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Structure paper

TitleHistone recognition and large-scale structural analysis of the human bromodomain family.
Journal, issue, pagesCell(Cambridge,Mass. ), Vol. 149, Page 214-231, Year 2012
Publish dateNov 17, 2006 (structure data deposition date)
AuthorsFilippakopoulos, P. / Picaud, S. / Mangos, M. / Keates, T. / Lambert, J.P. / Barsyte-Lovejoy, D. / Felletar, I. / Volkmer, R. / Muller, S. / Pawson, T. ...Filippakopoulos, P. / Picaud, S. / Mangos, M. / Keates, T. / Lambert, J.P. / Barsyte-Lovejoy, D. / Felletar, I. / Volkmer, R. / Muller, S. / Pawson, T. / Gingras, A.C. / Arrowsmith, C.H. / Knapp, S.
External linksCell(Cambridge,Mass. ) / PubMed:22464331
MethodsX-ray diffraction
Resolution1.35 - 2.54 Å
Structure data

PDB-2nxb:
Crystal structure of human Bromodomain containing protein 3 (BRD3)
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-2oo1:
Crystal structure of the Bromo domain 2 of human Bromodomain containing protein 3 (BRD3)
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-2oss:
Crystal structure of the Bromo domain 1 in human Bromodomain Containing Protein 4 (BRD4)
Method: X-RAY DIFFRACTION / Resolution: 1.35 Å

PDB-2ouo:
Crystal Structure of the Bromo domain 2 in human Bromodomain Containing Protein 4 (BRD4)
Method: X-RAY DIFFRACTION / Resolution: 1.89 Å

PDB-2rfj:
Crystal structure of the bromo domain 1 in human bromodomain containing protein, testis specific (BRDT)
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

PDB-3d7c:
Crystal structure of the bromodomain of human GCN5, the general control of amino-acid synthesis protein 5-like 2
Method: X-RAY DIFFRACTION / Resolution: 2.06 Å

PDB-3dai:
Crystal structure of the bromodomain of the human ATAD2
Method: X-RAY DIFFRACTION / Resolution: 1.95 Å

PDB-3dwy:
Crystal Structure of the Bromodomain of Human CREBBP
Method: X-RAY DIFFRACTION / Resolution: 1.98 Å

PDB-3gg3:
Crystal Structure of the Bromodomain of Human PCAF
Method: X-RAY DIFFRACTION / Resolution: 2.25 Å

PDB-3hme:
Crystal structure of human bromodomain containing 9 isoform 1 (BRD9)
Method: X-RAY DIFFRACTION / Resolution: 2.23 Å

PDB-3hmf:
Crystal Structure of the second Bromodomain of Human Poly-bromodomain containing protein 1 (PB1)
Method: X-RAY DIFFRACTION / Resolution: 1.63 Å

PDB-3hmh:
Crystal structure of the second bromodomain of human TBP-associated factor RNA polymerase 1-like (TAF1L)
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

PDB-3i3j:
Crystal Structure of the Bromodomain of Human EP300
Method: X-RAY DIFFRACTION / Resolution: 2.33 Å

PDB-3iu5:
Crystal structure of the first bromodomain of human poly-bromodomain containing protein 1 (PB1)
Method: X-RAY DIFFRACTION / Resolution: 1.63 Å

PDB-3iu6:
Crystal structure of the sixth bromodomain of human poly-bromodomain containing protein 1 (PB1)
Method: X-RAY DIFFRACTION / Resolution: 1.79 Å

PDB-3lxj:
Crystal Structure of the Bromodomain of Human AAA domain containing 2B (ATAD2B)
Method: X-RAY DIFFRACTION / Resolution: 2.33 Å

PDB-3mb3:
Crystal Structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP)
Method: X-RAY DIFFRACTION / Resolution: 2.25 Å

PDB-3mb4:
Crystal Structure of the fifth Bromodomain of Human Poly-bromodomain containing protein 1 (PB1) with NMP
Method: X-RAY DIFFRACTION / Resolution: 1.66 Å

PDB-3mqm:
Crystal Structure of the Bromodomain of human ASH1L
Method: X-RAY DIFFRACTION / Resolution: 2.54 Å

PDB-3nxb:
Crystal Structure of the Bromodomain of human CECR2
Method: X-RAY DIFFRACTION / Resolution: 1.83 Å

PDB-3p1c:
Crystal structure of the bromodomain of human CREBBP in complex with acetylated lysine
Method: X-RAY DIFFRACTION / Resolution: 1.82 Å

PDB-3p1d:
Crystal structure of the bromodomain of human CREBBP in complex with N-Methyl-2-pyrrolidone (NMP)
Method: X-RAY DIFFRACTION / Resolution: 1.86 Å

PDB-3q2e:
Crystal structure of the second bromodomain of human bromodomain and WD repeat-containing protein 1 isoform A (WDR9)
Method: X-RAY DIFFRACTION / Resolution: 1.74 Å

PDB-3rcw:
Crystal Structure of the bromodomain of human BRD1
Method: X-RAY DIFFRACTION / Resolution: 2.21 Å

PDB-3tlp:
Crystal structure of the fourth bromodomain of human poly-bromodomain containing protein 1 (PB1)
Method: X-RAY DIFFRACTION / Resolution: 2.13 Å

PDB-3uv2:
Crystal structure of the bromodomain of human nucleosome-remodeling factor subunit BPTF
Method: X-RAY DIFFRACTION / Resolution: 1.58 Å

PDB-3uv4:
Crystal Structure of the second bromodomain of human Transcription initiation factor TFIID subunit 1 (TAF1)
Method: X-RAY DIFFRACTION / Resolution: 1.89 Å

