2K17
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SOLUTION STRUCTURE OF THE TAF3 PHD DOMAIN IN COMPLEX WITH A H3K4ME3 PEPTIDE
Descriptor:H3K4me3 peptide, Transcription initiation factor TFIID subunit 3, ZINC ION
Authors:van Ingen, H., van Schaik, F.M.A., Wienk, H., Timmers, M., Boelens, R.
Deposit date:2008-02-22
Release date:2008-07-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Recognition of the H3K4me3 mark by the TAF3-PHD finger
To be Published
2G6Q
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CRYSTAL STRUCTURE OF ING2 PHD FINGER IN COMPLEX WITH H3K4ME3 PEPTIDE
Descriptor:Inhibitor of growth protein 2, H3K4Me3 peptide, ZINC ION
Authors:Pena, P.V., Zhao, R., Kutateladze, T.G.
Deposit date:2006-02-24
Release date:2006-07-11
Last modified:2013-07-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2.
Nature, 442, 2006
2QIC
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CRYSTAL STRUCTURE OF THE ING1 PHD FINGER IN COMPLEX WITH A HISTONE H3K4ME3 PEPTIDE
Descriptor:Inhibitor of growth protein 1, H3K4ME3 PEPTIDE, ZINC ION
Authors:Pena, P.V., Champagne, K., Zhao, R., Kutateladze, T.G.
Deposit date:2007-07-03
Release date:2008-05-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Histone H3K4me3 binding is required for the DNA repair and apoptotic activities of ING1 tumor suppressor.
J.Mol.Biol., 380, 2008
5YC4
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CRYSTAL STRUCTURE OF AL3 PHD FINGER BOUND TO H3K4ME3
Descriptor:PHD finger protein ALFIN-LIKE 3, Histone H3K4me3, ZINC ION
Authors:Zhao, S., Zhang, B., Li, H.
Deposit date:2017-09-06
Release date:2018-01-24
Method:X-RAY DIFFRACTION (2.697 Å)
Cite:Crystal structure of AL1 PHD finger bound to H3K4me3
Cell Rep, 2018
3C6W
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CRYSTAL STRUCTURE OF THE ING5 PHD FINGER IN COMPLEX WITH H3K4ME3 PEPTIDE
Descriptor:Inhibitor of growth protein 5, H3K4me3 histone peptide, ZINC ION
Authors:Champagne, K.S., Pena, P.V., Johnson, K., Kutateladze, T.G.
Deposit date:2008-02-05
Release date:2008-06-03
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The crystal structure of the ING5 PHD finger in complex with an H3K4me3 histone peptide.
Proteins, 72, 2008
4UY4
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1.86 A STRUCTURE OF HUMAN SPINDLIN-4 PROTEIN IN COMPLEX WITH HISTONE H3K4ME3 PEPTIDE
Descriptor:SPINDLIN-4, HISTONE H3K4ME3, GLYCEROL
Authors:Talon, R., Gileadi, C., Johansson, C., Burgess-Brown, N., Shrestha, L., von Delft, F., Krojer, T., Fairhead, M., Bountra, C., Arrowsmith, C.H., Edwards, A., Oppermann, U.
Deposit date:2014-08-28
Release date:2014-09-24
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.862 Å)
Cite:1.86 A Structure of Human Spindlin-4 Protein in Complex with Histone H3K4Me3 Peptide
To be Published
5IX1
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CRYSTAL STRUCTURE OF MOUSE MORC3 ATPASE-CW CASSETTE IN COMPLEX WITH AMPPNP AND H3K4ME3 PEPTIDE
Descriptor:MORC family CW-type zinc finger protein 3, Peptide from Histone H3.1, ZINC ION, ...
Authors:Li, S., Du, J., Patel, D.J.
Deposit date:2016-03-23
Release date:2016-08-17
Last modified:2016-09-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Mouse MORC3 is a GHKL ATPase that localizes to H3K4me3 marked chromatin
Proc.Natl.Acad.Sci.USA, 113, 2016
5YKO
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CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA JMJ14 CATALYTIC DOMAIN IN COMPLEX WITH NOG AND H3K4ME3 PEPTIDE
Descriptor:Probable lysine-specific demethylase JMJ14, H3(1-10)K4me3 peptide, NICKEL (II) ION, ...
Authors:Yang, Z., Du, J.
Deposit date:2017-10-15
Release date:2017-12-27
Last modified:2018-02-28
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of the Arabidopsis JMJ14-H3K4me3 Complex Provides Insight into the Substrate Specificity of KDM5 Subfamily Histone Demethylases.
