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6KCS
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BU of 6kcs by Molmil
Crystal structure of HIRAN domain of HLTF in complex with duplex DNA
Descriptor: DNA (5'-D(*AP*CP*TP*GP*TP*AP*CP*GP*TP*AP*CP*AP*GP*T)-3'), Helicase-like transcription factor
Authors:Hishiki, A, Hashimoto, A.
Deposit date:2019-06-28
Release date:2020-06-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of HIRAN domain of human HLTF bound to duplex DNA provides structural basis for DNA unwinding to initiate replication fork regression.
J.Biochem., 167, 2020
6KX0
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BU of 6kx0 by Molmil
Crystal structure of SN-101 mAb non-liganded form
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Fab Fragment-SN-101-Heavy chain, Fab Fragment-SN-101-Light chain
Authors:Wakui, H, Tanaka, Y, Kato, K, Ose, T, Matsumoto, I, Min, Y, Tachibana, T, Nishimura, S.-I.
Deposit date:2019-09-09
Release date:2020-07-29
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.404 Å)
Cite:A straightforward approach to antibodies recognising cancer specific glycopeptidic neoepitopes
Chem Sci, 11, 2020
3ASK
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BU of 3ask by Molmil
Structure of UHRF1 in complex with histone tail
Descriptor: E3 ubiquitin-protein ligase UHRF1, Histone H3.3, ZINC ION
Authors:Arita, K, Sugita, K, Unoki, M, Hamamoto, R, Sekiyama, N, Tochio, H, Ariyoshi, M, Shirakawa, M.
Deposit date:2010-12-16
Release date:2012-01-25
Last modified:2025-03-26
Method:X-RAY DIFFRACTION (2.904 Å)
Cite:Recognition of modification status on a histone H3 tail by linked histone reader modules of the epigenetic regulator UHRF1
Proc.Natl.Acad.Sci.USA, 109, 2012
3ASL
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BU of 3asl by Molmil
Structure of UHRF1 in complex with histone tail
Descriptor: 1,2-ETHANEDIOL, E3 ubiquitin-protein ligase UHRF1, Histone H3.3, ...
Authors:Arita, K, Sugita, K, Unoki, M, Hamamoto, R, Sekiyama, N, Tochio, H, Ariyoshi, M, Shirakawa, M.
Deposit date:2010-12-16
Release date:2012-01-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Recognition of modification status on a histone H3 tail by linked histone reader modules of the epigenetic regulator UHRF1
Proc.Natl.Acad.Sci.USA, 109, 2012
3WDN
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BU of 3wdn by Molmil
High-resolution X-ray crystal structure of bovine H-protein using a high-pressure cryocooling method
Descriptor: GLYCEROL, Glycine cleavage system H protein, mitochondrial
Authors:Higashiura, A, Nakagawa, A.
Deposit date:2013-06-19
Release date:2013-10-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (0.86 Å)
Cite:High-resolution X-ray crystal structure of bovine H-protein using the high-pressure cryocooling method
J.SYNCHROTRON RADIAT., 20, 2013
2EB2
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BU of 2eb2 by Molmil
Crystal structure of mutated EGFR kinase domain (G719S)
Descriptor: Epidermal growth factor receptor
Authors:Yoshikawa, S, Kukimoto-Niino, M, Chen, L, Liu, Z.J, Wang, B.C, Shirouzu, M, Senba, K, Yamamoto, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-06
Release date:2008-02-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for the altered drug sensitivities of non-small cell lung cancer-associated mutants of human epidermal growth factor receptor
Oncogene, 2012
2EB3
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BU of 2eb3 by Molmil
Crystal structure of mutated EGFR kinase domain (L858R) in complex with AMPPNP
Descriptor: Epidermal growth factor receptor, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Yoshikawa, S, Kukimoto-Niino, M, Shirouzu, M, Senba, K, Yamamoto, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-06
Release date:2008-02-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Structural basis for the altered drug sensitivities of non-small cell lung cancer-associated mutants of human epidermal growth factor receptor
Oncogene, 2012
3AIZ
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BU of 3aiz by Molmil
Crystal structure of PCNA2-PCNA3 complex from Sulfolobus tokodaii (P21212)
Descriptor: DNA polymerase sliding clamp B, DNA polymerase sliding clamp C, SULFATE ION
Authors:Kawai, A, Higuchi, S, Miyamoto, S.
