydrogenase 2, FE (III) ION, ...
Authors:Lee, H.H, Heo, Y, Yoon, H.J, Kim, S.M, Kong, S.Y.
Deposit date:2023-11-30
Release date:2024-04-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Identifying a key spot for electron mediator-interaction to tailor CO dehydrogenase's affinity.
Nat Commun, 15, 2024
6VDV
DownloadVisualize
BU of 6vdv by Molmil
Crystal Structure of Dehaloperoxidase B in Complex with cofactor Manganese(III)- Porphyrin and Substrate 4-bromophenol
Descriptor: 1,2-ETHANEDIOL, 4-BROMOPHENOL, Dehaloperoxidase B, ...
Authors:Ghiladi, R.A, de Serrano, V.S, McGuire, A, Malewschik, T.
Deposit date:2019-12-27
Release date:2020-12-30
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Nonnative Heme Incorporation into Multifunctional Globin Increases Peroxygenase Activity an Order and Magnitude Compared to Native Enzyme
To Be Published
8X9D
DownloadVisualize
BU of 8x9d by Molmil
Crystal structure of CO dehydrogenase mutant with increased affinity for electron mediators in high PEG concentration
Descriptor: Carbon monoxide dehydrogenase 2, FE (III) ION, FE(4)-NI(1)-S(4) CLUSTER, ...
Authors:Lee, H.H, Heo, Y, Yoon, H.J, Kim, S.M, Kong, S.Y.
Deposit date:2023-11-30
Release date:2024-04-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Identifying a key spot for electron mediator-interaction to tailor CO dehydrogenase's affinity.
Nat Commun, 15, 2024
6VDU
DownloadVisualize
BU of 6vdu by Molmil
Crystal Structure of Dehaloperoxidase B in Complex with cofactor Iron(III) Deuteroporphyrin IX and Substrate Trichlorophenol
Descriptor: 1,2-ETHANEDIOL, 2,4,6-trichlorophenol, DI(HYDROXYETHYL)ETHER, ...
Authors:Ghiladi, R.A, de Serrano, V.S, McGuire, A, Malewschik, T.
Deposit date:2019-12-27
Release date:2020-12-30
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Nonnative Heme Incorporation into Multifunctional Globin Increases Peroxygenase Activity an Order and Magnitude Compared to Native Enzyme
To Be Published
6VDX
DownloadVisualize
BU of 6vdx by Molmil
Crystal Structure of Dehaloperoxidase B in Complex with cofactor Manganese(III)- Porphyrin and Substrate Trichlorophenol
Descriptor: 1,2-ETHANEDIOL, 2,4,6-trichlorophenol, DI(HYDROXYETHYL)ETHER, ...
Authors:Ghiladi, R.A, de Serrano, V.S, McGuire, A, Malewschik, T.
Deposit date:2019-12-27
Release date:2020-12-30
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Nonnative Heme Incorporation into Multifunctional Globin Increases Peroxygenase Activity an Order and Magnitude Compared to Native Enzyme
To Be Published
6VD6
DownloadVisualize
BU of 6vd6 by Molmil
Crystal Structure of Dehaloperoxidase B in Complex with cofactor Iron(III) Mesoporphyrin IX and Substrate 4-nitrophenol
Descriptor: 1,2-ETHANEDIOL, Dehaloperoxidase B, Mesoheme, ...
Authors:Ghiladi, R.A, de Serrano, V.S, Malewschik, T.
Deposit date:2019-12-23
Release date:2020-12-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.563 Å)
Cite:Nonnative Heme Incorporation into Multifunctional Globin Increases Peroxygenase Activity an Order and Magnitude Compared to Native Enzyme
To Be Published
6NW2
DownloadVisualize
BU of 6nw2 by Molmil
Structure of human RIPK1 kinase domain in complex with compound 11
Descriptor: (5R)-5-methyl-N-[(3S)-5-methyl-4-oxo-2,3,4,5-tetrahydro-1,5-benzoxazepin-3-yl]-4,5,6,7-tetrahydro-2H-indazole-3-carboxamide, Receptor-interacting serine/threonine-protein kinase 1
Authors:Fong, R, Lupardus, P.J.