Plant Cell, 30, 2018
5ZNP
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CRYSTAL STRUCTURE OF PTSHL IN COMPLEX WITH AN H3K4ME3 PEPTIDE
Descriptor:SHORT LIFE family protein, 15-mer peptide from Histone H3.2, ZINC ION
Authors:Lv, X., Du, J.
Deposit date:2018-04-10
Release date:2018-07-18
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Dual recognition of H3K4me3 and H3K27me3 by a plant histone reader SHL.
Nat Commun, 9, 2018
2VNF
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MOLECULAR BASIS OF HISTONE H3K4ME3 RECOGNITION BY ING4
Descriptor:INHIBITOR OF GROWTH PROTEIN 4, HISTONE H3, SODIUM ION, ...
Authors:Palacios, A., Munoz, I.G., Pantoja-Uceda, D., Marcaida, M.J., Torres, D., Martin-Garcia, J.M., Luque, I., Montoya, G., Blanco, F.J.
Deposit date:2008-02-04
Release date:2008-04-01
Last modified:2016-12-28
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Molecular Basis of Histone H3K4Me3 Recognition by Ing4
J.Biol.Chem., 283, 2008
5Y20
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CRYSTAL STRUCTURE OF AL1 PHD FINGER BOUND TO H3K4ME3
Descriptor:PHD finger protein ALFIN-LIKE 1, PEPTIDE FROM HISTONE H3, ZINC ION
Authors:Zhao, S., Zhang, B., Li, H.
Deposit date:2017-07-22
Release date:2018-01-24
Method:X-RAY DIFFRACTION (2.409 Å)
Cite:Crystal structure of AL1 PHD finger bound to H3K4me3
Cell Rep, 2018
4PL6
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STRUCTURE OF THE CHROMODOMAIN OF MRG2 IN COMPLEX WITH H3K4ME3
Descriptor:At1g02740, H3K4me3
Authors:Liu, Y.C., Huang, Y.
Deposit date:2014-05-16
Release date:2015-07-22
Last modified:2016-05-04
Method:X-RAY DIFFRACTION (1.681 Å)
Cite:Regulation of arabidopsis flowering by the histone mark readers MRG1/2 via interaction with CONSTANS to modulate FT expression.
Plos Genet., 10, 2014
4YHZ
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CRYSTAL STRUCTURE OF 304M3-B FAB IN COMPLEX WITH H3K4ME3 PEPTIDE
Descriptor:Fab Heavy Chain, Fab Light Chain, H3K4me3 peptide, ...
Authors:Hattori, T., Dementieva, I.S., Montano, S.P., Koide, S.
Deposit date:2015-02-27
Release date:2016-02-10
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (2.304 Å)
Cite:Antigen clasping by two antigen-binding sites of an exceptionally specific antibody for histone methylation.
Proc.Natl.Acad.Sci.USA, 113, 2016
5WXH
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CRYSTAL STRUCTURE OF TAF3 PHD FINGER BOUND TO H3K4ME3
Descriptor:Transcription initiation factor TFIID subunit 3, Histone H3K4me3, ZINC ION
Authors:Zhao, S., Huang, J., Li, H.
Deposit date:2017-01-07
Release date:2017-08-16
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (1.297 Å)
Cite:Kinetic and high-throughput profiling of epigenetic interactions by 3D-carbene chip-based surface plasmon resonance imaging technology
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
2PNX
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THE PHD FINGER OF ING4 IN COMPLEX WITH AN H3K4ME3 HISTONE PEPTIDE
Descriptor:Inhibitor of growth protein 4, H3K4Me3 peptide, ZINC ION
Authors:Champagne, K.S., Johnson, K., Kutateladze, T.G.
Deposit date:2007-04-25
Release date:2008-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:ING4 mediates crosstalk between histone H3 K4 trimethylation and H3 acetylation to attenuate cellular transformation
Mol.Cell, 33, 2009
3O7A
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CRYSTAL STRUCTURE OF PHF13 IN COMPLEX WITH H3K4ME3
Descriptor:PHD finger protein 13 variant, H3K4ME3 HISTONE 11MER-PEPTIDE, GLYCEROL, ...
Authors:Bian, C.B., Lam, R., Xu, C., Bountra, C., Arrowsmith, C.H., Weigelt, J., Edwards, A.M., Bochkarev, A., Min, J., Structural Genomics Consortium (SGC)
Deposit date:2010-07-30
Release date:2010-10-06
Last modified:2016-06-22
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:PHF13 is a molecular reader and transcriptional co-regulator of H3K4me2/3.