Deposit date:2010-05-18
Release date:2011-05-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A novel heterotetrameric structure of the crenarchaeal PCNA2-PCNA3 complex
J.Struct.Biol., 174, 2011
3AIX
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BU of 3aix by Molmil
Crystal structure of PCNA2-PCNA3 complex from Sulfolobus tokodaii (I222)
Descriptor: DNA polymerase sliding clamp B, DNA polymerase sliding clamp C, SULFATE ION
Authors:Kawai, A, Higuchi, S, Miyamoto, S.
Deposit date:2010-05-18
Release date:2011-05-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A novel heterotetrameric structure of the crenarchaeal PCNA2-PCNA3 complex
J.Struct.Biol., 174, 2011
3VWA
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BU of 3vwa by Molmil
Crystal structure of Cex1p
Descriptor: Cytoplasmic export protein 1
Authors:Nozawa, K, Ishitani, R, Nureki, O.
Deposit date:2012-08-13
Release date:2013-06-05
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of Cex1p reveals the mechanism of tRNA trafficking between nucleus and cytoplasm
Nucleic Acids Res., 41, 2013
3WKL
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BU of 3wkl by Molmil
The periplasmic PDZ tandem fragment of the RseP homologue from Aquifex aeolicus
Descriptor: Putative Zinc Metalloprotease AQ_1964
Authors:Nogi, T, Tabata, S, Tamura-kawakami, K, Takagi, J.
Deposit date:2013-10-28
Release date:2013-12-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A Structure-Based Model of Substrate Discrimination by a Noncanonical PDZ Tandem in the Intramembrane-Cleaving Protease RseP
Structure, 22, 2013
2E1N
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BU of 2e1n by Molmil
Crystal structure of the Cyanobacterium circadian clock modifier Pex
Descriptor: Pex, SULFATE ION
Authors:Arita, K, Shimizu, T.
Deposit date:2006-10-26
Release date:2006-11-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and Biochemical Characterization of a Cyanobacterium Circadian Clock-modifier Protein
J.Biol.Chem., 282, 2007
3AN2
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BU of 3an2 by Molmil
The structure of the centromeric nucleosome containing CENP-A
Descriptor: 147 mer DNA, Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:Tachiwana, H, Kagawa, W, Shiga, T, Saito, K, Osakabe, A, Hayashi-Takanaka, Y, Park, S.-Y, Kimura, H, Kurumizaka, H.
Deposit date:2010-08-27
Release date:2011-07-20
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Crystal structure of the human centromeric nucleosome containing CENP-A
Nature, 476, 2011
3VJI
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BU of 3vji by Molmil
Human PPAR gamma ligand binding domain in complex with JKPL53
Descriptor: (2S)-2-{4-butoxy-3-[({4-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]benzoyl}amino)methyl]benzyl}butanoic acid, Peroxisome proliferator-activated receptor gamma
Authors:Tomioka, D, Kuwabara, N, Hashimoto, H, Sato, M, Shimizu, T.
Deposit date:2011-10-20
Release date:2012-08-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Peroxisome proliferator-activated receptors (PPARs) have multiple binding points that accommodate ligands in various conformations: phenylpropanoic acid-type PPAR ligands bind to PPAR in different conformations, depending on the subtype.
J.Med.Chem., 55, 2012
3VJH
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BU of 3vjh by Molmil
Human PPAR GAMMA ligand binding domain in complex with JKPL35
Descriptor: (2S)-2-[4-methoxy-3-({[4-(trifluoromethyl)benzoyl]amino}methyl)benzyl]pentanoic acid, Peroxisome proliferator-activated receptor gamma
Authors:Tomioka, D, Kuwabara, N, Hashimoto, H, Sato, M, Shimizu, T.
Deposit date:2011-10-20
Release date:2012-08-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Peroxisome proliferator-activated receptors (PPARs) have multiple binding points that accommodate ligands in various conformations: phenylpropanoic acid-type PPAR ligands bind to PPAR in different conformations, depending on the subtype.
J.Med.Chem., 55, 2012
2D9Q
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BU of 2d9q by Molmil
Crystal Structure of the Human GCSF-Receptor Signaling Complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CSF3, Granulocyte colony-stimulating factor receptor
Authors:Tamada, T, Kuroki, R.
