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Structure paper

タイトルAn integrated experimental and computational pipeline for crystallographic fragment screening of membrane protein in the lipid cubic phase.
ジャーナル・号・ページCommun Chem, Year 2026
掲載日2025年8月21日 (構造データの登録日)
著者Huang, C.Y. / Cheng, R. / Metz, A. / Bucher, D. / Andres, F. / Bacchin, A. / Glover, H. / Sager, C.P. / Wang, M. / Steinmetz, M.O. ...Huang, C.Y. / Cheng, R. / Metz, A. / Bucher, D. / Andres, F. / Bacchin, A. / Glover, H. / Sager, C.P. / Wang, M. / Steinmetz, M.O. / Hennig, M. / Sharpe, M.
リンクCommun Chem / PubMed:42129437
手法X線回折
解像度1.84 - 2.81 Å
構造データ

PDB-7in1:
Crystal structure of A2A in complex with TEP for 21h
手法: X-RAY DIFFRACTION / 解像度: 2.49 Å

PDB-7in2:
Crystal structure of A2A in complex with 1 mM ZM241385 for 21h
手法: X-RAY DIFFRACTION / 解像度: 2.43 Å

PDB-7in3:
Crystal structure of A2A in complex with 5 mM ZM241385 for 21h
手法: X-RAY DIFFRACTION / 解像度: 2.66 Å

PDB-7in4:
Crystal structure of A2A in complex with 10 mM ZM241385 for 21h
手法: X-RAY DIFFRACTION / 解像度: 2.66 Å

PDB-7in5:
Crystal structure of A2A in complex with TEP for 3h
手法: X-RAY DIFFRACTION / 解像度: 2.49 Å

PDB-7in6:
Crystal structure of A2A in complex with 1 mM ZM241385 for 3h
手法: X-RAY DIFFRACTION / 解像度: 2.52 Å

PDB-7in7:
Crystal structure of A2A in complex with 5 mM ZM241385 for 3h
手法: X-RAY DIFFRACTION / 解像度: 2.43 Å

PDB-7in8:
Crystal structure of A2A in complex with 10 mM ZM241385 for 3h
手法: X-RAY DIFFRACTION / 解像度: 2.52 Å

PDB-7in9:
Crystal structure of A2A in complex with Fi16
手法: X-RAY DIFFRACTION / 解像度: 2.54 Å

PDB-7ina:
Crystal structure of A2A in complex with F2
手法: X-RAY DIFFRACTION / 解像度: 2.15 Å

PDB-7inb:
Crystal structure of A2A in complex with F4
手法: X-RAY DIFFRACTION / 解像度: 2.1 Å

PDB-7inc:
Crystal structure of A2A in complex with F7
手法: X-RAY DIFFRACTION / 解像度: 2.18 Å

PDB-7ind:
Crystal structure of A2A in complex with F12
手法: X-RAY DIFFRACTION / 解像度: 2.67 Å

PDB-7ine:
Crystal structure of A2A in complex with F35
手法: X-RAY DIFFRACTION / 解像度: 2.28 Å

PDB-7inf:
Crystal structure of A2A in complex with F44
手法: X-RAY DIFFRACTION / 解像度: 2.26 Å

PDB-7ing:
Crystal structure of A2A in complex with F99
手法: X-RAY DIFFRACTION / 解像度: 2.15 Å

PDB-7inh:
Crystal structure of A2A in complex with F132
手法: X-RAY DIFFRACTION / 解像度: 2.3 Å

PDB-7ini:
Crystal structure of A2A in complex with F135
手法: X-RAY DIFFRACTION / 解像度: 2.57 Å

PDB-7inj:
Crystal structure of A2A in complex with F148
手法: X-RAY DIFFRACTION / 解像度: 2.1 Å

PDB-7ink:
Crystal structure of A2A in complex with F163
手法: X-RAY DIFFRACTION / 解像度: 2.19 Å

PDB-7inl:
Crystal structure of A2A in complex with F173
手法: X-RAY DIFFRACTION / 解像度: 2.2 Å

PDB-7inm:
Crystal structure of A2A in complex with F178
手法: X-RAY DIFFRACTION / 解像度: 2.19 Å

PDB-7inn:
Crystal structure of A2A in complex with F210
手法: X-RAY DIFFRACTION / 解像度: 2.32 Å

PDB-7ino:
Crystal structure of A2A in complex with F223
手法: X-RAY DIFFRACTION / 解像度: 2.08 Å

