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- PDB-1gr7: Crystal structure of the double mutant Cys3Ser/Ser100Pro from Pse... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1gr7 | ||||||
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Title | Crystal structure of the double mutant Cys3Ser/Ser100Pro from Pseudomonas Aeruginosa at 1.8 A resolution | ||||||
![]() | AZURIN | ||||||
![]() | ELECTRON TRANSPORT | ||||||
Function / homology | ![]() transition metal ion binding / periplasmic space / electron transfer activity / copper ion binding / zinc ion binding / identical protein binding Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Okvist, M. / Bonander, N. / Sandberg, A. / Karlsson, B.G. / Krengel, U. / Xue, Y. / Sjolin, L. | ||||||
![]() | ![]() Title: Crystal structure of the double azurin mutant Cys3Ser/Ser100Pro from Pseudomonas aeruginosa at 1.8 A resolution: its folding-unfolding energy and unfolding kinetics. Authors: Okvist, M. / Bonander, N. / Sandberg, A. / Karlsson, B.G. / Krengel, U. / Xue, Y. / Sjolin, L. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 106.2 KB | Display | ![]() |
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PDB format | ![]() | 87.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 454 KB | Display | ![]() |
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Full document | ![]() | 458.8 KB | Display | |
Data in XML | ![]() | 21.7 KB | Display | |
Data in CIF | ![]() | 30.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS oper:
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Details | THE MOLECULE FUNCTIONS AS A MONOMER |
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Components
#1: Protein | Mass: 13971.771 Da / Num. of mol.: 4 / Mutation: YES Source method: isolated from a genetically manipulated source Details: OXIDIZED CYSTEINE AT POSITION 26. / Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Chemical | ChemComp-CU / #3: Water | ChemComp-HOH / | Sequence details | ENGINEERED | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.3 Å3/Da / Density % sol: 45 % | ||||||||||||||||||||||||||||
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Crystal grow | pH: 5.5 Details: 3.2 M AMMONIUM SULPHATE, 1.0 M LITHIUM NITRATE, 0.2 M ACETATE BUFFER PH 5.5 | ||||||||||||||||||||||||||||
Crystal grow | *PLUS Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 293 K |
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Diffraction source | Source: ![]() |
Detector | Type: MSC / Detector: IMAGE PLATE |
Radiation | Monochromator: GRAPHITE CRYSTAL / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 1.8→30 Å / Num. obs: 248852 / % possible obs: 89.2 % / Redundancy: 5.6 % / Rmerge(I) obs: 0.066 / Net I/σ(I): 10.7 |
Reflection shell | Resolution: 1.8→1.86 Å / Redundancy: 2.9 % / Rmerge(I) obs: 0.46 / Mean I/σ(I) obs: 2.2 / % possible all: 53.7 |
Reflection | *PLUS Num. obs: 42969 / Num. measured all: 248852 |
Reflection shell | *PLUS Highest resolution: 1.8 Å / % possible obs: 53.7 % / Mean I/σ(I) obs: 2.1 |
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Processing
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Refinement | Method to determine structure: ![]()
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Refinement step | Cycle: LAST / Resolution: 1.8→72.55 Å
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Refinement | *PLUS Lowest resolution: 72.5 Å / % reflection Rfree: 5 % / Rfactor obs: 0.175 / Rfactor Rfree: 0.208 / Rfactor Rwork: 0.175 | ||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||
Refine LS restraints | *PLUS
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