Deposit date:2005-12-12
Release date:2006-02-07
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Homodimeric cross-over structure of the human granulocyte colony-stimulating factor (GCSF) receptor signaling complex
Proc.Natl.Acad.Sci.Usa, 103, 2006
2DLF
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BU of 2dlf by Molmil
HIGH RESOLUTION CRYSTAL STRUCTURE OF THE FV FRAGMENT FROM AN ANTI-DANSYL SWITCH VARIANT ANTIBODY IGG2A(S) CRYSTALLIZED AT PH 6.75
Descriptor: PROTEIN (ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S) (HEAVY CHAIN)), PROTEIN (ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S)-KAPPA (LIGHT CHAIN)), SULFATE ION
Authors:Nakasako, M, Takahashi, H, Shimada, I, Arata, Y.
Deposit date:1998-12-17
Release date:1999-12-17
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:The pH-dependent structural variation of complementarity-determining region H3 in the crystal structures of the Fv fragment from an anti-dansyl monoclonal antibody.
J.Mol.Biol., 291, 1999
2ZFU
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BU of 2zfu by Molmil
Structure of the methyltransferase-like domain of nucleomethylin
Descriptor: Cerebral protein 1, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Minami, H, Hashimoto, H, Murayama, A, Yanagisawa, J, Sato, M, Shimizu, T.
Deposit date:2008-01-14
Release date:2008-12-02
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Epigenetic control of rDNA loci in response to intracellular energy status
Cell(Cambridge,Mass.), 133, 2008
3B0T
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BU of 3b0t by Molmil
Human VDR ligand binding domain in complex with maxacalcitol
Descriptor: (1S,3R,5Z,7E,14beta,17alpha,20S)-20-(3-hydroxy-3-methylbutoxy)-9,10-secopregna-5,7,10-triene-1,3-diol, SULFATE ION, Vitamin D3 receptor
Authors:Hishiki, A, Hashimoto, H, Sato, M, Shimizu, T.
Deposit date:2011-06-14
Release date:2011-08-10
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Human VDR ligand binding domain in complex with maxacalcitol
To be Published
3B0R
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BU of 3b0r by Molmil
Human PPAR gamma ligand binding dmain complexed with GW9662 in a covalent bonded form
Descriptor: 2-chloro-5-nitro-N-phenylbenzamide, Peroxisome proliferator-activated receptor gamma
Authors:Tomioka, D, Hashimoto, H, Sato, M, Shimizu, T.
Deposit date:2011-06-13
Release date:2011-08-10
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Human PPAR gamma ligand binding dmain complexed with GW9662 in a covalent bonded form
To be published
7L38
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BU of 7l38 by Molmil
T4 Lysozyme L99A - Apo - cryo
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BETA-MERCAPTOETHANOL, CHLORIDE ION, ...
Authors:Fischer, M, Bradford, S.Y.C.
Deposit date:2020-12-17
Release date:2021-10-27
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Temperature artifacts in protein structures bias ligand-binding predictions.
Chem Sci, 12, 2021
7L37
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BU of 7l37 by Molmil
T4 Lysozyme L99A - Apo - RT
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BETA-MERCAPTOETHANOL, CHLORIDE ION, ...
Authors:Fischer, M, Bradford, S.Y.C.
Deposit date:2020-12-17
Release date:2021-10-27
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.439 Å)
Cite:Temperature artifacts in protein structures bias ligand-binding predictions.
Chem Sci, 12, 2021
7L3J
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BU of 7l3j by Molmil
T4 Lysozyme L99A - benzylacetate - RT
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BETA-MERCAPTOETHANOL, CHLORIDE ION, ...
Authors:Fischer, M, Bradford, S.Y.C.
Deposit date:2020-12-17
Release date:2021-10-27
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Temperature artifacts in protein structures bias ligand-binding predictions.
Chem Sci, 12, 2021
7L3H
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BU of 7l3h by Molmil
T4 Lysozyme L99A - ethylbenzene - RT
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BETA-MERCAPTOETHANOL, CHLORIDE ION, ...
Authors:Fischer, M, Bradford, S.Y.C.
Deposit date:2020-12-17
Release date:2021-10-27
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Temperature artifacts in protein structures bias ligand-binding predictions.
Chem Sci, 12, 2021
7L3A
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BU of 7l3a by Molmil
T4 Lysozyme L99A - toluene - cryo
Descriptor: Endolysin, TOLUENE
Authors:Fischer, M, Bradford, S.Y.C.
Deposit date:2020-12-17
Release date:2021-10-27
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.11 Å)
Cite:Temperature artifacts in protein structures bias ligand-binding predictions.
Chem Sci, 12, 2021

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