PDB-7inp:
Crystal structure of A2A in complex with F235
手法: X-RAY DIFFRACTION / 解像度: 2.21 Å

PDB-7inq:
Crystal structure of A2A in complex with F242
手法: X-RAY DIFFRACTION / 解像度: 2.19 Å

PDB-7inr:
Crystal structure of A2A in complex with F273
手法: X-RAY DIFFRACTION / 解像度: 2.13 Å

PDB-7int:
Crystal structure of A2A in complex with F293
手法: X-RAY DIFFRACTION / 解像度: 2.25 Å

PDB-7inu:
Crystal structure of A2A in complex with F336
手法: X-RAY DIFFRACTION / 解像度: 2.46 Å

PDB-7inv:
Crystal structure of A2A in complex with F379
手法: X-RAY DIFFRACTION / 解像度: 2.57 Å

PDB-7inw:
Crystal structure of A2A in complex with F428
手法: X-RAY DIFFRACTION / 解像度: 2.59 Å

PDB-7inx:
Crystal structure of A2A in complex with FU2-57
手法: X-RAY DIFFRACTION / 解像度: 2.31 Å

PDB-7iny:
Crystal structure of A2A in complex with FU2-59
手法: X-RAY DIFFRACTION / 解像度: 2.36 Å

PDB-7inz:
Crystal structure of A2A in complex with FU4-40
手法: X-RAY DIFFRACTION / 解像度: 2.41 Å

PDB-7io0:
Crystal structure of A2A in complex with FU4-54
手法: X-RAY DIFFRACTION / 解像度: 2.05 Å

PDB-7io1:
Crystal structure of A2A in complex with FU7-1
手法: X-RAY DIFFRACTION / 解像度: 2.25 Å

PDB-7io2:
Crystal structure of A2A in complex with FU7-15
手法: X-RAY DIFFRACTION / 解像度: 1.96 Å

PDB-7io3:
Crystal structure of A2A in complex with FU7-29
手法: X-RAY DIFFRACTION / 解像度: 2.22 Å

PDB-7io4:
Crystal structure of A2A in complex with FU12-19
手法: X-RAY DIFFRACTION / 解像度: 2.1 Å

PDB-7io5:
Crystal structure of A2A in complex with FU12-45
手法: X-RAY DIFFRACTION / 解像度: 1.84 Å

PDB-7io6:
Crystal structure of A2A in complex with FU12-86
手法: X-RAY DIFFRACTION / 解像度: 2.36 Å

PDB-7io7:
Crystal structure of A2A in complex with FU18-60
手法: X-RAY DIFFRACTION / 解像度: 2.23 Å

PDB-7io8:
Crystal structure of A2A in complex with FU18-82
手法: X-RAY DIFFRACTION / 解像度: 2.27 Å

PDB-7io9:
Crystal structure of A2A in complex with FU35-2
手法: X-RAY DIFFRACTION / 解像度: 1.91 Å

PDB-7ioa:
Crystal structure of A2A in complex with FU35-5
手法: X-RAY DIFFRACTION / 解像度: 2.1 Å

PDB-7iob:
Crystal structure of A2A in complex with FU35-42
手法: X-RAY DIFFRACTION / 解像度: 2.11 Å

PDB-7ioc:
Crystal structure of A2A in complex with FU18-82
手法: X-RAY DIFFRACTION / 解像度: 2.07 Å

PDB-7iod:
Crystal structure of A2A in complex with FU35-78
手法: X-RAY DIFFRACTION / 解像度: 2.4 Å

PDB-7ioe:
Crystal structure of A2A in complex with FU44-18
手法: X-RAY DIFFRACTION / 解像度: 2.08 Å

PDB-7iof:
Crystal structure of A2A in complex with FU99-31
手法: X-RAY DIFFRACTION / 解像度: 1.9 Å

PDB-7iog:
Crystal structure of A2A in complex with FU99-89
手法: X-RAY DIFFRACTION / 解像度: 1.98 Å

PDB-7ioh:
Crystal structure of A2A in complex with FU99-91
手法: X-RAY DIFFRACTION / 解像度: 2.07 Å

PDB-7ioi:
Crystal structure of A2A in complex with FU101-88
手法: X-RAY DIFFRACTION / 解像度: 2.04 Å

PDB-7ioj:
Crystal structure of A2A in complex with FU113-13
手法: X-RAY DIFFRACTION / 解像度: 2.26 Å