PDB-3uv5:
Crystal Structure of the tandem bromodomains of human Transcription initiation factor TFIID subunit 1 (TAF1)
Method: X-RAY DIFFRACTION / Resolution: 2.03 Å

PDB-3uvd:
Crystal Structure of the bromodomain of human Transcription activator BRG1 (SMARCA4) in complex with N-Methyl-2-pyrrolidone
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-3uvw:
Crystal Structure of the first bromodomain of human BRD4 in complex with a diacetylated histone 4 peptide (H4K5acK8ac)
Method: X-RAY DIFFRACTION / Resolution: 1.37 Å

PDB-3uvx:
Crystal Structure of the first bromodomain of human BRD4 in complex with a diacetylated histone 4 peptide (H4K12acK16ac)
Method: X-RAY DIFFRACTION / Resolution: 1.91 Å

PDB-3uvy:
Crystal Structure of the first bromodomain of human BRD4 in complex with a diacetylated histone 4 peptide (H4K16acK20ac)
Method: X-RAY DIFFRACTION / Resolution: 2.02 Å

PDB-3uw9:
Crystal Structure of the first bromodomain of human BRD4 in complex with a diacetylated histone 4 peptide (H4K8acK12ac)
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

Chemicals

ChemComp-NA:
Unknown entry

ChemComp-EDO:
1,2-ETHANEDIOL / Ethylene glycol

ChemComp-HOH:
WATER / Water

ChemComp-7PE:
2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL / Polyethylene glycol

ChemComp-SO4:
SULFATE ION / Sulfate

ChemComp-CL:
Unknown entry / Chloride

ChemComp-ZN:
Unknown entry

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER / Diethylene glycol

ChemComp-IPA:
ISOPROPYL ALCOHOL / alkaloid*YM / Isopropyl alcohol

ChemComp-MB3:
1-methylpyrrolidin-2-one / N-Methyl-2-pyrrolidone

ChemComp-ALY:
N(6)-ACETYLLYSINE

ChemComp-SCN:
THIOCYANATE ION / Thiocyanate

ChemComp-K:
Unknown entry

ChemComp-ACT:
ACETATE ION / Acetate

ChemComp-NI:
NICKEL (II) ION / Nickel

ChemComp-GOL:
GLYCEROL / Glycerol

ChemComp-PO4:
PHOSPHATE ION / Phosphate

ChemComp-TRS:
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / pH buffer*YM / Tris

ChemComp-FMT:
FORMIC ACID / Formic acid

Source
  • homo sapiens (human)
KeywordsSIGNALING PROTEIN / BRD3 / bromodomain containing protein 3 / ORFX / RING3 like gene / RING3L / Structural Genomics / Structural Genomics Consortium / SGC / BRD4 / bromodomain containing protein 4 / TRANSCRIPTION REGULATOR / BRDT / bromodomain containing protein testis specific / Nucleus / Transcription / Transcription regulation / GCN5 / bromodomain / amino-acid synthesis / Host-virus interaction / Phosphoprotein / Transferase / BIOSYNTHETIC PROTEIN / ATPase family / AAA domain containing 2 / ANCCA / AAA+ nuclear coregulator cancer-associated PRO2000 protein / two AAA domain containing protein / ATP-binding / Nucleotide-binding / CREB binding protein / Activator / Disease mutation / Metal-binding / Methylation / Zinc-finger / PCAF / K(lysine) acetyltransferase 2B / KAT2B / GCN5L / P / P/CAF / CREBBP-associated factor / p300/CBP-associated factor / Acyltransferase / Cell cycle / BRD9 / bromodomain containing 9 isoform 1 / LAVS3040 / PRO9856 / Rhabdomyosarcoma antigen MU-RMS-40.8 / Sarcoma antigen NY-SAR-29 / PB1 / polybromo 1 isoform 1 / BAF180 / Polybromo-1D / PBRM1 / BRG1-associated factor 180 / Chromatin regulator / DNA-binding / MGC134910 / TAF2A2 / Disulfide bond / Structural Genomics Bromodomain / P300 / Consortium / Citrullination / Polybromo0ID / HYDROLASE / AAA domain containing 2B / ATAD2B / PHIP / Pleckstrin homology domain interacting protein / DCAF14 / ndrp / DDB1 and CUL4 associated factor 14 / WD repeat / ASH1L / Ash1 / KIAA1420 / Absent small and homeotic disks protein 1 homolog / Lysine N-methyltransferase 2H / KMT2H / CECR2 / cat eye syndrome chromosome region candidate 2 / CBP / CREBBP / CREB binding protein isoform a / KAT3A / RSTS / RST / cell cycle progression / signal transduction / apoptosis / gene regulation / Down syndrome region-2 on chromosome 21 / BPTF / FALZ / FAC1 / Bromodomain and PHD finger-containing transcription factor / Fetal Alz-50 clone 1 protein / Fetal Alzheimer antigen / Tandem bromodomain / TAF1 / Cell cycle gene 1 protein / TBP-associated factor 250 kDa / Transcription initiation factor TFIID 250 kDa subunit / TFII-250 / ATP-dependent helicase SMARCA4 / BRG1-associated factor 190A / BAF190A / Mitotic growth and transcription activator / Protein BRG-1 / Protein brahma homolog 1 / SNF2-beta / SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 / TRANSCRIPTION/PROTEIN BINDING / CAP / HUNK1 / MCAP / Mitotic chromosome associated protein / peptide complex / PROTEIN BINDING / TRANSCRIPTION-PROTEIN BINDING complex

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