Elife, 5, 2016
5SVX
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MORC3 CW IN COMPLEX WITH HISTONE H3K4ME3
Descriptor:MORC family CW-type zinc finger protein 3, H3K4me3, ZINC ION
Authors:Tong, Q., Andrews, F.H., Kutateladze, T.G.
Deposit date:2016-08-08
Release date:2016-10-05
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Multivalent Chromatin Engagement and Inter-domain Crosstalk Regulate MORC3 ATPase.
Cell Rep, 16, 2016
5TDW
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SET3 PHD FINGER IN COMPLEX WITH HISTONE H3K4ME3
Descriptor:SET domain-containing protein 3, histone H3K4me3, ZINC ION, ...
Authors:Andrews, F.H., Ali, M., Kutateladze, T.G.
Deposit date:2016-09-19
Release date:2016-10-19
Last modified:2017-06-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Insight into Recognition of Methylated Histone H3K4 by Set3.
J. Mol. Biol., 429, 2017
5WLE
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CRYSTAL STRUCTURE OF THE PPS PHD FINGER IN COMPLEX WITH H3K4ME3
Descriptor:Protein partner of snf, isoform A, H3K4me3 Peptide, ...
Authors:Klein, B.J., Kutateladze, T.G.
Deposit date:2017-07-26
Release date:2017-10-04
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.952 Å)
Cite:A Unique pH-Dependent Recognition of Methylated Histone H3K4 by PPS and DIDO.
Structure, 25, 2017
2FUI
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NMR SOLUTION STRUCTURE OF PHD FINGER FRAGMENT OF HUMAN BPTF IN FREE STATE
Descriptor:bromodomain PHD finger transcription factor
Authors:Ilin, S., Patel, D.J.
Deposit date:2006-01-26
Release date:2006-07-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF.
Nature, 442, 2006
2FUU
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NMR SOLUTION STRUCTURE OF THE PHD DOMAIN FROM THE HUMAN BPTF IN COMPLEX WITH H3(1-15)K4ME3 PEPTIDE
Descriptor:bromodomain PHD finger transcription factor, Histone H3, ZINC ION
Authors:Ilin, S., Patel, D.J.
Deposit date:2006-01-27
Release date:2006-07-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF.
Nature, 442, 2006
3KQI
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CRYSTAL STRUCTURE OF PHF2 PHD DOMAIN COMPLEXED WITH H3K4ME3 PEPTIDE
Descriptor:PHD finger protein 2, H3K4Me3 peptide, ZINC ION, ...
Authors:Wen, H., Li, J.Z., Song, T., Lu, M., Lee, M.
Deposit date:2009-11-17
Release date:2010-02-02
Last modified:2019-02-13
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Recognition of histone H3K4 trimethylation by the plant homeodomain of PHF2 modulates histone demethylation.
J.Biol.Chem., 285, 2010
5ME8
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N-TERMINAL DOMAIN OF THE HUMAN TUMOR SUPPRESSOR ING5
Descriptor:Inhibitor of growth protein 5, (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL
Authors:Roversi, P., Blanco, F.J., Rojas, A.L., Buitrago, J.A.R.
Deposit date:2016-11-14
Release date:2018-03-14
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The tumor suppressor ING5 is a dimeric molecule with Bivalent Recognition of the H3K4me3 mark
To Be Published
5YC3
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CRYSTAL STRUCTURE OF AL3 PHD FINGER BOUND TO H3K4ME2
Descriptor:PHD finger protein ALFIN-LIKE 3, H3K4me2, ZINC ION
Authors:Zhao, S., Zhang, B., Li, H.
Deposit date:2017-09-06
Release date:2018-01-24
Method:X-RAY DIFFRACTION (2.601 Å)
Cite:Crystal structure of AL1 PHD finger bound to H3K4me3
Cell Rep, 2018
5YKN
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CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA JMJ14 CATALYTIC DOMAIN
Descriptor:Probable lysine-specific demethylase JMJ14, NICKEL (II) ION, ZINC ION
Authors:Yang, Z., Du, J.
Deposit date:2017-10-15
Release date:2017-12-27
Last modified:2018-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the Arabidopsis JMJ14-H3K4me3 Complex Provides Insight into the Substrate Specificity of KDM5 Subfamily Histone Demethylases.
Plant Cell, 30, 2018
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