Deposit date:2019-02-05
Release date:2019-05-01
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Potent and selective inhibitors of receptor-interacting protein kinase 1 that lack an aromatic back pocket group.
Bioorg.Med.Chem.Lett., 29, 2019
6WUH
DownloadVisualize
BU of 6wuh by Molmil
Mitochondrial SAM complex in lipid nanodiscs
Descriptor: Bac_surface_Ag domain-containing protein, Sam35, Tom37 domain-containing protein
Authors:Ni, X, Botos, I, Diederichs, K.
Deposit date:2020-05-04
Release date:2020-08-12
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural insight into mitochondrial beta-barrel outer membrane protein biogenesis.
Nat Commun, 11, 2020
6WUM
DownloadVisualize
BU of 6wum by Molmil
Mitochondrial SAM complex - dimer 2 in detergent
Descriptor: Bac_surface_Ag domain-containing protein, Sam35, Tom37 domain-containing protein
Authors:Ni, X, Botos, I, Diederichs, K.
Deposit date:2020-05-04
Release date:2020-08-12
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural insight into mitochondrial beta-barrel outer membrane protein biogenesis.
Nat Commun, 11, 2020
2ERF
DownloadVisualize
BU of 2erf by Molmil
Crystal Structure of the Thrombospondin-1 N-terminal Domain at 1.45A Resolution
Descriptor: Thrombospondin-1
Authors:Tan, K, Wang, J, Lawler, J.
Deposit date:2005-10-24
Release date:2006-01-17
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:The structures of the thrombospondin-1 N-terminal domain and its complex with a synthetic pentameric heparin.
Structure, 14, 2006
7C4X
DownloadVisualize
BU of 7c4x by Molmil
Crystal structure of germination protease from the spore-forming bacterium Paenisporosarcina sp. TG-20 in its inactive form
Descriptor: germination protease
Authors:Lee, J.H, Lee, C.W.
Deposit date:2020-05-18
Release date:2021-03-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into the psychrophilic germinal protease PaGPR and its autoinhibitory loop.
J.Microbiol, 58, 2020
7CHU
DownloadVisualize
BU of 7chu by Molmil
Geobacillus virus E2 - ORF18
Descriptor: Putative pectin lyase
Authors:Gong, Y.
Deposit date:2020-07-06
Release date:2021-04-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.008 Å)
Cite:Structural and functional characterization of the deep-sea thermophilic bacteriophage GVE2 tailspike protein.
Int.J.Biol.Macromol., 164, 2020
6WUT
DownloadVisualize
BU of 6wut by Molmil
Mitochondrial SAM complex - high resolution monomer in detergent
Descriptor: Bac_surface_Ag domain-containing protein, Sam35, Tom37 domain-containing protein
Authors:Ni, X, Botos, I, Diederichs, K.
Deposit date:2020-05-05
Release date:2020-08-12
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural insight into mitochondrial beta-barrel outer membrane protein biogenesis.
Nat Commun, 11, 2020
5C93
DownloadVisualize
BU of 5c93 by Molmil
Histidine kinase with ATP
Descriptor: Histidine kinase, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, SULFATE ION
Authors:Cai, Y.
Deposit date:2015-06-26
Release date:2016-07-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.518 Å)
Cite:Conformational dynamics of the essential sensor histidine kinase WalK.
Acta Crystallogr D Struct Biol, 73, 2017
7WQG
DownloadVisualize
BU of 7wqg by Molmil
Bovin Alpha-lactalbumin binding with zinc ions
Descriptor: Alpha-lactalbumin, ZINC ION
Authors:Li, T, Zhang, T.
Deposit date:2022-01-25
Release date:2022-08-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Zinc binding strength of proteins dominants zinc uptake in Caco-2 cells.
