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Yorodumi- PDB-2x5d: Crystal Structure of a probable aminotransferase from Pseudomonas... -
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Open data
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Basic information
| Entry | Database: PDB / ID: 2x5d | ||||||
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| Title | Crystal Structure of a probable aminotransferase from Pseudomonas aeruginosa | ||||||
Components | PROBABLE AMINOTRANSFERASE | ||||||
Keywords | TRANSFERASE | ||||||
| Function / homology | Function and homology informationL-alanine biosynthetic process from pyruvate / D-alanine biosynthetic process / transaminase activity / pyridoxal phosphate binding Similarity search - Function | ||||||
| Biological species | ![]() | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.25 Å | ||||||
Authors | Oke, M. / Carter, L.G. / Johnson, K.A. / Liu, H. / Mcmahon, S.A. / White, M.F. / Naismith, J.H. | ||||||
Citation | Journal: J.Struct.Funct.Genom. / Year: 2010Title: The Scottish Structural Proteomics Facility: Targets, Methods and Outputs. Authors: Oke, M. / Carter, L.G. / Johnson, K.A. / Liu, H. / Mcmahon, S.A. / Yan, X. / Kerou, M. / Weikart, N.D. / Kadi, N. / Sheikh, M.A. / Schmelz, S. / Dorward, M. / Zawadzki, M. / Cozens, C. / ...Authors: Oke, M. / Carter, L.G. / Johnson, K.A. / Liu, H. / Mcmahon, S.A. / Yan, X. / Kerou, M. / Weikart, N.D. / Kadi, N. / Sheikh, M.A. / Schmelz, S. / Dorward, M. / Zawadzki, M. / Cozens, C. / Falconer, H. / Powers, H. / Overton, I.M. / Van Niekerk, C.A.J. / Peng, X. / Patel, P. / Garrett, R.A. / Prangishvili, D. / Botting, C.H. / Coote, P.J. / Dryden, D.T.F. / Barton, G.J. / Schwarz-Linek, U. / Challis, G.L. / Taylor, G.L. / White, M.F. / Naismith, J.H. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 2x5d.cif.gz | 597.2 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb2x5d.ent.gz | 497.8 KB | Display | PDB format |
| PDBx/mmJSON format | 2x5d.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 2x5d_validation.pdf.gz | 500.3 KB | Display | wwPDB validaton report |
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| Full document | 2x5d_full_validation.pdf.gz | 525.3 KB | Display | |
| Data in XML | 2x5d_validation.xml.gz | 55.2 KB | Display | |
| Data in CIF | 2x5d_validation.cif.gz | 76.8 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/x5/2x5d ftp://data.pdbj.org/pub/pdb/validation_reports/x5/2x5d | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 2ivyC ![]() 2jg5C ![]() 2jg6C ![]() 2vw8C ![]() 2vxzC ![]() 2wj9C ![]() 2x0oC ![]() 2x3dC ![]() 2x3eC ![]() 2x3fC ![]() 2x3gC ![]() 2x3lC ![]() 2x3mC ![]() 2x3nC ![]() 2x3oC ![]() 2x48C ![]() 2x4gC ![]() 2x4hC ![]() 2x4iC ![]() 2x4jC ![]() 2x4kC ![]() 2x4lC ![]() 2x5cC ![]() 2x5fC ![]() 2x5gC ![]() 2x5hC ![]() 2x5pC ![]() 2x5qC ![]() 2x5rC ![]() 2x5tC ![]() 2x7bC ![]() 2x7iC ![]() 2xu2C ![]() 2douS C: citing same article ( S: Starting model for refinement |
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| Similar structure data |
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Assembly
| Deposited unit | ![]()
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Refine code: 5
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