PDB-7iok:
Crystal structure of A2A in complex with FU113-99
手法: X-RAY DIFFRACTION / 解像度: 2.3 Å

PDB-7iol:
Crystal structure of A2A in complex with FU132-3
手法: X-RAY DIFFRACTION / 解像度: 2.81 Å

PDB-7iom:
Crystal structure of A2A in complex with FU18-82
手法: X-RAY DIFFRACTION / 解像度: 2.1 Å

PDB-7ion:
Crystal structure of A2A in complex with FU132-90
手法: X-RAY DIFFRACTION / 解像度: 2.14 Å

PDB-7ioo:
Crystal structure of A2A in complex with FU132,428-27
手法: X-RAY DIFFRACTION / 解像度: 2.01 Å

PDB-7iop:
Crystal structure of A2A in complex with FU163-33
手法: X-RAY DIFFRACTION / 解像度: 1.92 Å

PDB-7ioq:
Crystal structure of A2A in complex with FU163-51
手法: X-RAY DIFFRACTION / 解像度: 2.26 Å

PDB-7ior:
Crystal structure of A2A in complex with FU163-53
手法: X-RAY DIFFRACTION / 解像度: 1.89 Å

PDB-7ios:
Crystal structure of A2A in complex with FU163-58
手法: X-RAY DIFFRACTION / 解像度: 2.38 Å

PDB-7iot:
Crystal structure of A2A in complex with FU163-67
手法: X-RAY DIFFRACTION / 解像度: 2.31 Å

PDB-7iou:
Crystal structure of A2A in complex with FU163-75
手法: X-RAY DIFFRACTION / 解像度: 2.17 Å

PDB-7iov:
Crystal structure of A2A in complex with FU163-104
手法: X-RAY DIFFRACTION / 解像度: 2.3 Å

PDB-7iow:
Crystal structure of A2A in complex with FU163-106
手法: X-RAY DIFFRACTION / 解像度: 2.17 Å

PDB-7iox:
Crystal structure of A2A in complex with FU163-109
手法: X-RAY DIFFRACTION / 解像度: 2.15 Å

PDB-7ioy:
Crystal structure of A2A in complex with FU210-12
手法: X-RAY DIFFRACTION / 解像度: 2 Å

PDB-7ioz:
Crystal structure of A2A in complex with FU223-7
手法: X-RAY DIFFRACTION / 解像度: 1.88 Å

PDB-7ip0:
Crystal structure of A2A in complex with FU223-43
手法: X-RAY DIFFRACTION / 解像度: 1.99 Å

PDB-7ip1:
Crystal structure of A2A in complex with FU235-66
手法: X-RAY DIFFRACTION / 解像度: 2.29 Å

PDB-7ip2:
Crystal structure of A2A in complex with FU242-98
手法: X-RAY DIFFRACTION / 解像度: 2.13 Å

PDB-7ip3:
Crystal structure of A2A in complex with FU273-23
手法: X-RAY DIFFRACTION / 解像度: 2.11 Å

PDB-7ip4:
Crystal structure of A2A in complex with FU273-77
手法: X-RAY DIFFRACTION / 解像度: 2.04 Å

PDB-7ip5:
Crystal structure of A2A in complex with FU293-69
手法: X-RAY DIFFRACTION / 解像度: 1.95 Å

PDB-7ip6:
Crystal structure of A2A in complex with FU293-80
手法: X-RAY DIFFRACTION / 解像度: 2.07 Å

PDB-7ip7:
Crystal structure of A2A in complex with FU293-87
手法: X-RAY DIFFRACTION / 解像度: 2.32 Å

PDB-7ip8:
Crystal structure of A2A in complex with FU300-24
手法: X-RAY DIFFRACTION / 解像度: 2.28 Å

PDB-7ip9:
Crystal structure of A2A in complex with FU336-22
手法: X-RAY DIFFRACTION / 解像度: 2.1 Å

PDB-7ipa:
Crystal structure of A2A in complex with FU336-32
手法: X-RAY DIFFRACTION / 解像度: 2.32 Å

PDB-7ipb:
Crystal structure of A2A in complex with FU336-34
手法: X-RAY DIFFRACTION / 解像度: 2.09 Å

PDB-7ipc:
Crystal structure of A2A in complex with FU336-61
手法: X-RAY DIFFRACTION / 解像度: 1.87 Å