Rsc Adv, 12, 2022
5GMQ
DownloadVisualize
BU of 5gmq by Molmil
Structure of MERS-CoV RBD in complex with a fully human antibody MCA1
Descriptor: 1,2-ETHANEDIOL, MCA1 heavy chain, MCA1 light chain, ...
Authors:Chen, C, Wang, J.M, Zou, T.T, Gao, X.P, Cui, S, Jin, Q.
Deposit date:2016-07-15
Release date:2017-05-31
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.703 Å)
Cite:Human Neutralizing Monoclonal Antibody Inhibition of Middle East Respiratory Syndrome Coronavirus Replication in the Common Marmoset.
J. Infect. Dis., 215, 2017
5UJT
DownloadVisualize
BU of 5ujt by Molmil
Crystal structure of human HLA-DQ8 in complex with insulin mimotope binding in register 3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose, MHC class II HLA-DQ-beta-1, ...
Authors:Wang, Y, Dai, S.
Deposit date:2017-01-18
Release date:2017-12-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:C-terminal modification of the insulin B:11-23 peptide creates superagonists in mouse and human type 1 diabetes.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
3U9Q
DownloadVisualize
BU of 3u9q by Molmil
Ligand binding domain of PPARgamma complexed with Decanoic Acid and PGC-1a peptide
Descriptor: DECANOIC ACID, PGC-1a peptide, Peroxisome proliferator-activated receptor gamma
Authors:Malapaka, V.R, Xu, H.E.
Deposit date:2011-10-19
Release date:2011-11-09
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.522 Å)
Cite:Identification and Mechanism of 10-Carbon Fatty Acid as Modulating Ligand of Peroxisome Proliferator-activated Receptors.
J.Biol.Chem., 287, 2012
3LAL
DownloadVisualize
BU of 3lal by Molmil
Crystal structure of HIV-1 reverse transcriptase in complex with N1-ethyl pyrimidinedione non-nucleoside inhibitor
Descriptor: 3-{[3-ethyl-5-(1-methylethyl)-2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl]carbonyl}-5-methylbenzonitrile, HIV Reverse transcriptase, SULFATE ION
Authors:Lansdon, E.B, Mitchell, M.L.
Deposit date:2010-01-06
Release date:2010-02-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:N1-Alkyl pyrimidinediones as non-nucleoside inhibitors of HIV-1 reverse transcriptase.
Bioorg.Med.Chem.Lett., 20, 2010
7WIF
DownloadVisualize
BU of 7wif by Molmil
The THF-II riboswitch bound to H4B
Descriptor: 5,6,7,8-TETRAHYDROBIOPTERIN, RNA (50-MER)
Authors:Xu, L, Fang, X, Xiao, Y.
Deposit date:2022-01-03
Release date:2023-01-18
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Structural insights into translation regulation by the THF-II riboswitch.
Nucleic Acids Res., 51, 2023
7LUK
DownloadVisualize
BU of 7luk by Molmil
CRYSTAL STRUCTURE OF RAR-RELATED ORPHAN RECEPTOR C (NHIS-RORGT(244-487)-L6-SRC1(678-692) IN COMPLEX WITH AN AZATRICYCLIC RORGT INVERSE AGONIST
Descriptor: (2S)-N-[(6aS,7R,9aS)-9a-[(4-fluorophenyl)sulfonyl]-3-(1,1,1,2,3,3,3-heptafluoropropan-2-yl)-6,6a,7,8,9,9a-hexahydro-5H-cyclopenta[f]quinolin-7-yl]-2-hydroxy-2-methyl-3-(methylsulfonyl)propanamide, Nuclear receptor ROR-gamma
Authors:Sack, J.S.
Deposit date:2021-02-22
Release date:2021-05-12
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.087 Å)
Cite:Azatricyclic Inverse Agonists of ROR gamma t That Demonstrate Efficacy in Models of Rheumatoid Arthritis and Psoriasis.
Acs Med.Chem.Lett., 12, 2021

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon