+Open data
-Basic information
Entry | Database: PDB / ID: 1cql | ||||||
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Title | NMR STRUCTURE OF SRP RNA DOMAIN IV | ||||||
Components | SRP DOMAIN IV RNA | ||||||
Keywords | RNA / SRP / RNA STRUCTURE / DOMAIN IV / SIGNAL SEQUENCE RECOGNITION / RIBONUCLEIC ACID | ||||||
Function / homology | RNA / RNA (> 10) Function and homology information | ||||||
Biological species | Escherichia coli (E. coli) | ||||||
Method | SOLUTION NMR / TORSION ANGLE DYNAMICS RESTRAINED MOLECULAR DYNAMICS COMPLETE RELAXATION MATRIX ANALYSIS | ||||||
Authors | Schmitz, U. / James, T.L. | ||||||
Citation | Journal: RNA / Year: 1999 Title: Structure of the phylogenetically most conserved domain of SRP RNA. Authors: Schmitz, U. / Behrens, S. / Freymann, D.M. / Keenan, R.J. / Lukavsky, P. / Walter, P. / James, T.L. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1cql.cif.gz | 278.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1cql.ent.gz | 228.5 KB | Display | PDB format |
PDBx/mmJSON format | 1cql.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1cql_validation.pdf.gz | 326.8 KB | Display | wwPDB validaton report |
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Full document | 1cql_full_validation.pdf.gz | 416.2 KB | Display | |
Data in XML | 1cql_validation.xml.gz | 16.3 KB | Display | |
Data in CIF | 1cql_validation.cif.gz | 25.4 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/cq/1cql ftp://data.pdbj.org/pub/pdb/validation_reports/cq/1cql | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: RNA chain | Mass: 13963.401 Da / Num. of mol.: 1 / Fragment: MODIFIED E. COLI SEQUENCE Source method: isolated from a genetically manipulated source Source: (gene. exp.) Escherichia coli (E. coli) |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||
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NMR experiment |
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NMR details | Text: G- AND A-SINGLE NUCLEOTIDE ISOTOPE LABELED SAMPLES WERE USED BESIDES A UNIFORMLY LABELED RNA |
-Sample preparation
Details |
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Sample conditions |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer | Type: Varian UNITYPLUS / Manufacturer: Varian / Model: UNITYPLUS / Field strength: 600 MHz |
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-Processing
NMR software |
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Refinement | Method: TORSION ANGLE DYNAMICS RESTRAINED MOLECULAR DYNAMICS COMPLETE RELAXATION MATRIX ANALYSIS Software ordinal: 1 / Details: 16.4 DISTANCE RESTRAINTS/RESIDUE | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations in the crucial areas ot the molecule Conformers calculated total number: 50 / Conformers submitted total number: 10 |