PDB-7ipd:
Crystal structure of A2A in complex with FU379-101
手法: X-RAY DIFFRACTION / 解像度: 2.19 Å

PDB-7ipe:
Crystal structure of A2A in complex with FU428-8
手法: X-RAY DIFFRACTION / 解像度: 1.84 Å

PDB-7ipf:
Crystal structure of A2A in complex with FU428-16
手法: X-RAY DIFFRACTION / 解像度: 1.9 Å

PDB-7ipg:
Crystal structure of A2A in complex with FU428-36
手法: X-RAY DIFFRACTION / 解像度: 2.06 Å

化合物

ChemComp-NA:
Unknown entry

ChemComp-CLR:
CHOLESTEROL

ChemComp-OLA:
OLEIC ACID

ChemComp-OLC:
(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate

ChemComp-HOH:
WATER

PDB-1com:
THE MONOFUNCTIONAL CHORISMATE MUTASE FROM BACILLUS SUBTILIS: STRUCTURE DETERMINATION OF CHORISMATE MUTASE AND ITS COMPLEXES WITH A TRANSITION STATE ANALOG AND PREPHENATE, AND IMPLICATIONS ON THE MECHANISM OF ENZYMATIC REACTION

PDB-1con:
THE REFINED STRUCTURE OF CADMIUM SUBSTITUTED CONCANAVALIN A AT 2.0 ANGSTROMS RESOLUTION

ChemComp-TEP:
THEOPHYLLINE

ChemComp-DMS:
DIMETHYL SULFOXIDE / DMSO, 沈殿剤*YM

ChemComp-8ZX:
4-methoxybenzamide

PDB-1cop:
THREE-DIMENSIONAL DIMER STRUCTURE OF THE LAMBDA-CRO REPRESSOR IN SOLUTION AS DETERMINED BY HETERONUCLEAR MULTIDIMENSIONAL NMR

PDB-1coo:
THE COOH-TERMINAL DOMAIN OF RNA POLYMERASE ALPHA SUBUNIT


化合物 画像なし

ChemComp-VN9:
Unknown entry

ChemComp-ES2:
6-chloro-1,3-dihydro-2H-indol-2-one

PDB-1cor:
INVESTIGATION OF THE SOLUTION CONFORMATION OF CYTOCHROME C-551 FROM PSEUDOMONAS STUTZERI

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

PDB-1cov:
COXSACKIEVIRUS B3 COAT PROTEIN

PDB-1cow:
BOVINE MITOCHONDRIAL F1-ATPASE COMPLEXED WITH AUROVERTIN B

PDB-1coy:
CRYSTAL STRUCTURE OF CHOLESTEROL OXIDASE COMPLEXED WITH A STEROID SUBSTRATE. IMPLICATIONS FOR FAD DEPENDENT ALCOHOL OXIDASES

ChemComp-U4D:
5-(trifluoromethyl)pyridin-2-one

PDB-1coz:
CTP:GLYCEROL-3-PHOSPHATE CYTIDYLYLTRANSFERASE FROM BACILLUS SUBTILIS

PDB-1co0:
NMR STUDY OF TRP REPRESSOR-MTR OPERATOR DNA COMPLEX

ChemComp-YPN:
2-[(5-CHLORO-2-PYRIDYL)SULFANYL]ETHANOL

ChemComp-2O8:
4-[(trifluoromethyl)sulfanyl]benzamide

ChemComp-LR5:
4-(trifluoromethyl)benzamide

PDB-1co1:
FOLD OF THE CBFA

PDB-1co2:
Unknown entry


化合物 画像なし

ChemComp-Y25:
Unknown entry

PDB-1bl1:
PTH RECEPTOR N-TERMINUS FRAGMENT, NMR, 1 STRUCTURE

PDB-1cs6:
N-TERMINAL FRAGMENT OF AXONIN-1 FROM CHICKEN

PDB-1co5:
Unknown entry

PDB-1co6:
CRYSTAL STRUCTURE OF FERROCYTOCHROME C2 FROM RHODOPSEUDOMONAS VIRIDIS

PDB-1co7:
R117H mutant rat anionic trypsin complexed with bovine pancreatic trypsin inhibitor (BPTI)

PDB-1co8:
RECOMBINANT SPERM WHALE MYOGLOBIN L104A MUTANT (MET)

PDB-1co9:
RECOMBINANT SPERM WHALE MYOGLOBIN L104V MUTANT (MET)

