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- PDB-1cp6: 1-BUTANEBORONIC ACID BINDING TO AEROMONAS PROTEOLYTICA AMINOPEPTIDASE -
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Open data
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Basic information
Entry | Database: PDB / ID: 1cp6 | |||||||||
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Title | 1-BUTANEBORONIC ACID BINDING TO AEROMONAS PROTEOLYTICA AMINOPEPTIDASE | |||||||||
![]() | PROTEIN (AMINOPEPTIDASE) | |||||||||
![]() | HYDROLASE / AMINOPEPTIDASE | |||||||||
Function / homology | ![]() bacterial leucyl aminopeptidase / metalloexopeptidase activity / aminopeptidase activity / proteolysis / extracellular region / metal ion binding Similarity search - Function | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() | |||||||||
![]() | Depaola, C.C. / Bennett, B. / Holz, R.C. / Ringe, D. / Petsko, G.A. | |||||||||
![]() | ![]() Title: 1-Butaneboronic acid binding to Aeromonas proteolytica aminopeptidase: a case of arrested development. Authors: De Paola, C.C. / Bennett, B. / Holz, R.C. / Ringe, D. / Petsko, G.A. #1: ![]() Title: Crystal Structure of the Aeromonas Proteolytica Aminopeptidase: A Prototypical Member of the Co-Catalytic Zinc Family Authors: Chevrier, B. / Schalk, C. / D'Orchmont, H. / Rondeau, J.-M. / Moras, D. / Tarnus, C. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 71.4 KB | Display | ![]() |
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PDB format | ![]() | 52 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 380.2 KB | Display | ![]() |
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Full document | ![]() | 384.5 KB | Display | |
Data in XML | ![]() | 7.5 KB | Display | |
Data in CIF | ![]() | 11.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1ampS S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 31427.350 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() References: UniProt: Q01693, bacterial leucyl aminopeptidase | ||||
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#2: Chemical | #3: Chemical | ChemComp-BUB / | #4: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.67 Å3/Da / Density % sol: 54.01 % | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | pH: 8 / Details: 100 MM TRIS PH 8.0, 100 MM KSCN, 4.5 M NACL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS Method: vapor diffusion | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 277 K |
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Diffraction source | Source: ![]() |
Detector | Type: RIGAKU RAXIS / Detector: IMAGE PLATE / Date: Mar 15, 1997 |
Radiation | Monochromator: NI FILTER / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 1.9→30 Å / Num. obs: 23658 / % possible obs: 84.2 % / Observed criterion σ(I): 0 / Redundancy: 6.9 % / Rmerge(I) obs: 0.134 |
Reflection shell | Resolution: 1.9→2.1 Å / Rmerge(I) obs: 0.378 / % possible all: 46.7 |
Reflection | *PLUS Num. measured all: 163530 |
Reflection shell | *PLUS % possible obs: 46.7 % |
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Processing
Software |
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Refinement | Method to determine structure: OTHER Starting model: 1AMP Resolution: 1.9→10 Å / Data cutoff high absF: 0 / Data cutoff low absF: 0 / Cross valid method: THROUGHOUT / σ(F): 0
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Refinement step | Cycle: LAST / Resolution: 1.9→10 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.9→10 Å / Total num. of bins used: 8 / % reflection obs: 85 % | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Software | *PLUS Name: ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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