PDB-1igl:
SOLUTION STRUCTURE OF HUMAN INSULIN-LIKE GROWTH FACTOR II RELATIONSHIP TO RECEPTOR AND BINDING PROTEIN INTERACTIONS

PDB-1cpb:
STRUCTURE OF CARBOXYPEPTIDASE B AT 2.8 ANGSTROMS RESOLUTION

PDB-1cpc:
ISOLATION, CRYSTALLIZATION, CRYSTAL STRUCTURE ANALYSIS AND REFINEMENT OF CONSTITUTIVE C-PHYCOCYANIN FROM THE CHROMATICALLY ADAPTING CYANOBACTERIUM FREMYELLA DIPLOSIPHON AT 1.66 ANGSTROMS RESOLUTION

PDB-1cpd:
A CATION BINDING MOTIF STABILIZES THE COMPOUND I RADICAL OF CYTOCHROME C PEROXIDASE

PDB-1cpe:
A CATION BINDING MOTIF STABILIZES THE COMPOUND I RADICAL OF CYTOCHROME C PEROXIDASE

PDB-1cpf:
A CATION BINDING MOTIF STABILIZES THE COMPOUND I RADICAL OF CYTOCHROME C PEROXIDASE

PDB-1cph:
CONFORMATIONAL CHANGES IN CUBIC INSULIN CRYSTALS IN THE PH RANGE 7-11

PDB-1cpi:
REGIOSELECTIVE STRUCTURAL AND FUNCTIONAL MIMICRY OF PEPTIDES. DESIGN OF HYDROLYTICALLY STABLE CYCLIC PEPTIDOMIMETIC INHIBITORS OF HIV-1 PROTEASE

PDB-1cpj:
CRYSTAL STRUCTURES OF RECOMBINANT RAT CATHEPSIN B AND A CATHEPSIN B-INHIBITOR COMPLEX: IMPLICATIONS FOR STRUCTURE-BASED INHIBITOR DESIGN

PDB-1cpl:
Unknown entry

PDB-1cpm:
NATIVE-LIKE IN VIVO FOLDING OF A CIRCULARLY PERMUTED JELLYROLL PROTEIN SHOWN BY CRYSTAL STRUCTURE ANALYSIS

PDB-1cpn:
NATIVE-LIKE IN VIVO FOLDING OF A CIRCULARLY PERMUTED JELLYROLL PROTEIN SHOWN BY CRYSTAL STRUCTURE ANALYSIS

PDB-1cpo:
CHLOROPEROXIDASE

PDB-1cpq:
CYTOCHROME C' FROM RHODOPSEUDOMONAS CAPSULATA

PDB-1cpr:
ST. LOUIS CYTOCHROME C' FROM THE PURPLE PHOTOTROPIC BACTERIUM, RHODOBACTER CAPSULATUS

PDB-1cps:
STRUCTURAL COMPARISON OF SULFODIIMINE AND SULFONAMIDE INHIBITORS IN THEIR COMPLEXES WITH ZINC ENZYMES

PDB-1cpt:
CRYSTAL STRUCTURE AND REFINEMENT OF CYTOCHROME P450-TERP AT 2.3 ANGSTROMS RESOLUTION

PDB-1cpu:
SUBSITE MAPPING OF THE ACTIVE SITE OF HUMAN PANCREATIC ALPHA-AMYLASE USING SUBSTRATES, THE PHARMACOLOGICAL INHIBITOR ACARBOSE, AND AN ACTIVE SITE VARIANT

PDB-1cpw:
RECOMBINANT SPERM WHALE MYOGLOBIN L104W MUTANT (MET)

PDB-1cpx:
BETA FORM OF CARBOXYPEPTIDASE A (RESIDUES 3-307) FROM BOVINE PANCREAS IN AN ORTHORHOMBIC CRYSTAL FORM WITH TWO ZINC IONS IN THE ACTIVE SITE.

PDB-1cpy:
SITE-DIRECTED MUTAGENESIS ON (SERINE) CARBOXYPEPTIDASE Y FROM YEAST. THE SIGNIFICANCE OF THR 60 AND MET 398 IN HYDROLYSIS AND AMINOLYSIS REACTIONS

PDB-1cpz:
COPPER CHAPERONE OF ENTEROCOCCUS HIRAE (APO-FORM)

PDB-1cp0:
RECOMBINANT SPERM WHALE MYOGLOBIN L104N MUTANT (MET)

PDB-1cp1:
Unknown entry

PDB-1cp2:
NITROGENASE IRON PROTEIN FROM CLOSTRIDIUM PASTEURIANUM

PDB-1cp3:
CRYSTAL STRUCTURE OF THE COMPLEX OF APOPAIN WITH THE TETRAPEPTIDE INHIBITOR ACE-DVAD-FMC

PDB-1cp4:
FORMATION, CRYSTAL STRUCTURE, AND REARRANGEMENT OF A CYTOCHROME P450-CAM IRON-PHENYL COMPLEX

PDB-1cp5:
RECOMBINANT SPERM WHALE MYOGLOBIN L104F MUTANT (MET)

PDB-1cp6:
1-BUTANEBORONIC ACID BINDING TO AEROMONAS PROTEOLYTICA AMINOPEPTIDASE

PDB-1cp7:
AMINOPEPTIDASE FROM STREPTOMYCES GRISEUS

PDB-1cp8:
NMR STRUCTURE OF DNA (5'-D(TTGGCCAA)2-3') COMPLEXED WITH NOVEL ANTITUMOR DRUG UCH9

PDB-1cp9:
CRYSTAL STRUCTURE OF PENICILLIN G ACYLASE FROM THE BRO1 MUTANT STRAIN OF PROVIDENCIA RETTGERI

PDB-1cqa:
BIRCH POLLEN PROFILIN

ChemComp-6N4:
2-(1H-BENZIMIDAZOL-2-YLSULFANYL)ETHANOL

PDB-1cqc:
Unknown entry

PDB-1cqd:
THE 2.1 ANGSTROM STRUCTURE OF A CYSTEINE PROTEASE WITH PROLINE SPECIFICITY FROM GINGER RHIZOME, ZINGIBER OFFICINALE

PDB-1cqe:
PROSTAGLANDIN H2 SYNTHASE-1 COMPLEX WITH FLURBIPROFEN

PDB-1cqf:
THE COMPLEX OF THE MUTATED SHIGA TOXIN B SUBUNIT AND GB3 TRISACCHARIDE

PDB-1cqg:
HIGH RESOLUTION SOLUTION NMR STRUCTURE OF MIXED DISULFIDE INTERMEDIATE BETWEEN HUMAN THIOREDOXIN (C35A, C62A, C69A, C73A) MUTANT AND A 13 RESIDUE PEPTIDE COMPRISING ITS TARGET SITE IN HUMAN REF-1 (RESIDUES 59-71 OF THE P50 SUBUNIT OF NFKB), NMR, 31 STRUCTURES

PDB-1cqh:
HIGH RESOLUTION SOLUTION NMR STRUCTURE OF MIXED DISULFIDE INTERMEDIATE BETWEEN HUMAN THIOREDOXIN (C35A, C62A, C69A, C73A) MUTANT AND A 13 RESIDUE PEPTIDE COMPRISING ITS TARGET SITE IN HUMAN REF-1 (RESIDUES 59-71 OF THE P50 SUBUNIT OF NFKB), NMR, MINIMIZED AVERAGE STRUCTURE

PDB-1cqi:
Crystal Structure of the Complex of ADP and MG2+ with Dephosphorylated E. Coli Succinyl-CoA Synthetase

PDB-1cqj:
CRYSTAL STRUCTURE OF DEPHOSPHORYLATED E. COLI SUCCINYL-COA SYNTHETASE

PDB-1cqk:
CRYSTAL STRUCTURE OF THE CH3 DOMAIN FROM THE MAK33 ANTIBODY

PDB-1cs8:
CRYSTAL STRUCTURE OF PROCATHEPSIN L

PDB-1cql:
NMR STRUCTURE OF SRP RNA DOMAIN IV

由来
  • homo sapiens (ヒト)
  • escherichia coli (大腸菌)
キーワードMEMBRANE PROTEIN / G-PROTEIN-COUPLED RECEPTOR / INTEGRAL MEMBRANE PROTEIN / CHIMERA / 2 THERMOSTABILIZING MUTATIONS

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか? / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例:em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見文献

EMDB/PDB/SASBDBから引用されている文献のデータベース

  • EMDB/PDB/SASBDBのエントリから引用されている文献のデータベースです
  • Pubmedのデータを利用しています

関連情報:EMDB / PDB / SASBDB / 万見 (Yorodumi) / EMN文献 / 新しいEM Navigatorと万見の変更点

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